View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4970_low_15 (Length: 450)

Name: NF4970_low_15
Description: NF4970
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4970_low_15
NF4970_low_15
[»] chr8 (7 HSPs)
chr8 (18-190)||(25003876-25004048)
chr8 (19-61)||(4844438-4844480)
chr8 (185-230)||(25003800-25003845)
chr8 (18-82)||(20811014-20811077)
chr8 (22-61)||(3166437-3166476)
chr8 (18-61)||(5557151-5557194)
chr8 (19-61)||(25336153-25336195)
[»] chr1 (11 HSPs)
chr1 (20-251)||(1944587-1944818)
chr1 (18-238)||(1991428-1991648)
chr1 (18-61)||(15088288-15088331)
chr1 (18-61)||(22210896-22210939)
chr1 (18-72)||(7064056-7064110)
chr1 (21-61)||(44193476-44193516)
chr1 (18-61)||(7899017-7899060)
chr1 (18-61)||(22207333-22207376)
chr1 (18-61)||(22219646-22219689)
chr1 (20-77)||(17914286-17914342)
chr1 (18-60)||(51843970-51844012)
[»] chr3 (11 HSPs)
chr3 (18-182)||(27170152-27170312)
chr3 (21-81)||(37489404-37489463)
chr3 (18-61)||(2747089-2747132)
chr3 (18-61)||(18111118-18111161)
chr3 (18-76)||(5835303-5835360)
chr3 (18-61)||(19359884-19359927)
chr3 (18-61)||(19440742-19440785)
chr3 (20-61)||(14521663-14521704)
chr3 (18-62)||(5938412-5938456)
chr3 (18-61)||(28034365-28034408)
chr3 (18-76)||(12092499-12092556)
[»] chr5 (4 HSPs)
chr5 (20-77)||(23213657-23213714)
chr5 (18-61)||(41527905-41527948)
chr5 (17-76)||(26075641-26075699)
chr5 (20-52)||(22301912-22301944)
[»] chr2 (10 HSPs)
chr2 (18-85)||(29742309-29742375)
chr2 (18-61)||(31314672-31314715)
chr2 (20-197)||(33119036-33119211)
chr2 (20-152)||(27085397-27085529)
chr2 (18-57)||(31347403-31347442)
chr2 (20-106)||(33125357-33125441)
chr2 (18-76)||(17863256-17863313)
chr2 (18-54)||(38211375-38211411)
chr2 (18-61)||(29747172-29747215)
chr2 (18-55)||(18010938-18010975)
[»] chr7 (6 HSPs)
chr7 (18-70)||(20920343-20920396)
chr7 (18-61)||(3737877-3737920)
chr7 (18-77)||(4340571-4340629)
chr7 (18-61)||(19802275-19802318)
chr7 (18-61)||(21959224-21959267)
chr7 (18-77)||(1454849-1454910)
[»] chr4 (10 HSPs)
chr4 (20-61)||(1505368-1505409)
chr4 (18-77)||(13701984-13702042)
chr4 (18-77)||(13712477-13712535)
chr4 (18-72)||(24627385-24627438)
chr4 (18-72)||(31663882-31663935)
chr4 (18-61)||(5599278-5599321)
chr4 (22-77)||(14803427-14803483)
chr4 (18-49)||(1604726-1604757)
chr4 (22-61)||(4852071-4852110)
chr4 (18-54)||(20349574-20349610)
[»] chr6 (4 HSPs)
chr6 (18-61)||(5131354-5131397)
chr6 (18-61)||(31113645-31113688)
chr6 (18-61)||(34256207-34256250)
chr6 (18-51)||(33301152-33301185)
[»] scaffold0158 (1 HSPs)
scaffold0158 (18-61)||(5-48)
[»] scaffold0046 (1 HSPs)
scaffold0046 (18-61)||(89867-89910)
[»] scaffold0043 (1 HSPs)
scaffold0043 (18-59)||(70144-70185)
[»] scaffold0060 (1 HSPs)
scaffold0060 (20-60)||(45204-45244)
[»] scaffold0005 (1 HSPs)
scaffold0005 (22-77)||(36244-36300)
[»] scaffold0024 (1 HSPs)
scaffold0024 (18-74)||(63495-63550)


Alignment Details
Target: chr8 (Bit Score: 157; Significance: 3e-83; HSPs: 7)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 157; E-Value: 3e-83
Query Start/End: Original strand, 18 - 190
Target Start/End: Complemental strand, 25004048 - 25003876
Alignment:
Q  18 tcagtgagttccacctatcctaggttgtaggcaatctcagggaaacctatgatcgtcatccgtttgtatataaacataatctagggtttactattttgac 117  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  25004048 tcagtgagttccacctatcctaggctgtaggcaatctcagggaaacctatgatcgtcattcgtttgtatataaacataatctagggtttactattttgac 25003949  T
Q  118 atgcttatcgtagcgatatggggaatactaggatcgctgacagtatactattataaatcttgtcacaatatat 190  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||    
T  25003948 atgcttatcgtagcgatatggggaatactaggatcgctgacagtatactatcataaatcttgtcataatatat 25003876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 19 - 61
