View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4970_low_3 (Length: 701)
Name: NF4970_low_3
Description: NF4970
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4970_low_3 |
 | |
|
| [»] scaffold0288 (1 HSPs) |
| | |
|
| [»] scaffold0477 (2 HSPs) |
| | |
|
Alignment Details
Target: chr7 (Bit Score: 314; Significance: 1e-177; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 314; E-Value: 1e-177
Query Start/End: Original strand, 282 - 683
Target Start/End: Complemental strand, 3087518 - 3087117
Alignment:
| Q |
282 |
tatgaataatattagtaacgaactctttgtcaaacacttttcaacacactctttctgatttacattcatgagtcccacataatttgacgagactcataaa |
381 |
Q |
| |
|
||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||| |||| ||||||||| |
|
|
| T |
3087518 |
tatgaataatattagtaacaaactctttgtcaaacacttttcaacgcactctttctgattaacattcatgagtcccacataatttaacgaaactcataaa |
3087419 |
T |
|
| Q |
382 |
tgttaaccaatnnnnnnngtgtgttagaaagcgttagagagtgtattcctagtaagctattgacttcttctataattatgacaagcagatgagatttta- |
480 |
Q |
| |
|
||| ||||| | ||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||| |||||| ||| |
|
|
| T |
3087418 |
tgtaaaccagtgaaaaaagtgtgttagaaagcgtt-gagagtgtattcctagcaagctattgacttcttctataattatgacaagcatatgagagtttct |
3087320 |
T |
|
| Q |
481 |
gacaccaaagtagactgtattccaggattgcagaactttcgactgaaggatctgcctgacataataagggttgaagatcgaaaagatcccattttagaat |
580 |
Q |
| |
|
||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
3087319 |
gacgccagagtagactgtattccaggattgcagaactttcgactgaaggatctgcctgacataataagggttgaagatcgaaaagatcccattttagaat |
3087220 |
T |
|
| Q |
581 |
ttgtcattgaagtgggggatagcttacacaaagcctctgctattatctttaacacttatgatgaacttgagagtgatgtaatgaatgcgctatattctgt |
680 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3087219 |
ttgtcattgaagtgggggatagcttacacaaagcctctgctattatctttaacacttatgatgaacttgagagtgatgtaatgaatgcgctatattctgt |
3087120 |
T |
|
| Q |
681 |
gtt |
683 |
Q |
| |
|
||| |
|
|
| T |
3087119 |
gtt |
3087117 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 127; E-Value: 3e-65
Query Start/End: Original strand, 21 - 235
Target Start/End: Complemental strand, 3087820 - 3087598
Alignment:
| Q |
21 |
aggtctaacaccgctcaaaggtaataatttgcgatctctctctc--------ataaatctaacattcgtagctatgtaatatgagagtatgttcgttcaa |
112 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||||||||||| |||||| |||||||||| ||||||||||||||||||||||||||| | |
|
|
| T |
3087820 |
aggtctaataccgctcaaaggtaataatttgcgatctctctctctttctctcataaatataacattcgtggctatgtaatatgagagtatgttcgtttga |
3087721 |
T |
|
| Q |
113 |
atttgtttcataaagga-aatttagtttaaagactttatagcaagttgtcgagtagatatactcaatgagaacttttaatttgacggttggattgataaa |
211 |
Q |
| |
|
||||||||||||||| | |||||||||| ||||| ||||||||| ||||||||| |||||||| ||||||||||||||||| |||||||||||||||||| |
|
|
| T |
3087720 |
atttgtttcataaagtataatttagtttgaagaccttatagcaatttgtcgagttgatatacttaatgagaacttttaattcgacggttggattgataaa |
3087621 |
T |
|
| Q |
212 |
atttaatattgataatgagtcatt |
235 |
Q |
| |
|
||||||||| || ||||||||||| |
|
|
| T |
3087620 |
atttaatatcga-aatgagtcatt |
3087598 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 79; Significance: 1e-36; HSPs: 13)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 477 - 683
Target Start/End: Original strand, 4299050 - 4299256
Alignment:
| Q |
477 |
tttagacaccaaagtagactgtattccaggattgcagaactttcgactgaaggatctgcctgacataataagggttgaagatcgaaaagatcccatttta |
576 |
Q |
| |
|
