View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4970_low_4 (Length: 672)
Name: NF4970_low_4
Description: NF4970
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4970_low_4 |
 | |
|
| [»] scaffold0725 (1 HSPs) |
| | |
|
| [»] scaffold0088 (1 HSPs) |
| | |
|
| [»] scaffold0005 (1 HSPs) |
| | |
|
Alignment Details
Target: chr7 (Bit Score: 400; Significance: 0; HSPs: 6)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 400; E-Value: 0
Query Start/End: Original strand, 128 - 655
Target Start/End: Complemental strand, 32979977 - 32979453
Alignment:
| Q |
128 |
aaaggatatatcttttatcaaaaaaggaagnnnnnnnntacaaaggatatatctatagaagcctcattaacaaattggatcggtatgtacagtgtaaggt |
227 |
Q |
| |
|
|||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32979977 |
aaaggatatatcttctatcaaaaaaggaa--aaaaaaatacaaaggatatatctatagaagcctcattaacaaattggatcggtatgtacagtgtaaggt |
32979880 |
T |
|
| Q |
228 |
ttctgaaagnnnnnnnnnngtttacttttccttttgttgataaattgtacttgactttaatccaaatgattctaagatcacaccccaattcaaaccctcg |
327 |
Q |
| |
|
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32979879 |
ttctgaaagaaaaaaaaa-gtttacttttccttttgttgataaattgtacttgactttaatccaaatgattctaagatcacaccccaattcaaaccctcg |
32979781 |
T |
|
| Q |
328 |
atttacaagatgtagccggtcagggtggtggtgcgacgagtgacaccaatcctctgcaccacctctaaacgccatatatgtcggcgccagcgttaaggat |
427 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||| |||||||||| |
|
|
| T |
32979780 |
atttacaagatgtagccggtcagggtggtggtgcgacgagtgacaccagtcctctgcaccacctctaaacgccatatctgtcggcgccaacgttaaggat |
32979681 |
T |
|
| Q |
428 |
gttgttctccgatgatcttgtgtattttggttgtttttgttcctcttcaaaacggcggcgacnnnnnnncgttttgaactgttgcgtgttttttgttggt |
527 |
Q |
| |
|
|||||||||||||| |||||||| |||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
32979680 |
gttgttctccgatggtcttgtgtgtttttgttgtttttgttcctcttcaaaacggcggcgactttttttcgttttgaactgttgcgtgttttttgttggt |
32979581 |
T |
|
| Q |
528 |
gtgttatggtggagtaggtcatggttttggcggtgataggacgtgaaggtggtgatgacatggtggttgtgcagtggtggcgacgatgttgttttggtgg |
627 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
32979580 |
gtgttgtggtggagtaggtcatggttttggcggtgataggaggtgaaggtggtgatgacatggtggttgtgcagtggtggcgacgatgctgttttggtgg |
32979481 |
T |
|
| Q |
628 |
atcggtggagagaagagtctgacttatg |
655 |
Q |
| |
|
|||||||||||||||||||||||||||| |
|
|
| T |
32979480 |
atcggtggagagaagagtctgacttatg |
32979453 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 115; E-Value: 5e-58
Query Start/End: Original strand, 19 - 141
Target Start/End: Complemental strand, 32980122 - 32980000
Alignment:
| Q |
19 |
ccaactgtggtgggtctttcgttactggatgataactcaacttcattctacattgataattcaaggcgctcgagtctaaatttaattttactcaattctt |
118 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
32980122 |
ccaactgtggtgggtctttcgttactggatgataactcaactgcattctacattgataattcaaggtgctcgagtctaaatttaattttactcaattctt |
32980023 |
T |
|
| Q |
119 |
gataaataaaaaggatatatctt |
141 |
Q |
| |
|
||||||||||||||||||||||| |
|
|
| T |
32980022 |
gataaataaaaaggatatatctt |
32980000 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 96; E-Value: 1e-46
Query Start/End: Original strand, 328 - 652
Target Start/End: Complemental strand, 10366312 - 10365992
Alignment:
| Q |
328 |
atttacaagatgtagccggtcagggtggtggtgcgacgagtgacaccaatcctctgcaccacctctaaacgccatatatgtcggcgccagcgttaaggat |
427 |
Q |
| |
|
|||| |||||||||||| || ||||||||||||| ||||||||||||| |||| ||||||||||||||| ||| || ||| |||||| |||||||| | |
|
|
| T |
10366312 |
atttgcaagatgtagccagttagggtggtggtgcaacgagtgacaccagtccttcgcaccacctctaaacaccagatctgtaggcgccgacgttaaggtt |
10366213 |
T |
|
| Q |
428 |
gttgttctccgatgatcttgtgtattttggttgtttttgttcctcttcaaaacggcggcgacnnnnnnncgttttgaactgttgcgtgttttttgttggt |
527 |
Q |
| |
|
| ||||||| |||| |||||||| |||||||||||||||||||||||| ||| || || ||| ||||||| |||| | |||| || ||| |
|
|
| T |
10366212 |
gctgttctctgatggtcttgtgtgttttggttgtttttgttcctcttcgaaatggaggagac-ttttttcgttttggcgtgtt--ttattttctggtggg |
10366116 |
T |