Target Start/End: Complemental strand, 4844480 - 4844438
Alignment:
Q  19 cagtgagttccacctatcctaggttgtaggcaatctcagggaa 61  Q
    |||||||||||||||||||||||||||||||||||||||||||    
T  4844480 cagtgagttccacctatcctaggttgtaggcaatctcagggaa 4844438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 185 - 230
Target Start/End: Complemental strand, 25003845 - 25003800
Alignment:
Q  185 atatatcatatttttatatacgtaatttattatgttagcgtggaac 230  Q
    ||||||||||||||||||||||||||||||||||||||| ||||||    
T  25003845 atatatcatatttttatatacgtaatttattatgttagcatggaac 25003800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 18 - 82
Target Start/End: Complemental strand, 20811077 - 20811014
Alignment:
Q  18 tcagtgagttccacctatcctaggttgtaggcaatctcagggaaacctatgatcgtcatccgttt 82  Q
    |||||||||||||||||||||||||||||||||||||||| | |||||| ||||| |||| ||||    
T  20811077 tcagtgagttccacctatcctaggttgtaggcaatctcagtg-aacctaggatcgccatctgttt 20811014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 22 - 61
Target Start/End: Complemental strand, 3166476 - 3166437
Alignment:
Q  22 tgagttccacctatcctaggttgtaggcaatctcagggaa 61  Q
    ||||||||| ||||||||||||||||||||||||||||||    
T  3166476 tgagttccatctatcctaggttgtaggcaatctcagggaa 3166437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 18 - 61
Target Start/End: Original strand, 5557151 - 5557194
Alignment:
Q  18 tcagtgagttccacctatcctaggttgtaggcaatctcagggaa 61  Q
    |||||||||||||||||||||||| ||||||||||||| |||||    
T  5557151 tcagtgagttccacctatcctaggctgtaggcaatctcggggaa 5557194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 19 - 61
Target Start/End: Original strand, 25336153 - 25336195
Alignment:
Q  19 cagtgagttccacctatcctaggttgtaggcaatctcagggaa 61  Q
    ||||||||||||||||||||||| | |||||||||||||||||    
T  25336153 cagtgagttccacctatcctaggctataggcaatctcagggaa 25336195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 76; Significance: 6e-35; HSPs: 11)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 76; E-Value: 6e-35
Query Start/End: Original strand, 20 - 251
Target Start/End: Complemental strand, 1944818 - 1944587
Alignment:
Q  20 agtgagttccacctatcctaggttgtaggcaatctcagggaaacctatgatcgtcatccgtttgtatataaacataatctagggtttactattttgacat 119  Q
    |||||||||||||| |||||||||||||||||| || ||  | |||||||||| |||  || |||| ||| ||||| ||| ||||||||| ||||| |||    
T  1944818 agtgagttccacctttcctaggttgtaggcaatatcggg--atcctatgatcgccatatgtctgtacatatacatagtcttgggtttactgttttgtcat 1944721  T
Q  120 gcttatcgtagcgatatggggaatactaggatcgctgacagtatactattataaatcttgtcacaat-atatcatat-ttttatatacgtaatttattat 217  Q
    || ||||||||||||||||||||   ||||||| ||||| ||||||||| ||||||||||||| | |  |||||||| ||| |||||| ||| |||| ||    
T  1944720 gcgtatcgtagcgatatggggaagtttaggatcactgactgtatactatcataaatcttgtcatattcgtatcatatctttcatatacataa-ttataat 1944622  T
Q  218 gttagcgtggaacaaaca-attatctaagttcatt 251  Q
    |||||||||| ||||||| ||||||| ||||||||    
T  1944621 gttagcgtgggacaaacacattatctgagttcatt 1944587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 74; E-Value: 9e-34
Query Start/End: Original strand, 18 - 238
Target Start/End: Complemental strand, 1991648 - 1991428
Alignment:
Q  18 tcagtgagttccacctatcctaggttgtaggcaatctcagggaaacctatgatcgtcatccgtttgtatataaacataatctagggtttactattttgac 117  Q
    ||||||||||||||||||| || |||||| |||||||| |||||||||||||||||| |||||  ||| ||||||||||||| ||||||  | || ||      
T  1991648 tcagtgagttccacctatcataagttgtacgcaatctc-gggaaacctatgatcgtcgtccgtacgtacataaacataatcttgggtttgatgttatgtt 1991550  T
Q  118 atgcttatcgtagcgatatggggaatactaggatcgctgacagtatactattataaatcttgtcacaat-atatcatatttttatatacgtaatttatta 216  Q