|||||||| |||| |||||||||||||||||||||||||||||||| |||| ||||| ||||| | |||||| | | ||| ||| ||| ||| || |
|
|
| T |
4299050 |
tttagacatcaaactagactgtattccaggattgcagaactttcgattgaaagatctaactgactttataaggagtacaaatccaaatgatgtcatggta |
4299149 |
T |
|
| Q |
577 |
gaatttgtcattgaagtgggggatagcttacacaaagcctctgctattatctttaacacttatgatgaacttgagagtgatgtaatgaatgcgctatatt |
676 |
Q |
| |
|
||||||| |||||||| || ||||| || |||||||| ||||||||| | ||||| ||||||||||||||||||||||||||||||||||| || |||| |
|
|
| T |
4299150 |
gaatttgccattgaagcggcagatagatttcacaaagcatctgctattgtttttaatacttatgatgaacttgagagtgatgtaatgaatgctctctatt |
4299249 |
T |
|
| Q |
677 |
ctgtgtt |
683 |
Q |
| |
|
|| |||| |
|
|
| T |
4299250 |
ctatgtt |
4299256 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 53; E-Value: 5e-21
Query Start/End: Original strand, 481 - 677
Target Start/End: Complemental strand, 4623039 - 4622843
Alignment:
| Q |
481 |
gacaccaaagtagactgtattccaggattgcagaactttcgactgaaggatctgcctgacataataagggttgaagatcgaaaagatcccattttagaat |
580 |
Q |
| |
|
|||||| ||||||||||| |||| |||||| |||||||||| | |||||| |||||||| | |||||| || ||| | ||| ||| ||| |||||| |
|
|
| T |
4623039 |
gacaccgaagtagactgtgttcctggattgaagaactttcggttaaaggatttgcctgactttataaggattacagagccaaatgatgtcatggtagaat |
4622940 |
T |
|
| Q |
581 |
ttgtcattgaagtgggggatagcttacacaaagcctctgctattatctttaacacttatgatgaacttgagagtgatgtaatgaatgcgctatattc |
677 |
Q |
| |
|
|| ||||||||| || || | || |||||| ||||||||||||| ||||| |||||| |||||||||||| ||||| ||||||||||| ||||| |
|
|
| T |
4622939 |
ttctcattgaagcggcagaacgatttcacaaatcctctgctattatttttaatacttataatgaacttgagactgatgcgatgaatgcgctctattc |
4622843 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 477 - 678
Target Start/End: Complemental strand, 4626854 - 4626653
Alignment:
| Q |
477 |
tttagacaccaaagtagactgtattccaggattgcagaactttcgactgaaggatctgcctgacataataagggttgaagatcgaaaagatcccatttta |
576 |
Q |
| |
|
||||||||||||| |||| |||||||| ||||||||||||||||| |||||||| || | | || | |||||| | ||| || ||| ||| || |
|
|
| T |
4626854 |
tttagacaccaaactagattgtattcccggattgcagaactttcggctgaaggaccttcttaactttataaggacaacaaatcctaatgatgtcatggta |
4626755 |
T |
|
| Q |
577 |
gaatttgtcattgaagtgggggatagcttacacaaagcctctgctattatctttaacacttatgatgaacttgagagtgatgtaatgaatgcgctatatt |
676 |
Q |
| |
|
|||||| ||||||||| || ||||| || |||| ||| || |||||| | || |||||||| |||||||||||| ||||||||||||||||||| |||| |
|
|
| T |
4626754 |
gaatttctcattgaagcggcagatagatttcacagagcatcggctattgttttcaacacttacgatgaacttgagggtgatgtaatgaatgcgctctatt |
4626655 |
T |
|
| Q |
677 |
ct |
678 |
Q |
| |
|
|| |
|
|
| T |
4626654 |
ct |
4626653 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 481 - 549
Target Start/End: Complemental strand, 4558024 - 4557956
Alignment:
| Q |
481 |
gacaccaaagtagactgtattccaggattgcagaactttcgactgaaggatctgcctgacataataagg |
549 |
Q |
| |
|
||||| ||||| || ||||||||||||||||||||||||||||||||||||||||||||| | |||||| |
|
|
| T |
4558024 |
gacactaaagtggattgtattccaggattgcagaactttcgactgaaggatctgcctgactttataagg |
4557956 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 628 - 683
Target Start/End: Original strand, 4259534 - 4259589
Alignment:
| Q |
628 |
tttaacacttatgatgaacttgagagtgatgtaatgaatgcgctatattctgtgtt |
683 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| ||| |||||| |||| |
|
|
| T |
4259534 |
tttaacacttatgatgaacttgagagtgatgtaatgaatgtgctctattctatgtt |
4259589 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 481 - 667
