View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4970_low_10 (Length: 490)
Name: NF4970_low_10
Description: NF4970
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4970_low_10 |
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Alignment Details
Target: chr5 (Bit Score: 385; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 385; E-Value: 0
Query Start/End: Original strand, 21 - 479
Target Start/End: Original strand, 21056474 - 21056946
Alignment:
| Q |
21 |
actggactttaagcaagaatggaaggggtgatcttggttctactgttgcctaatttgagtagaggatttgtttgaagaaacaa--------------cta |
106 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
21056474 |
actggactttaagcaagaatggaaggggtgatcttggttctactgttgcctaatttgagtagaggatttgtttgaagaaacaacaagatagagacaacta |
21056573 |
T |
|
| Q |
107 |
gccgcaaaaatgaagatctcgaaggtgaatatgaatcatacaattttatacattatgcaacatgcacctgaattttatacagtatacatttcttgatatt |
206 |
Q |
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| T |
21056574 |
gccgcaaaaatgaagatctcgaaggtgaatatgaatcatacaattttatacattatgcaacatgcacctgaattttatacagtatacatttcttgatatt |
21056673 |
T |
|
| Q |
207 |
taggcgttgtttaatttacattaaatcgcttgagaaaaatgcttctcttgcacctgtattttgatttactcgacatcatttcnnnnnnnattactaaaag |
306 |
Q |
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| T |
21056674 |
taagcattgtttaatttacattaaatcgcttgagaaaaatgcttctcttgcacctgtattttgatttactcgacatcgtttctttttttattactaaaag |
21056773 |
T |
|
| Q |
307 |
gtgatctccagtttcgttgtccagagtccaaacatagctttaattgatttctagaactcaagcttcctttaattgactatttaaattatttgaacctgtt |
406 |
Q |
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|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
21056774 |
gtgatctccagtttcgttgtccagagtccagacatagctttaattgatttctagaactcaagcttcctttaattgactatttaaattatttgaacctgtt |
21056873 |
T |
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| Q |
407 |
tgtaattattgtaaatgggagaaacatcttgttattatctatagagatgaatatagctactgcttcacttctt |
479 |
Q |
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| T |
21056874 |
tgtaattattttaaatgggagaaacatcttgttattatctatagagatgaatatagctactgcttcacttctt |
21056946 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 155; Significance: 4e-82; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 155; E-Value: 4e-82
Query Start/End: Original strand, 21 - 479
Target Start/End: Complemental strand, 26365500 - 26365067
Alignment:
| Q |
21 |
actggactttaagcaagaatggaaggggtgatcttggttctactgttgcctaatttgagtagaggatttgtttgaagaaacaactagccgc--aaaaatg |
118 |
Q |
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|||| ||||||||||||||||||||| ||||||||||| | ||||||||||||||||||||||||||||| ||||||| ||||| ||| | ||||| | |
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| T |
26365500 |
actgaactttaagcaagaatggaaggagtgatcttggtccaactgttgcctaatttgagtagaggatttggttgaagagacaacaagctgactaaaaaag |
26365401 |
T |
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| Q |
119 |
aagatctcgaaggtgaatatgaatcatacaattttatacattatgcaacatgcacctgaattttatacagtatacatttcttgatatttaggcgttgttt |
218 |
Q |
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| T |
26365400 |
aagatcttgaaggtgaat--gaatcatacaattttatacaatatgcta--------------ttat------tacatttcttgatatttaggtgttgatt |
26365323 |
T |
|
| Q |
219 |
aatttacattaaatcgcttgagaaaaatgcttctcttgcac--ctgtattttgatttactcgacatcatttcnnnnnnnattactaaaaggtgatctcca |
316 |
Q |
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|||| ||||| ||||| |||||||| |||||||| |||||| ||||||||||||||||| ||| ||||||| ||||| ||||||||| || | |
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| T |
26365322 |
aattcacattgaatcgtttgagaaacatgcttct-ttgcacacctgtattttgatttacttgacgtcatttctttttttattacgaaaaggtgacctaaa |
26365224 |
T |
|
| Q |
317 |
gtttcgttgtccagagtccaaacatagctttaattgatt-tctagaactcaagcttcctttaattgactatttaaattatttgaacctgtttgtaattat |
415 |
Q |
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|||| || |||| | |||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||| |
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| T |
26365223 |
gttt----gt----agtcgagacatagctttaattgattatctagaactcaagcttcctttaattgactatttaaactatttgaacctgtttataattat |
26365132 |
T |
|
| Q |
416 |
tgtaaatgggagaaacatcttgttattatctatagagatgaata-tagctactgcttcacttctt |
479 |
Q |
| |
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| |||| |||||||||||||| |||||||||||||||||||||| |||||||||||||||||||| |
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|
| T |
26365131 |
tttaaaagggagaaacatctttttattatctatagagatgaatattagctactgcttcacttctt |
26365067 |
T |
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