View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4970_low_18 (Length: 402)
Name: NF4970_low_18
Description: NF4970
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4970_low_18 |
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Alignment Details
Target: chr8 (Bit Score: 302; Significance: 1e-170; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 302; E-Value: 1e-170
Query Start/End: Original strand, 22 - 395
Target Start/End: Complemental strand, 6284218 - 6283845
Alignment:
| Q |
22 |
aaaaccctcccacacgaaagatatcaaccttttgttggcgcaccaactagttaatcgttttccttttcgatcttccccaagcctctcacattataaatca |
121 |
Q |
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| T |
6284218 |
aaaaccctcccacgcgaaagatatcaaccttttgttggcgcaccaactagttaatcattttccttttcgatcttccccaagcttctcacattataaatca |
6284119 |
T |
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| Q |
122 |
acacaattatttaccactgcttgctttctcccttcttcctttattcaactcatcaactttttcatgttctaccgacttcttaagtattgtttcatcctct |
221 |
Q |
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| T |
6284118 |
atacaatcattgaccactgcttgctttctcctttcttcctttattcaactcatcaacttcttcaagttctaccgacttcttaagtattgtttcatcctct |
6284019 |
T |
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| Q |
222 |
atattaaaataaattttgtcattcctttgtcaacgaaaaatccctaccgcatccaactatttcctacatactctccctccacatttcctccaggtgtttc |
321 |
Q |
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| T |
6284018 |
atattaaaataaattttgtcattcctttgtaagcgaaaaatccctactgcatccaactatttcctacctactctccctccacatttcctccaggtgtttc |
6283919 |
T |
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| Q |
322 |
tggaactatagtacccccttcctctatctataatcaatggaggtgttattggaaaaacctatccttctctgctc |
395 |
Q |
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| T |
6283918 |
cagaactatcgtacccccttcctctatctataattaatggcggtgttattggaaaaacctatccttctctgctc |
6283845 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 79; E-Value: 8e-37
Query Start/End: Original strand, 48 - 193
Target Start/End: Complemental strand, 6305719 - 6305577
Alignment:
| Q |
48 |
accttttgttggcgcaccaactagttaatcgttttccttttcgatcttccccaagcctctcacattataaatcaacacaattatttaccactgcttgctt |
147 |
Q |
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| T |
6305719 |
acctttttttggcgcaccaactagttaatcattttccttttcgatct-ctccaagcctctca--ttataaatcaacacaatcattgatcactagttgctt |
6305623 |
T |
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| Q |
148 |
tctcccttcttcctttattcaactcatcaactttttcatgttctac |
193 |
Q |
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| T |
6305622 |
tctcccttcttcctttattcaacacatctgcttcttcatgttctac |
6305577 |
T |
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