View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4970_high_8 (Length: 465)
Name: NF4970_high_8
Description: NF4970
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4970_high_8 |
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Alignment Details
Target: chr3 (Bit Score: 272; Significance: 1e-152; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 272; E-Value: 1e-152
Query Start/End: Original strand, 11 - 305
Target Start/End: Original strand, 34894013 - 34894305
Alignment:
| Q |
11 |
taatactgcaagagttgaaatattgtctggctataattggttattgctcaaattagcttcatgaatgatatgtaaggcaataactttcttaaaaggaaaa |
110 |
Q |
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| T |
34894013 |
taatactgcaagagttgaaatattgtctggctataaatggttattgctcaaattagcttcatgaatgat--gtaaggcaataactttcttaaaaggaaaa |
34894110 |
T |
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| Q |
111 |
ttaaaatagacttctaactaacaaattagcatcatattgattgatcacaaaagccttaacttcaaaagcagtgagggagtaattgcaataatatatagtg |
210 |
Q |
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| T |
34894111 |
ttaaaatagacttctaactaacaaattagcatcatattgattgatcacaaaagccttaacttcaaaagcagtgagggagtaattgcaataatatatagtg |
34894210 |
T |
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| Q |
211 |
tcccttcagctagcaagctacattatagttaactatttactccttccatctcataatatagtataacaacaaaaactatctcattttaaatatct |
305 |
Q |
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| T |
34894211 |
tcccttcagctagcaagctacattatagttaactatttactcctttcatctcatattatagtataacaacaaaaactatctcattttaaatatct |
34894305 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 119; E-Value: 1e-60
Query Start/End: Original strand, 299 - 425
Target Start/End: Original strand, 34894368 - 34894494
Alignment:
| Q |
299 |
aatatctcctcttcaactcttctaactaatatgaaagtgtagaaaattatacaatattttgtatgaaacctaaaatattaatcacatttcttaattcatg |
398 |
Q |
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|||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34894368 |
aatatcccatcttcaactcttctaactaatatgaaagtgtagaaaattatacaatattttgtatgaaacctaaaatattaatcacatttcttaattcatg |
34894467 |
T |
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| Q |
399 |
tgttaaaatcttaaaacaaattataat |
425 |
Q |
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| T |
34894468 |
tgttaaaatcttaaaacaaattataat |
34894494 |
T |
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