View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4970_low_22 (Length: 385)
Name: NF4970_low_22
Description: NF4970
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4970_low_22 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 309; Significance: 1e-174; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 309; E-Value: 1e-174
Query Start/End: Original strand, 10 - 370
Target Start/End: Original strand, 14956063 - 14956425
Alignment:
| Q |
10 |
aatatatgatccttattgtgacatgcaagcacacgtcgcatactcatcaatccttatatatacacatgcatctctccaaatcttttaatacaaaaa---c |
106 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||| | |
|
|
| T |
14956063 |
aatatatgatccttattgtgacatgcaagcacacgtcgcatactcatcaatccttatatatacacatgcatctctacaaatcttt-aatacaaaaattac |
14956161 |
T |
|
| Q |
107 |
caaccaacactaagtgttnnnnnnntgtcacccttattctattactctctcctttctctatccttcatcataaccatcaaaattttactcaaaatcacat |
206 |
Q |
| |
|
|||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14956162 |
caaccaacactaagtgttaaaaaaatgtcatccttattctattactctctcctttctctatccttcatcataaccatcaaaattttactcaaaatcacat |
14956261 |
T |
|
| Q |
207 |
caagaagactaaaaaaccttccaccaggtccaccaacaattcctataattggcaacctccaccacctaaaacaccctctccaccgtaccttcacaaccct |
306 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14956262 |
caagaaggctaaaaaaccttccaccaggtccaccaacaattcctataattggcaacctccaccacctaaaacaccctctccaccgtaccttcacaaccct |
14956361 |
T |
|
| Q |
307 |
atcacaaacatacggtgacatcttttcactttggttcggttcgcgcctagttgtcgttgtttct |
370 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14956362 |
atcacaaacatacggtgacatcttttcactttggttcggttcgcgcctagttgtcgttgtttct |
14956425 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 199 - 369
Target Start/End: Complemental strand, 39587252 - 39587082
Alignment:
| Q |
199 |
aatcacatcaagaagactaaaaaaccttccaccaggtccaccaacaattcctataattggcaacctccaccacctaaaacaccctctccaccgtaccttc |
298 |
Q |
| |
|
||||||| |||||| ||| ||||||||||||||||||||| ||| ||||| || || |||||| | || || || |||||||| || |||||||||||| |
|
|
| T |
39587252 |
aatcacaacaagaaaactcaaaaaccttccaccaggtccatcaagtattccaattataggcaacattcatcaactcaaacacccacttcaccgtaccttc |
39587153 |
T |
|
| Q |
299 |
acaaccctatcacaaacatacggtgacatcttttcactttggttcggttcgcgcctagttgtcgttgtttc |
369 |
Q |
| |
|
|| || ||||||| ||||||| | ||||||| || |||||||||| || | || ||||||||||| |
|
|
| T |
39587152 |
cacactctctcacaaaaatacggtcaagtcttttccctacggttcggttcacgttttgtcgtcgttgtttc |
39587082 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 32; Significance: 0.000000009; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 218 - 369
Target Start/End: Original strand, 5883891 - 5884042
Alignment:
| Q |
218 |
aaaaaccttccaccaggtccaccaacaattcctataattggcaacctccaccacctaaaacaccctctccaccgtaccttcacaaccctatcacaaacat |
317 |
Q |
| |
|
||||||||||||||||| |||| | ||||||||||||| ||||| ||||| || ||||| || ||||||| || ||| ||| ||||||||| || |
|
|
| T |
5883891 |
aaaaaccttccaccaggcccacaatgtcttcctataattggaaaccttcaccaactcaaacaaccactccaccacacattccacaccttatcacaaaaat |
5883990 |
T |
|
| Q |
318 |
acggtgacatcttttcactttggttcggttcgcgcctagttgtcgttgtttc |
369 |
Q |
| |
|
| || | |||||||| |||||||||||||| || || || || |||||||| |
|
|
| T |
5883991 |
atggccaaatcttttctctttggttcggttctcgtctcgtcgttgttgtttc |
5884042 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University