View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4970_low_35 (Length: 318)
Name: NF4970_low_35
Description: NF4970
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4970_low_35 |
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Alignment Details
Target: chr5 (Bit Score: 147; Significance: 2e-77; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 147; E-Value: 2e-77
Query Start/End: Original strand, 13 - 227
Target Start/End: Original strand, 30502560 - 30502761
Alignment:
| Q |
13 |
atacttcactatacatttatggcgatacttaacactctcaataattaataactctagttacgacatcccagcttgaaggtgtgtgacgagtatctagtat |
112 |
Q |
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| T |
30502560 |
atacttcaccatacatttatggcgatacttaacactctcaataattaataactctagttacgacattccagcttgaaggtgtgtgacgagtatctagtat |
30502659 |
T |
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| Q |
113 |
ctaaccgttgtgtttgacaccaacactatactgctatcaatgtcactgtcgtatttagtgtcggcgtcaatgcttcgtagattaataatcatacttatgt |
212 |
Q |
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|||||||||||||||| ||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||| ||||||| |
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| T |
30502660 |
ctaaccgttgtgtttg-------------actgctatcaatgtcactgtcgtatttagtgtctgcctcaatgcttcgtagattaataatcatccttatgt |
30502746 |
T |
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| Q |
213 |
aaaattgttacacac |
227 |
Q |
| |
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||||||||| ||||| |
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| T |
30502747 |
aaaattgttgcacac |
30502761 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 147; E-Value: 2e-77
Query Start/End: Original strand, 13 - 227
Target Start/End: Original strand, 30542903 - 30543104
Alignment:
| Q |
13 |
atacttcactatacatttatggcgatacttaacactctcaataattaataactctagttacgacatcccagcttgaaggtgtgtgacgagtatctagtat |
112 |
Q |
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||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
30542903 |
atacttcaccatacatttatggcgatacttaacactctcaataattaataactctagttacgacattccagcttgaaggtgtgtgacgagtatctagtat |
30543002 |
T |
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| Q |
113 |
ctaaccgttgtgtttgacaccaacactatactgctatcaatgtcactgtcgtatttagtgtcggcgtcaatgcttcgtagattaataatcatacttatgt |
212 |
Q |
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|||||||||||||||| ||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||| ||||||| |
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| T |
30543003 |
ctaaccgttgtgtttg-------------actgctatcaatgtcactgtcgtatttagtgtctgcctcaatgcttcgtagattaataatcatccttatgt |
30543089 |
T |
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| Q |
213 |
aaaattgttacacac |
227 |
Q |
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||||||||| ||||| |
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| T |
30543090 |
aaaattgttgcacac |
30543104 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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