View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4970_low_11 (Length: 467)

Name: NF4970_low_11
Description: NF4970
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4970_low_11
NF4970_low_11
[»] chr5 (5 HSPs)
chr5 (260-451)||(42652549-42652738)
chr5 (66-200)||(42652417-42652551)
chr5 (302-411)||(31338566-31338675)
chr5 (66-280)||(31338230-31338453)
chr5 (417-451)||(31338707-31338741)
[»] chr3 (2 HSPs)
chr3 (216-411)||(21310046-21310248)
chr3 (66-132)||(21309891-21309957)
[»] chr4 (3 HSPs)
chr4 (296-412)||(50564733-50564849)
chr4 (67-140)||(50565025-50565095)
chr4 (420-449)||(50564678-50564707)
[»] chr6 (1 HSPs)
chr6 (210-390)||(4486308-4486495)
[»] chr1 (1 HSPs)
chr1 (296-411)||(45088994-45089109)


Alignment Details
Target: chr5 (Bit Score: 181; Significance: 1e-97; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 181; E-Value: 1e-97
Query Start/End: Original strand, 260 - 451
Target Start/End: Original strand, 42652549 - 42652738
Alignment:
Q  260 atagtcttctgcacactaacaattcaagttcaactgctctaaatcccatccttctcacatagcttaaaccctccaacgctccccaaagctcagccacaaa 359  Q
    |||||||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42652549 atagtcttctgcacactaacaattcaa--tcaactgctctaaatcccatccttctcacatagcttaaaccctccaacgctccccaaagctcagccacaaa 42652646  T
Q  360 cgcattacagtctccaatatatttaacaaaaccaccaatccattctccatcaccattaccagctatatttccacccttgcacgcaccatctg 451  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42652647 cgcattacagtctccaatatatttaacaaaaccaccaatccattctccatcaccattaccagctatatttccacccttgcacgcaccatctg 42652738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 127; E-Value: 2e-65
Query Start/End: Original strand, 66 - 200
Target Start/End: Original strand, 42652417 - 42652551
Alignment:
Q  66 gtaaatgtctaatatgagtcggacatgcctcgtatatcttcaaattataattcaaggagcacgcaatatttgctacacatcgattaacctattcgtatga 165  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  42652417 gtaaatgtctaatatgagtcggacatgcctcgtatatcttcaaattataattcaaggagcacgcaatatttgctacacatcgattaacctattcatatga 42652516  T
Q  166 atgagaaagttcatgattccaatccacctccaata 200  Q
    |||||||||||||| ||||||||||||||||||||    
T  42652517 atgagaaagttcatcattccaatccacctccaata 42652551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 302 - 411
Target Start/End: Original strand, 31338566 - 31338675
Alignment:
Q  302 atcccatccttctcacatagcttaaaccctccaacgctccccaaagctcagccacaaacgcattacagtctccaatatatttaacaaaaccaccaatcca 401  Q
    ||||||||||||||||||| || |||||||| ||| |||||||||||||  ||||||||||||| || || |||||  ||||| ||||||||||||||||    
T  31338566 atcccatccttctcacatatctcaaaccctcaaacactccccaaagctccaccacaaacgcattgcactcgccaatgaatttagcaaaaccaccaatcca 31338665  T
Q  402 ttctccatca 411  Q
    ||||||||||    
T  31338666 ttctccatca 31338675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 66 - 280
Target Start/End: Original strand, 31338230 - 31338453
Alignment:
Q  66 gtaaatgtctaatatgagtcggacatgcctcgtatatcttcaaattataattcaaggagcacgcaatatttgcta---------cacatcgattaaccta 156  Q
    ||||||||||||| ||||||| ||||| ||| |||||||||| |||||||| ||| ||||| ||||| || ||||         |||| ||||| ||||     
T  31338230 gtaaatgtctaatttgagtcgaacatggctcatatatcttcagattataatccaaagagcaagcaatgttggctaaagcatctgcacaccgattgacctc 31338329  T
Q  157 ttcgtatgaatgagaaagttcatgattccaatccacctccaataagcaactgattttaataaccaacgctctacccaagcaaccatttgtcataccttcc 256  Q
    |   |||||||||||||   ||   |||||||||| ||||||||||| ||  |||||| |||| |||||||||||||||| || || ||||| |||||||    
T  31338330 tcgatatgaatgagaaacaacaacgttccaatccatctccaataagcgacgaattttattaactaacgctctacccaagcgactatctgtcacaccttcc 31338429  T
Q  257 tttatagtcttctgcacactaaca 280  Q
    ||||||||||||| || |||||||    
T  31338430 tttatagtcttctccaaactaaca 31338453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 417 - 451
Target Start/End: Original strand, 31338707 - 31338741
Alignment:
Q  417 accagctatatttccacccttgcacgcaccatctg 451  Q
    ||||||| |||||||||||||||||||||||||||    
T  31338707 accagctttatttccacccttgcacgcaccatctg 31338741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 75; Significance: 2e-34; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 216 - 411