     ||| | || |||| || ||||||| ||||||| |||| |  ||||||||  |||| |||||||| ||| || ||||||||| ||||||| |||||||||    
T  1991549 ctgcatgtcatagcaatttggggaaaactaggaccgctaattgtatactaccataagtcttgtcataatcatttcatattttcatatacgcaatttatta 1991450  T
Q  217 tgttagcgtggaacaaacaatt 238  Q
    ||||||| ||||||||||||||    
T  1991449 tgttagcatggaacaaacaatt 1991428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 18 - 61
Target Start/End: Original strand, 15088288 - 15088331
Alignment:
Q  18 tcagtgagttccacctatcctaggttgtaggcaatctcagggaa 61  Q
    |||||||||||||||||||||||||||||||||||| |||||||    
T  15088288 tcagtgagttccacctatcctaggttgtaggcaatcgcagggaa 15088331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 18 - 61
Target Start/End: Original strand, 22210896 - 22210939
Alignment:
Q  18 tcagtgagttccacctatcctaggttgtaggcaatctcagggaa 61  Q
    |||||||||||||||||||||||||||||||||||| |||||||    
T  22210896 tcagtgagttccacctatcctaggttgtaggcaatcgcagggaa 22210939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 18 - 72
Target Start/End: Original strand, 7064056 - 7064110
Alignment:
Q  18 tcagtgagttccacctatcctaggttgtaggcaatctcagggaaacctatgatcg 72  Q
    |||||||||||||||||||||||||||||||||||||  |||| ||||| |||||    
T  7064056 tcagtgagttccacctatcctaggttgtaggcaatcttggggacacctaagatcg 7064110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 21 - 61
Target Start/End: Complemental strand, 44193516 - 44193476
Alignment:
Q  21 gtgagttccacctatcctaggttgtaggcaatctcagggaa 61  Q
    |||||||||||||||||||||||||||||||||||| ||||    
T  44193516 gtgagttccacctatcctaggttgtaggcaatctcaaggaa 44193476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 18 - 61
Target Start/End: Original strand, 7899017 - 7899060
Alignment:
Q  18 tcagtgagttccacctatcctaggttgtaggcaatctcagggaa 61  Q
    ||||||||||||||||||||||| ||||||||||||||| ||||    
T  7899017 tcagtgagttccacctatcctagattgtaggcaatctcaaggaa 7899060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 18 - 61
Target Start/End: Original strand, 22207333 - 22207376
Alignment:
Q  18 tcagtgagttccacctatcctaggttgtaggcaatctcagggaa 61  Q
    |||||||||||||||||||||||||||||||||||  |||||||    
T  22207333 tcagtgagttccacctatcctaggttgtaggcaattgcagggaa 22207376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 18 - 61
Target Start/End: Original strand, 22219646 - 22219689
Alignment:
Q  18 tcagtgagttccacctatcctaggttgtaggcaatctcagggaa 61  Q
    |||||||||| ||||||||||||||||||||||||| |||||||    
T  22219646 tcagtgagttgcacctatcctaggttgtaggcaatcgcagggaa 22219689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 20 - 77
Target Start/End: Original strand, 17914286 - 17914342
Alignment:
Q  20 agtgagttccacctatcctaggttgtaggcaatctcagggaaacctatgatcgtcatc 77  Q
    |||||||||||||||||||||  ||||||||| |||| || |||||||||||||||||    
T  17914286 agtgagttccacctatcctagaatgtaggcaacctcaagg-aacctatgatcgtcatc 17914342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 18 - 60
Target Start/End: Original strand, 51843970 - 51844012
Alignment:
Q  18 tcagtgagttccacctatcctaggttgtaggcaatctcaggga 60  Q
    ||||||||||||||||||| || | ||||||||||||||||||    
T  51843970 tcagtgagttccacctatcttaaggtgtaggcaatctcaggga 51844012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 50; Significance: 2e-19; HSPs: 11)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 18 - 182
Target Start/End: Original strand, 27170152 - 27170312
Alignment:
Q  18 tcagtgagttccacctatcctaggttgtaggcaatctcagggaaacctatgatcgtcatccgtttgtatataaacataatctagggtttactattttgac 117  Q
    ||||||||||||| ||||| ||||||| ||||||||||  || |||||||||||  |||| || | || |||||||||||||| |||||||||||| | |    