Target Start/End: Complemental strand, 4586535 - 4586349
Alignment:
| Q |
481 |
gacaccaaagtagactgtattccaggattgcagaactttcgactgaaggatctgcctgacataataagggttgaagatcgaaaagatcccattttagaat |
580 |
Q |
| |
|
||||| ||||| |||||||||||||||||| ||||||||||||| |||||| |||||||| | |||||| || |||| ||| ||| | || |||||| |
|
|
| T |
4586535 |
gacactaaagtggactgtattccaggattggagaactttcgactaaaggatttgcctgactttataaggattactgatccaaatgattcgatcatagaat |
4586436 |
T |
|
| Q |
581 |
ttgtcattgaagtgg--gggatagcttacacaaagcctctgctattatctttaacacttatgatgaacttgagagtgatgtaatgaatg |
667 |
Q |
| |
|
|| ||||||||| | || | ||| ||||||| ||||||| |||| ||||| |||| |||||||||||||| |||||||| |||| |
|
|
| T |
4586435 |
ttatcattgaaggcgcaggaacggct--cacaaagactctgcttttatttttaatacttctgatgaacttgagaaggatgtaataaatg |
4586349 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 157 - 238
Target Start/End: Complemental strand, 4623217 - 4623136
Alignment:
| Q |
157 |
ttgtcgagtagatatactcaatgagaacttttaatttgacggttggattgataaaatttaatattgataatgagtcattaag |
238 |
Q |
| |
|
|||| |||| |||||||||||| |||| ||||||||||||||||||||||||||||| | || || | ||||||| |||||| |
|
|
| T |
4623217 |
ttgttgagttgatatactcaataagaatttttaatttgacggttggattgataaaatctgatgtttacaatgagttattaag |
4623136 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #8
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 487 - 533
Target Start/End: Original strand, 4612957 - 4613003
Alignment:
| Q |
487 |
aaagtagactgtattccaggattgcagaactttcgactgaaggatct |
533 |
Q |
| |
|
||||| |||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
4612957 |
aaagtggactgtattcaaggattgcagaactttcgactgaaggatct |
4613003 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #9
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 612 - 668
Target Start/End: Original strand, 4255985 - 4256041
Alignment:
| Q |
612 |
agcctctgctattatctttaacacttatgatgaacttgagagtgatgtaatgaatgc |
668 |
Q |
| |
|
||||||||||||| | |||||||||||| ||||||||||||| |||||| ||||||| |
|
|
| T |
4255985 |
agcctctgctattgtttttaacacttataatgaacttgagagcgatgtattgaatgc |
4256041 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #10
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 641 - 683
Target Start/End: Complemental strand, 4602531 - 4602489
Alignment:
| Q |
641 |
atgaacttgagagtgatgtaatgaatgcgctatattctgtgtt |
683 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||||| |||| |
|
|
| T |
4602531 |
atgaacttgagagtgatgtaatgaatgcactatattctatgtt |
4602489 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #11
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 607 - 666
Target Start/End: Complemental strand, 3172514 - 3172455
Alignment:
| Q |
607 |
cacaaagcctctgctattatctttaacacttatgatgaacttgagagtgatgtaatgaat |
666 |
Q |
| |
|
|||||||| ||||||||| | || ||||||| | ||||||||||||||||||| |||||| |
|
|
| T |
3172514 |
cacaaagcttctgctattgttttcaacacttctaatgaacttgagagtgatgttatgaat |
3172455 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 481 - 538
Target Start/End: Complemental strand, 4571871 - 4571814
Alignment:
| Q |
481 |
gacaccaaagtagactgtattccaggattgcagaactttcgactgaaggatctgcctg |
538 |
Q |
| |
|
||||| ||||| |||||||| |||||| || ||||||||||||||| |||| |||||| |
|
|
| T |
4571871 |
gacactaaagtggactgtatgccaggactgaagaactttcgactgagggatttgcctg |
4571814 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #13
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 487 - 539
