View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4970_low_36 (Length: 309)
Name: NF4970_low_36
Description: NF4970
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4970_low_36 |
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Alignment Details
Target: chr3 (Bit Score: 221; Significance: 1e-121; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 221; E-Value: 1e-121
Query Start/End: Original strand, 64 - 292
Target Start/End: Complemental strand, 25940972 - 25940745
Alignment:
| Q |
64 |
tcaagaacccagaaagaatatcgacattacctcaaccctttcattgattttcagctttgattgcgagtttgatgaagtctcgaaaccctccattgatagg |
163 |
Q |
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| T |
25940972 |
tcaagaacccagaaagaatatcgacattacctcaaccctttcattgattttcagctttgattgcgagtttgatgaagtctcgaaaccctccattgatagg |
25940873 |
T |
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| Q |
164 |
gtttggagcttccaacgttttcttcgtattttgttgaaacaggttttgttactgaacaatgtaggttttatacgagagaaacaaaaaagagaaaaataag |
263 |
Q |
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| T |
25940872 |
gtttggagcttccaacgttttcttcgtattttgttgaaacaggttttgttactgaacaatgtaggttttatacgagagaaacaaaaaagagaaaaataag |
25940773 |
T |
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| Q |
264 |
gtaaaatcttttgttgtttttgatttgat |
292 |
Q |
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| T |
25940772 |
gtaaaat-ttttgttgtttttgatttgat |
25940745 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 33
Target Start/End: Complemental strand, 25941035 - 25941003
Alignment:
| Q |
1 |
tcacattatcaacaacaggattcaagaacccgc |
33 |
Q |
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| T |
25941035 |
tcacattatcaacaataggattcaagaacccgc |
25941003 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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