View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4970_low_31 (Length: 336)

Name: NF4970_low_31
Description: NF4970
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4970_low_31
NF4970_low_31
[»] chr2 (2 HSPs)
chr2 (23-336)||(4635593-4635903)
chr2 (88-251)||(4658806-4658969)


Alignment Details
Target: chr2 (Bit Score: 276; Significance: 1e-154; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 276; E-Value: 1e-154
Query Start/End: Original strand, 23 - 336
Target Start/End: Original strand, 4635593 - 4635903
Alignment:
Q  23 gacaaaatggtgcaacaaattaacataattgaatttagtaaaagtactgaattgaggtctaatcttgcagactgccatgaagttcttgcaaactcattat 122  Q
    ||||||||||  ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  4635593 gacaaaatggatcaacaaattaacataattgaatttagtaaaattactgaattgaggtctaatcttgcagactgccatgaagtttttgcaaactcattat 4635692  T
Q  123 ttcttatgggagagattggaggtaacgacttcaattatcctttatttatacgaaggagcatagtagagattaaaacatacgtgccacatgtaatcaatgc 222  Q
    |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||    
T  4635693 ttcttatgggagagatcggaggtaacgacttcaattatcctttatttatacgaaggagcatagtagagattaaaacatacgtgccacatgtaatcagtgc 4635792  T
Q  223 aatcacttcagcaatcaatgtaagattatagtattatatgaagcaatatctgtctgcattactattattcgaatttcaactttccaagcatacttaattt 322  Q
    ||||||||||||||||||||||||||||   |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4635793 aatcacttcagcaatcaatgtaagatta---tattatatgaagcaatatctgtctgcattactattattcgaatttcaactttccaagcatacttaattt 4635889  T
Q  323 tctattttatgtct 336  Q
    ||||||||||||||    
T  4635890 tctattttatgtct 4635903  T

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Target: chr2; HSP #2
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 88 - 251
Target Start/End: Original strand, 4658806 - 4658969
Alignment:
Q  88 tgcagactgccatgaagttcttgcaaactcattatttcttatgggagagattggaggtaacgacttcaattatcctttatttatacgaaggagcatagta 187  Q
    ||||| ||||||||||||||||| ||| |||||||||||| |||| ||||||||||| |||||||||||||||||||||  |||||||  |||||||  |    
T  4658806 tgcagcctgccatgaagttcttggaaagtcattatttcttgtgggggagattggaggcaacgacttcaattatcctttacatatacgacagagcataaca 4658905  T
Q  188 gagattaaaacatacgtgccacatgtaatcaatgcaatcacttcagcaatcaatgtaagattat 251  Q
     || |||||  ||| || |||||||||||||||||||| |||| |||||| |||||||||||||    
T  4658906 aagcttaaagaatatgtaccacatgtaatcaatgcaataactttagcaattaatgtaagattat 4658969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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