Target Start/End: Complemental strand, 4599063 - 4599011
Alignment:
| Q |
487 |
aaagtagactgtattccaggattgcagaactttcgactgaaggatctgcctga |
539 |
Q |
| |
|
|||||||| |||||||| ||| |||| |||||||||||||| ||||| ||||| |
|
|
| T |
4599063 |
aaagtagattgtattcctggactgcaaaactttcgactgaaagatcttcctga |
4599011 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 45; Significance: 3e-16; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 481 - 549
Target Start/End: Original strand, 16685519 - 16685587
Alignment:
| Q |
481 |
gacaccaaagtagactgtattccaggattgcagaactttcgactgaaggatctgcctgacataataagg |
549 |
Q |
| |
|
||||| ||||| ||||||||||||||||||||||| ||||||||||||||||||||||| | |||||| |
|
|
| T |
16685519 |
gacactaaagtggactgtattccaggattgcagaatattcgactgaaggatctgcctgactttataagg |
16685587 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 575 - 667
Target Start/End: Original strand, 20863170 - 20863262
Alignment:
| Q |
575 |
tagaatttgtcattgaagtgggggatagcttacacaaagcctctgctattatctttaacacttatgatgaacttgagagtgatgtaatgaatg |
667 |
Q |
| |
|
|||||||| |||||||||| | ||||| || |||| ||||||||||||| | || || |||| |||| |||||||||||||| ||||||| |
|
|
| T |
20863170 |
tagaatttctcattgaagtagtagatagatttcacagagcctctgctattgttttcaatactttcaatgagcttgagagtgatgttatgaatg |
20863262 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 41; Significance: 0.00000000000007; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 619 - 683
Target Start/End: Complemental strand, 24107136 - 24107072
Alignment:
| Q |
619 |
gctattatctttaacacttatgatgaacttgagagtgatgtaatgaatgcgctatattctgtgtt |
683 |
Q |
| |
|
|||||| | |||||| |||||||||||||||||||||||||||||||| |||| |||||| |||| |
|
|
| T |
24107136 |
gctattgtttttaacgcttatgatgaacttgagagtgatgtaatgaatacgctctattctatgtt |
24107072 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0288 (Bit Score: 37; Significance: 0.00000000002; HSPs: 1)
Name: scaffold0288
Description:
Target: scaffold0288; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 607 - 671
Target Start/End: Original strand, 3077 - 3141
Alignment:
| Q |
607 |
cacaaagcctctgctattatctttaacacttatgatgaacttgagagtgatgtaatgaatgcgct |
671 |
Q |
| |
|
|||| ||| ||||| ||| | |||||||||||| |||||||||||||||||||| |||||||||| |
|
|
| T |
3077 |
cacagagcttctgcaattgtttttaacacttataatgaacttgagagtgatgtactgaatgcgct |
3141 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0477 (Bit Score: 34; Significance: 0.000000001; HSPs: 2)
Name: scaffold0477
Description:
Target: scaffold0477; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 489 - 530
Target Start/End: Original strand, 3930 - 3971
Alignment:
| Q |
489 |
agtagactgtattccaggattgcagaactttcgactgaagga |
530 |
Q |
| |
|
||||||| ||||||||||||||||||||||||| |||||||| |
|
|
| T |
3930 |
agtagacggtattccaggattgcagaactttcggctgaagga |
3971 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0477; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 598 - 683
Target Start/End: Original strand, 4039 - 4124
Alignment:
| Q |
598 |
gatagcttacacaaagcctctgctattatctttaacacttatgatgaacttgagagtgatgtaatgaatgcgctatattctgtgtt |
683 |
Q |
| |
|
||||| || ||||||||||| ||||| | || |||||||| |||||||||||||| | |||| ||||||| || |||||| |||| |
|
|
| T |
4039 |
gatagattccacaaagcctcgactattgttttcaacacttacgatgaacttgagagcggtgtattgaatgctctctattctatgtt |
4124 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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