T  27170152 tcagtgagttccatctatcataggttgaaggcaatctctagg-aacctatgatcaccatctgtctatacataaacataatcta-ggtttactatttcgtc 27170249  T
Q  118 atgcttatcgtagcgatatggggaatactaggatcgctgacagtatactattataaatcttgtca 182  Q
    |||  |||||||| ||||||||||| ||||| ||| || |  ||||||||| |||| ||||||||    
T  27170250 atg--tatcgtagtgatatggggaacactagtatcactaattgtatactatcataattcttgtca 27170312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 21 - 81
Target Start/End: Original strand, 37489404 - 37489463
Alignment:
Q  21 gtgagttccacctatcctaggttgtaggcaatctcagggaaacctatgatcgtcatccgtt 81  Q
    |||||||||||||||||||||||||||||||||||| ||||||||| ||||| ||||||||    
T  37489404 gtgagttccacctatcctaggttgtaggcaatctca-ggaaacctaggatcgccatccgtt 37489463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 18 - 61
Target Start/End: Complemental strand, 2747132 - 2747089
Alignment:
Q  18 tcagtgagttccacctatcctaggttgtaggcaatctcagggaa 61  Q
    ||||||||||||||||||||||||||||||||||||||||||||    
T  2747132 tcagtgagttccacctatcctaggttgtaggcaatctcagggaa 2747089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 18 - 61
Target Start/End: Original strand, 18111118 - 18111161
Alignment:
Q  18 tcagtgagttccacctatcctaggttgtaggcaatctcagggaa 61  Q
    ||||||||||||||||||||||||||||||||||| ||||||||    
T  18111118 tcagtgagttccacctatcctaggttgtaggcaatatcagggaa 18111161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 18 - 76
Target Start/End: Original strand, 5835303 - 5835360
Alignment:
Q  18 tcagtgagttccacctatcctaggttgtaggcaatctcagggaaacctatgatcgtcat 76  Q
    |||||||||||||||||||||||| | ||||||||||||||| |||||| |||||||||    
T  5835303 tcagtgagttccacctatcctaggctataggcaatctcaggg-aacctaggatcgtcat 5835360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 18 - 61
Target Start/End: Complemental strand, 19359927 - 19359884
Alignment:
Q  18 tcagtgagttccacctatcctaggttgtaggcaatctcagggaa 61  Q
    |||||||||||||||||||||||| ||||||||||||| |||||    
T  19359927 tcagtgagttccacctatcctaggctgtaggcaatctcggggaa 19359884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 18 - 61
Target Start/End: Original strand, 19440742 - 19440785
Alignment:
Q  18 tcagtgagttccacctatcctaggttgtaggcaatctcagggaa 61  Q
    |||||||||||||||||||||||| |||||||||||||| ||||    
T  19440742 tcagtgagttccacctatcctaggctgtaggcaatctcaaggaa 19440785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 20 - 61
Target Start/End: Complemental strand, 14521704 - 14521663
Alignment:
Q  20 agtgagttccacctatcctaggttgtaggcaatctcagggaa 61  Q
    |||||||||||||||||||||| ||||||||||||| |||||    
T  14521704 agtgagttccacctatcctaggctgtaggcaatctcggggaa 14521663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 18 - 62
Target Start/End: Original strand, 5938412 - 5938456
Alignment:
Q  18 tcagtgagttccacctatcctaggttgtaggcaatctcagggaaa 62  Q
    |||||||||||||||||||||||| | |||||||| |||||||||    
T  5938412 tcagtgagttccacctatcctaggctataggcaatttcagggaaa 5938456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 18 - 61
Target Start/End: Original strand, 28034365 - 28034408
Alignment:
Q  18 tcagtgagttccacctatcctaggttgtaggcaatctcagggaa 61  Q
    ||||||| |||||||||||||||||||| |||||||||| ||||    
T  28034365 tcagtgaattccacctatcctaggttgttggcaatctcaaggaa 28034408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 18 - 76
Target Start/End: Complemental strand, 12092556 - 12092499
Alignment:
Q  18 tcagtgagttccacctatcctaggttgtaggcaatctcagggaaacctatgatcgtcat 76  Q
    ||||||| ||||||||||  ||||||||||||||||||| || || |||||||||||||    
T  12092556 tcagtgaattccacctattttaggttgtaggcaatctcatgg-aatctatgatcgtcat 12092499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 46; Significance: 4e-17; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 20 - 77