Target Start/End: Original strand, 21310046 - 21310248
Alignment:
Q  216 taaccaacgctctacccaagcaaccatttgtcataccttcctttatagtcttctgcacactaaca--------attcaagttcaactgctctaaatccca 307  Q
    |||||| |||||||||||||| || || ||||| ||||| |||||||||||||| ||||||||||        |||||| ||| ||||||  | ||||||    
T  21310046 taaccagcgctctacccaagcgactatctgtcacacctttctttatagtcttctccacactaacacaatctacattcaa-ttctactgctgcatatccca 21310144  T
Q  308 tccttctcacatagcttaaaccctccaacgctccccaaagctcagccacaaacgcattacagtctccaatatatttaacaaaaccaccaatccattctcc 407  Q
    ||||||||||||| || | |||||||||| ||||||||||||| |||||||||||||| || || |||||  ||||| |||||||||| |||||||||||    
T  21310145 tccttctcacatatctcagaccctccaacactccccaaagctccgccacaaacgcattgcactcgccaatgaatttagcaaaaccaccgatccattctcc 21310244  T
Q  408 atca 411  Q
    ||||    
T  21310245 atca 21310248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 66 - 132
Target Start/End: Original strand, 21309891 - 21309957
Alignment:
Q  66 gtaaatgtctaatatgagtcggacatgcctcgtatatcttcaaattataattcaaggagcacgcaat 132  Q
    ||||||||||||| ||||||||||||| |||  ||||||||| |||||||| ||| ||||| |||||    
T  21309891 gtaaatgtctaatttgagtcggacatgtctcaaatatcttcagattataatccaaagagcaagcaat 21309957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 61; Significance: 5e-26; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 296 - 412
Target Start/End: Complemental strand, 50564849 - 50564733
Alignment:
Q  296 ctctaaatcccatccttctcacatagcttaaaccctccaacgctccccaaagctcagccacaaacgcattacagtctccaatatatttaacaaaaccacc 395  Q
    |||||||||||||||||||| ||||||| |||||||||||| || | ||||||||| ||||||||||| |||| |  |||||  |||||  |||||||||    
T  50564849 ctctaaatcccatccttctcgcatagctcaaaccctccaacactactcaaagctcaaccacaaacgcactacaattgccaatgaatttagtaaaaccacc 50564750  T
Q  396 aatccattctccatcac 412  Q
    |||||||||||||||||    
T  50564749 aatccattctccatcac 50564733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 67 - 140
Target Start/End: Complemental strand, 50565095 - 50565025
Alignment:
Q  67 taaatgtctaatatgagtcggacatgcctcgtatatcttcaaattataattcaaggagcacgcaatatttgcta 140  Q
    |||||||||||| |||||   ||||| ||||||||||||||||||||||| ||| |||||| || |||||||||    
T  50565095 taaatgtctaatttgagt---acatgtctcgtatatcttcaaattataatccaaagagcacacagtatttgcta 50565025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 420 - 449
Target Start/End: Complemental strand, 50564707 - 50564678
Alignment:
Q  420 agctatatttccacccttgcacgcaccatc 449  Q
    ||||||||||||||||||||||||||||||    
T  50564707 agctatatttccacccttgcacgcaccatc 50564678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 52; Significance: 1e-20; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 210 - 390
Target Start/End: Original strand, 4486308 - 4486495
Alignment:
Q  210 ttttaataaccaacgctctacccaagcaaccatttgtcataccttcctttatagtcttctgcacactaaca--------attcaagttcaactgctctaa 301  Q
    ||||| ||||||| ||||||||||| | || || |||||||||||||||||||||||||| |||||||| |        |||||| |||||||||||||     
T  4486308 ttttattaaccaaagctctacccaaacgactatctgtcataccttcctttatagtcttcttcacactaatagaatccacattcaa-ttcaactgctctag 4486406  T
Q  302 atcccatccttctcacatagcttaaaccctccaacgctccccaaagctcagccacaaacgcattacagtctccaatatatttaacaaaa 390  Q
    |||||||||||||  ||||  |  |||| | |||| |||||||||||||  ||||||||||| |||| || |||||  |||||||||||    
T  4486407 atcccatccttcttgcatatatcgaaccttgcaacactccccaaagctcttccacaaacgcactacaatcgccaatgaatttaacaaaa 4486495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 296 - 411
Target Start/End: Original strand, 45088994 - 45089109
Alignment:
Q  296 ctctaaatcccatccttctcacatagcttaaaccctccaacgctccccaaa-gctcagccacaaacgcattacagtctccaatatatttaacaaaaccac 394  Q
    |||||||||||||||| | |||||| || |||||| ||||| ||  ||||| ||||||||||||||||| |||| |||| |||  ||||| |||||||      
T  45088994 ctctaaatcccatcct-cacacataactcaaaccccccaacactttccaaaagctcagccacaaacgcactacaatctcgaatgaatttagcaaaaccgt 45089092  T
Q  395 caatccattctccatca 411  Q
    |||||||||||||||||    
T  45089093 caatccattctccatca 45089109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University