View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4970_low_2 (Length: 770)
Name: NF4970_low_2
Description: NF4970
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4970_low_2 |
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Alignment Details
Target: chr1 (Bit Score: 466; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 466; E-Value: 0
Query Start/End: Original strand, 169 - 760
Target Start/End: Complemental strand, 13992083 - 13991489
Alignment:
| Q |
169 |
agtgggatgatttgataaaataaaatgcttttattgaatgccaatttaaactgattatattggcaatacatgttgtttaaacacctttaaatttgtttga |
268 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||| |
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| T |
13992083 |
agtgggatgatttgataaaataaaatgcttttattgaatgccaatttaaactgattatattggcaatacatgttgtttaaaaacctttaaatttttttga |
13991984 |
T |
|
| Q |
269 |
tattaaatttgattaannnnnnnnnngt---ggtcaagatttggttaannnnnnnnataaaggtaaaggaatatttagttaatcatgcatgatgtattgt |
365 |
Q |
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|||||||||||||||| | ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
13991983 |
tattaaatttgattaattttttaatttttttggtcaagatttggttaattttttttataaaggtaaaggaatatttagttaatcatgcatgatgtattgt |
13991884 |
T |
|
| Q |
366 |
atgatagctagatagatattgtctgccacatcatgtatttaagaataatgtggaatttcacaccgttgatatgacaaaggccaatctagctacccctttg |
465 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
13991883 |
atgatagctagatagatattgtctgccacatcatgtatttaagaataatgtggaatttcacaccgttgatatgacaaaggccaatctagctacccctttg |
13991784 |
T |
|
| Q |
466 |
tgatgctaatggtggagtattttcttgatggtgtggaacatcttattcatttaacattttgaaaaacaaattggcataagcaagttctattcaaagtctc |
565 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
13991783 |
tgatgctaatggtggagtattttcttgatggtgtggaacatcttattcatttaacattttgaaaaacaaattggcataagcaagttctattcaaagtctc |
13991684 |
T |
|
| Q |
566 |
attatttgtttgacgttttcttggtaatcatatcttaaccaaagacaaattattaggaaaaggtattctttaacaagactcaatcatgtgcgtttggttg |
665 |
Q |
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| T |
13991683 |
attatttgtttgacgttttcttggtaatcatatcttaaccaaagacaaattattaggaaaaagtattctttaacaagactcaattatgtgcgtttggttg |
13991584 |
T |
|
| Q |
666 |
tggcttggttgaatcgacacagcatcnnnnnnngggttgtttcgtattcggctctatttggaatcttttttggcactcgtttgatatcgcctatg |
760 |
Q |
| |
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||||||||||||||||||||| |||| |||||||| ||||||||||| |||||||||||||||| |||||||||||| ||||||||||| |
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| T |
13991583 |
tggcttggttgaatcgacacaacatctttttttgggttgttccgtattcggctttatttggaatctttttcggcactcgtttggtatcgcctatg |
13991489 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 65; E-Value: 4e-28
Query Start/End: Original strand, 19 - 103
Target Start/End: Complemental strand, 13992234 - 13992150
Alignment:
| Q |
19 |
catattggttaaagatgaaacccataattaaatgattgagagatctcaaacatctatcaattgtgtcaaaccaagctgatatcaa |
103 |
Q |
| |
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||||||||||||||||||||||| |||| ||||| |||||||||||||||||| |||||||||||||||||||||||| |||||| |
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| T |
13992234 |
catattggttaaagatgaaacccttaatcaaatggttgagagatctcaaacatttatcaattgtgtcaaaccaagctgttatcaa |
13992150 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 426; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 426; E-Value: 0
Query Start/End: Original strand, 169 - 760
Target Start/End: Original strand, 3966434 - 3967024
Alignment:
| Q |
169 |
agtgggatgatttgataaaataaaatgcttttattgaatgccaatttaaactgattatattggcaatacatgttgtttaaacacctttaaatttgtttga |
268 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
3966434 |
agtgggatgatttgataaaataaaatgcttttattgaatgccaatttaaactgattatgttggcaatacatgttgtttaaacacctttaaatttgtttga |
3966533 |
T |
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| Q |
269 |
tattaaatttgattaannnnnnnnnngtggtcaagatttggttaannnnnnnn-ataaaggtaaaggaatatttagttaatcatgcatgatgtattgtat |
367 |
Q |
| |
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|||| ||||||||||| ||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3966534 |
tatttaatttgattaattttttttt--tggtcaagatttgatttttttttttttataaaggtaaaggaatatttagttaatcatgcatgatgtattgtat |
3966631 |
T |
|
| Q |
368 |
gatagctagatagatattgtctgccacatcatgtatttaagaataatgtggaatttcacaccgttgatatgacaaaggccaatctagctacccctttgtg |
467 |
Q |
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| T |
3966632 |
gatagctagatagatattgtctgccacatcatgtatttaagaataatgtggaatttcacaccgttgatatgacaaaggccaatctagctacccctttgtg |
3966731 |
T |
|
| Q |
468 |
atgctaatggtggagtattttcttgatggtgtggaacatcttattcatttaacattttgaaaaacaaattggcataagcaagttctattcaaagtctcat |
567 |
Q |
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||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3966732 |
atgctaatggtggggtattttcttgatggtgtggaacatcttattcatttaacattttgaaaaacaaattggcataagcaagttctattcaaagtctcat |
3966831 |
T |
|
| Q |
568 |
tatttgtttgacgttttcttggtaatcatatcttaaccaaagacaaattattaggaaaaggtattctttaacaagactcaatcatgtgcgtttggttgtg |
667 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||| ||||||| ||||||||| |
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| T |
3966832 |
tatttgtttgacgttttcttggtaatcatatcttaaccaaagataaattattaggaaaatgtattctttaacaagactcaattatgtgcgcttggttgtg |
3966931 |
T |
|
| Q |
668 |
gcttggttgaatcgacacagcatcnnnnnnngggttgtttcgtattcggctctatttggaatcttttttggcactcgtttgatatcgcctatg |
760 |
Q |
| |
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||||||||||||||||||| |||| || ||||| ||||||||||||| ||||||||||| || |||||| |||| ||||||||||| |
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| T |
3966932 |
gcttggttgaatcgacacaacatctttttttggattgttccgtattcggctctgtttggaatcttcttcggcactgatttggtatcgcctatg |
3967024 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 73; E-Value: 6e-33
Query Start/End: Original strand, 19 - 103
Target Start/End: Original strand, 3966306 - 3966390
Alignment:
| Q |
19 |
catattggttaaagatgaaacccataattaaatgattgagagatctcaaacatctatcaattgtgtcaaaccaagctgatatcaa |
103 |
Q |
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||||||||||||||||||||||| |||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3966306 |
catattggttaaagatgaaacccttaatcaaatggttgagagatctcaaacatctatcaattgtgtcaaaccaagctgatatcaa |
3966390 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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