Target Start/End: Original strand, 23213657 - 23213714
Alignment:
Q  20 agtgagttccacctatcctaggttgtaggcaatctcagggaaacctatgatcgtcatc 77  Q
    |||||||||||||||||||||||| ||||||||||| |||||||||||||||| ||||    
T  23213657 agtgagttccacctatcctaggttttaggcaatctcggggaaacctatgatcgccatc 23213714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 18 - 61
Target Start/End: Original strand, 41527905 - 41527948
Alignment:
Q  18 tcagtgagttccacctatcctaggttgtaggcaatctcagggaa 61  Q
    |||||||||||||||||||||||| ||||||||||||| |||||    
T  41527905 tcagtgagttccacctatcctaggctgtaggcaatctcggggaa 41527948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 17 - 76
Target Start/End: Complemental strand, 26075699 - 26075641
Alignment:
Q  17 atcagtgagttccacctatcctaggttgtaggcaatctcagggaaacctatgatcgtcat 76  Q
    |||||||||||||||| |||||| ||||||||||||||| ||  |||||| |||||||||    
T  26075699 atcagtgagttccaccaatcctatgttgtaggcaatctc-ggagaacctaggatcgtcat 26075641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 20 - 52
Target Start/End: Original strand, 22301912 - 22301944
Alignment:
Q  20 agtgagttccacctatcctaggttgtaggcaat 52  Q
    |||||||||||||||||||| ||||||||||||    
T  22301912 agtgagttccacctatcctaagttgtaggcaat 22301944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 44; Significance: 7e-16; HSPs: 10)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 18 - 85
Target Start/End: Original strand, 29742309 - 29742375
Alignment:
Q  18 tcagtgagttccacctatcctaggttgtaggcaatctcagggaaacctatgatcgtcatccgtttgta 85  Q
    ||||||||||||||||||  |||||||||||||||||||||| |||||||||||| |||| |||||||    
T  29742309 tcagtgagttccacctattttaggttgtaggcaatctcaggg-aacctatgatcgccatctgtttgta 29742375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 18 - 61
Target Start/End: Original strand, 31314672 - 31314715
Alignment:
Q  18 tcagtgagttccacctatcctaggttgtaggcaatctcagggaa 61  Q
    ||||||||||||||||||||||||||||||||||||||||||||    
T  31314672 tcagtgagttccacctatcctaggttgtaggcaatctcagggaa 31314715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 20 - 197
Target Start/End: Complemental strand, 33119211 - 33119036
Alignment:
Q  20 agtgagttccacctatcctaggttgtaggcaatctcagggaaacctatgatcgtcatccgtttgtatataaacataatctagggtttactattttgacat 119  Q
    |||||||||||| ||||||||  | ||||||||||   |||||||||||||||||||   |||||| ||||||||||| ||||||||  | || |    |    
T  33119211 agtgagttccacttatcctagactataggcaatctt--ggaaacctatgatcgtcatttatttgtacataaacataatttagggtttgttgttctatttt 33119114  T
Q  120 gcttatcgtagcgatatggggaatactaggatcgctgacagtatactattataaatcttgtcacaatatatcatattt 197  Q
    ||  |||||| |||| |||||||  ||||||||  |||||||||||||| |||| |||||||| |  |||||||||||    
T  33119113 gcacatcgtatcgatctggggaagtctaggatcattgacagtatactatcataattcttgtcatatcatatcatattt 33119036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 20 - 152
Target Start/End: Original strand, 27085397 - 27085529
Alignment:
Q  20 agtgagttccacctatcctaggttgtaggcaatctcagggaaacctatgatcgtcatccgtttgtatataaacataatctagggtttactattttgacat 119  Q
    |||||||||||| |||| |||| | | ||||||||| | ||||||||| ||||  |||  |||||| ||| |||||||||||||||||   || ||  ||    
T  27085397 agtgagttccacatatcataggctattggcaatctcggagaaacctataatcgcaatctatttgtacatatacataatctagggtttatctttctgtaat 27085496  T
Q  120 gcttatcgtagcgatatggggaatactaggatc 152  Q
    | ||||||||| ||| |||||||||||||||||    
T  27085497 gattatcgtagtgatctggggaatactaggatc 27085529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 18 - 57
Target Start/End: Complemental strand, 31347442 - 31347403
Alignment:
Q  18 tcagtgagttccacctatcctaggttgtaggcaatctcag 57  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  31347442 tcagtgagttccacctatcctaggttgtaggcaatctcag 31347403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 20 - 106
Target Start/End: Complemental strand, 33125441 - 33125357
Alignment:
Q  20 agtgagttccacctatcctaggttgtaggcaatctcagggaaacctatgatcgtcatccgtttgtatataaacataatctagggttt 106  Q
    |||||||||||||||||||||  ||||||| ||||   ||||||||||||| |||||   |||||| ||||||||||| ||||||||    
T  33125441 agtgagttccacctatcctagactgtaggcgatctt--ggaaacctatgattgtcatttatttgtacataaacataatttagggttt 33125357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 18 - 76
Target Start/End: Original strand, 17863256 - 17863313
Alignment:
Q  18 tcagtgagttccacctatcctaggttgtaggcaatctcagggaaacctatgatcgtcat 76  Q
    |||||||||||||||||| ||||||| || |||||||| ||| ||||||||||||||||    
T  17863256 tcagtgagttccacctattctaggttatatgcaatctc-ggggaacctatgatcgtcat 17863313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 18 - 54
Target Start/End: Original strand, 38211375 - 38211411
Alignment:
Q  18 tcagtgagttccacctatcctaggttgtaggcaatct 54  Q
    |||||||||||||||||||||| ||||||||||||||    
T  38211375 tcagtgagttccacctatcctaagttgtaggcaatct 38211411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 18 - 61
Target Start/End: Original strand, 29747172 - 29747215
Alignment:
Q  18 tcagtgagttccacctatcctaggttgtaggcaatctcagggaa 61  Q
    |||||||||||||| ||||||||||||||||| ||||| |||||    
T  29747172 tcagtgagttccacatatcctaggttgtaggcgatctcggggaa 29747215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 18 - 55
Target Start/End: Original strand, 18010938 - 18010975
Alignment:
Q  18 tcagtgagttccacctatcctaggttgtaggcaatctc 55  Q
    |||||||||||||||||||||||| || ||||||||||    
T  18010938 tcagtgagttccacctatcctaggctgcaggcaatctc 18010975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 18 - 70
Target Start/End: Complemental strand, 20920396 - 20920343
Alignment:
Q  18 tcagtgagttccacctatcctaggttgtaggcaatctcaggg-aaacctatgat 70  Q
    |||||||||||||||||||||||||||||||||||||| ||| |||||||||||    
T  20920396 tcagtgagttccacctatcctaggttgtaggcaatctcggggaaaacctatgat 20920343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 18 - 61
Target Start/End: Complemental strand, 3737920 - 3737877
Alignment:
Q  18 tcagtgagttccacctatcctaggttgtaggcaatctcagggaa 61  Q
    |||||||||||||||||| ||||||||||||| |||||||||||    
T  3737920 tcagtgagttccacctattctaggttgtaggcgatctcagggaa 3737877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 18 - 77
Target Start/End: Original strand, 4340571 - 4340629
Alignment:
Q  18 tcagtgagttccacctatcctaggttgtaggcaatctcagggaaacctatgatcgtcatc 77  Q
    |||||||||||||||||||||||| ||||||||| ||| |||||||||| |||| |||||    
T  4340571 tcagtgagttccacctatcctaggctgtaggcaacctc-gggaaacctaggatcatcatc 4340629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 18 - 61
Target Start/End: Original strand, 19802275 - 19802318
Alignment:
Q  18 tcagtgagttccacctatcctaggttgtaggcaatctcagggaa 61  Q
    |||||||||||||||||||||||| ||||||||||||| |||||    
T  19802275 tcagtgagttccacctatcctaggctgtaggcaatctcggggaa 19802318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 18 - 61
Target Start/End: Complemental strand, 21959267 - 21959224
Alignment:
Q  18 tcagtgagttccacctatcctaggttgtaggcaatctcagggaa 61  Q
    |||||||||||||||||||||||| ||||||||||||| |||||    
T  21959267 tcagtgagttccacctatcctaggctgtaggcaatctcggggaa 21959224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 18 - 77
Target Start/End: Original strand, 1454849 - 1454910
Alignment:
Q  18 tcagtgagttccacctatcctaggttgtaggcaatctcaggg--aaacctatgatcgtcatc 77  Q
    ||||||||||||| |||||||||| | ||||||||||| |||  ||||||||||||| ||||    
T  1454849 tcagtgagttccatctatcctaggctctaggcaatctcgggggaaaacctatgatcgccatc 1454910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 10)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 20 - 61
Target Start/End: Original strand, 1505368 - 1505409
Alignment:
Q  20 agtgagttccacctatcctaggttgtaggcaatctcagggaa 61  Q
    ||||||||||||||||||||||||||||||||||||||||||    
T  1505368 agtgagttccacctatcctaggttgtaggcaatctcagggaa 1505409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 18 - 77
Target Start/End: Original strand, 13701984 - 13702042
Alignment:
Q  18 tcagtgagttccacctatcctaggttgtaggcaatctcagggaaacctatgatcgtcatc 77  Q
    ||||||||||||||||||||||||||||| ||||||||| ||||||||| ||||| ||||    
T  13701984 tcagtgagttccacctatcctaggttgtacgcaatctca-ggaaacctacgatcgccatc 13702042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 18 - 77
Target Start/End: Original strand, 13712477 - 13712535
Alignment:
Q  18 tcagtgagttccacctatcctaggttgtaggcaatctcagggaaacctatgatcgtcatc 77  Q
    ||||||||||||||||||||||||||||| ||||||||| ||||||||| ||||| ||||    
T  13712477 tcagtgagttccacctatcctaggttgtacgcaatctca-ggaaacctacgatcgccatc 13712535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 18 - 72
Target Start/End: Original strand, 24627385 - 24627438
Alignment:
Q  18 tcagtgagttccacctatcctaggttgtaggcaatctcagggaaacctatgatcg 72  Q
    |||| ||||||||||||||||||| ||||||||||||||||| ||||||||||||    
T  24627385 tcagcgagttccacctatcctaggatgtaggcaatctcaggg-aacctatgatcg 24627438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 18 - 72
Target Start/End: Complemental strand, 31663935 - 31663882
Alignment:
Q  18 tcagtgagttccacctatcctaggttgtaggcaatctcagggaaacctatgatcg 72  Q
    |||||||||||||||||||||||||||||| ||||||||  ||||||||||||||    
T  31663935 tcagtgagttccacctatcctaggttgtagacaatctca-agaaacctatgatcg 31663882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 18 - 61
Target Start/End: Original strand, 5599278 - 5599321
Alignment:
Q  18 tcagtgagttccacctatcctaggttgtaggcaatctcagggaa 61  Q
    ||||||||||||| |||||||||||||||||||| |||||||||    
T  5599278 tcagtgagttccatctatcctaggttgtaggcaacctcagggaa 5599321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 22 - 77
Target Start/End: Complemental strand, 14803483 - 14803427
Alignment:
Q  22 tgagttccacctatcctaggttgtaggcaatctc-agggaaacctatgatcgtcatc 77  Q
    |||||||||||||||||||| | ||||||||||| ||||||||||| ||||| ||||    
T  14803483 tgagttccacctatcctaggctttaggcaatctcgagggaaacctacgatcgccatc 14803427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 18 - 49
Target Start/End: Complemental strand, 1604757 - 1604726
Alignment:
Q  18 tcagtgagttccacctatcctaggttgtaggc 49  Q
    ||||||||||||||||||||||||||||||||    
T  1604757 tcagtgagttccacctatcctaggttgtaggc 1604726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 22 - 61
Target Start/End: Original strand, 4852071 - 4852110
Alignment:
Q  22 tgagttccacctatcctaggttgtaggcaatctcagggaa 61  Q
    |||||||||||||||||||||||||||||| ||| |||||    
T  4852071 tgagttccacctatcctaggttgtaggcaacctcggggaa 4852110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 18 - 54
Target Start/End: Complemental strand, 20349610 - 20349574
Alignment:
Q  18 tcagtgagttccacctatcctaggttgtaggcaatct 54  Q
    |||||||||||||||||| ||||| ||||||||||||    
T  20349610 tcagtgagttccacctatactaggctgtaggcaatct 20349574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 18 - 61
Target Start/End: Complemental strand, 5131397 - 5131354
Alignment:
Q  18 tcagtgagttccacctatcctaggttgtaggcaatctcagggaa 61  Q
    |||||||||||||||||||||||||||||||||||||| |||||    
T  5131397 tcagtgagttccacctatcctaggttgtaggcaatctcggggaa 5131354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 18 - 61
Target Start/End: Complemental strand, 31113688 - 31113645
Alignment:
Q  18 tcagtgagttccacctatcctaggttgtaggcaatctcagggaa 61  Q
    |||||||||||||||||||||||| |||||||||||||| ||||    
T  31113688 tcagtgagttccacctatcctaggctgtaggcaatctcaaggaa 31113645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 18 - 61
Target Start/End: Complemental strand, 34256250 - 34256207
Alignment:
Q  18 tcagtgagttccacctatcctaggttgtaggcaatctcagggaa 61  Q
    |||||||||||||||||||||||| ||||||||||||| |||||    
T  34256250 tcagtgagttccacctatcctaggctgtaggcaatctcggggaa 34256207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 18 - 51
Target Start/End: Complemental strand, 33301185 - 33301152
Alignment:
Q  18 tcagtgagttccacctatcctaggttgtaggcaa 51  Q
    ||||||||||||| ||||||||||||||||||||    
T  33301185 tcagtgagttccatctatcctaggttgtaggcaa 33301152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0158 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: scaffold0158
Description:

Target: scaffold0158; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 18 - 61
Target Start/End: Complemental strand, 48 - 5
Alignment:
Q  18 tcagtgagttccacctatcctaggttgtaggcaatctcagggaa 61  Q
    |||||||||||||||||||||||| ||||||||||||| |||||    
T  48 tcagtgagttccacctatcctaggctgtaggcaatctcggggaa 5  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0046 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: scaffold0046
Description:

Target: scaffold0046; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 18 - 61
Target Start/End: Original strand, 89867 - 89910
Alignment:
Q  18 tcagtgagttccacctatcctaggttgtaggcaatctcagggaa 61  Q
    |||||||||||||||||||||||| ||||||||||| |||||||    
T  89867 tcagtgagttccacctatcctaggctgtaggcaatcacagggaa 89910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0043 (Bit Score: 34; Significance: 0.0000000006; HSPs: 1)
Name: scaffold0043
Description:

Target: scaffold0043; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 18 - 59
Target Start/End: Complemental strand, 70185 - 70144
Alignment:
Q  18 tcagtgagttccacctatcctaggttgtaggcaatctcaggg 59  Q
    |||||||||||||||||||||||| || ||||||||||||||    
T  70185 tcagtgagttccacctatcctaggatgcaggcaatctcaggg 70144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0060 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: scaffold0060
Description:

Target: scaffold0060; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 20 - 60
Target Start/End: Complemental strand, 45244 - 45204
Alignment:
Q  20 agtgagttccacctatcctaggttgtaggcaatctcaggga 60  Q
    |||||||||||| || |||||||||||||||||||||||||    
T  45244 agtgagttccacataccctaggttgtaggcaatctcaggga 45204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0005 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: scaffold0005
Description:

Target: scaffold0005; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 22 - 77
Target Start/End: Original strand, 36244 - 36300
Alignment:
Q  22 tgagttccacctatcctaggttgtaggcaatctc-agggaaacctatgatcgtcatc 77  Q
    |||||||||||||||||||| | ||||||||||| ||||||||||| ||||| ||||    
T  36244 tgagttccacctatcctaggctttaggcaatctcgagggaaacctacgatcgccatc 36300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0024 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: scaffold0024
Description:

Target: scaffold0024; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 18 - 74
Target Start/End: Original strand, 63495 - 63550
Alignment:
Q  18 tcagtgagttccacctatcctaggttgtaggcaatctcagggaaacctatgatcgtc 74  Q
    |||||||||||||||||||||| |||||| || ||||| ||| |||||| |||||||    
T  63495 tcagtgagttccacctatcctaagttgtatgctatctc-ggggaacctacgatcgtc 63550  T

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