|
| Q |
528 |
gtgttatggtggagtaggtcatggttttggcggtgataggacgtgaaggtggtgatgacatggtggttgtgcagtggtggcgacgatgttgttttggtgg |
627 |
Q |
| |
|
||||| |||||||||||| || ||||||| | |||||| | ||||||||||||||||| || |||| |||| ||||| ||| |||| || |||||||| |
|
|
| T |
10366115 |
gtgttgtggtggagtagggcacggttttgcagatgatagaaggtgaaggtggtgatgacgcggaggttttgcaatggtgtcgatgatgctg-tttggtgg |
10366017 |
T |
|
| Q |
628 |
atcggtggagagaagagtctgactt |
652 |
Q |
| |
|
||||||||||||||||||||||||| |
|
|
| T |
10366016 |
atcggtggagagaagagtctgactt |
10365992 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 523 - 655
Target Start/End: Original strand, 34293338 - 34293470
Alignment:
| Q |
523 |
ttggtgtgttatggtggagtaggtcatggttttggcggtgataggacgtgaaggtggtgatgacatggtggttgtgcagtggtggcgacgatgttgtttt |
622 |
Q |
| |
|
|||||||||| |||||||||||| || | |||||||| |||||| | |||||||||||||||| |||||||| |||||||||| |||| ||| |||||| |
|
|
| T |
34293338 |
ttggtgtgttgtggtggagtagggcacgattttggcgttgatagaagatgaaggtggtgatgacgtggtggttttgcagtggtgtcgacaatgctgtttt |
34293437 |
T |
|
| Q |
623 |
ggtggatcggtggagagaagagtctgacttatg |
655 |
Q |
| |
|
|||||||||||||||||||||| |||||||||| |
|
|
| T |
34293438 |
ggtggatcggtggagagaagagactgacttatg |
34293470 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 308 - 396
Target Start/End: Complemental strand, 36583170 - 36583082
Alignment:
| Q |
308 |
caccccaattcaaaccctcgatttacaagatgtagccggtcagggtggtggtgcgacgagtgacaccaatcctctgcaccacctctaaa |
396 |
Q |
| |
|
||||| ||| ||||||| | ||| ||||||||||| | || ||||||||||||||||||||||||||| ||||| ||||||||||||| |
|
|
| T |
36583170 |
caccctaatccaaacccccaattcacaagatgtagtcagttagggtggtggtgcgacgagtgacaccagtcctccacaccacctctaaa |
36583082 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 619 - 662
Target Start/End: Complemental strand, 36583067 - 36583024
Alignment:
| Q |
619 |
ttttggtggatcggtggagagaagagtctgacttatgatgatgt |
662 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
36583067 |
ttttggtggatcggtggagagaagagtctgatttatgatgatgt |
36583024 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 188; Significance: 1e-101; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 188; E-Value: 1e-101
Query Start/End: Original strand, 308 - 652
Target Start/End: Complemental strand, 47897228 - 47896880
Alignment:
| Q |
308 |
caccccaattcaaaccctcgatttacaagatgtagccggtcagggtggtggtgcgacgagtgacaccaatcctctgcaccacctctaaacgccatatatg |
407 |
Q |
| |
|
|||| |||| ||||||||| |||| |||||||||||||||||||||||||||||||||||||||| | ||||| ||||||||||||||||||| || || |
|
|
| T |
47897228 |
cacctcaatccaaaccctcaatttgcaagatgtagccggtcagggtggtggtgcgacgagtgacagcggtcctccgcaccacctctaaacgccagatctg |
47897129 |
T |
|
| Q |
408 |
tcggcgccagcgttaaggatgttgttctccgatgatcttgtgtattttggttgtttttgttcctcttcaaaacggcggcgacnnnnnnncgttttgaact |
507 |
Q |
| |
|
|||| ||||||||||||| ||||||||||||||| |||||||| |||||||||||||||||||||||| |||| |||| ||| ||||||||| | |
|
|
| T |
47897128 |
tcggtgccagcgttaaggttgttgttctccgatggtcttgtgtgttttggttgtttttgttcctcttcgaaacagcggagac-tttttccgttttgaatt |
47897030 |
T |
|
| Q |
508 |
gttgcgtg-----ttttttgttggtgtgttatggtggagtaggtcatggttttggcggtgataggacgtgaaggtggtgatgacatggtggttgtgcagt |
602 |
Q |
| |
|
|||||||| |||| |||||||||||| |||||||||||| || |||||||||| |||||| ||||||||||||||||||| |||||||| || ||| |
|
|
| T |
47897029 |
gttgcgtgttttattttctgttggtgtgttgtggtggagtagggcacggttttggcgatgatagaacgtgaaggtggtgatgacgtggtggttttgtagt |
47896930 |
T |
|
| Q |
603 |
ggtggcgacgatgttgttttggtggatcggtggagagaagagtctgactt |
652 |
Q |
| |
|
|||| |||||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
47896929 |
ggtgtcgacgatgctgttttggtggatcggtggagagaagagtctgactt |
47896880 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 168; E-Value: 1e-89
Query Start/End: Original strand, 308 - 652
Target Start/End: Original strand, 27786281 - 27786629
Alignment:
| Q |
308 |
caccccaattcaaaccctcgatttacaagatgtagccggtcagggtggtggtgcgacgagtgacaccaatcctctgcaccacctctaaacgccatatatg |
407 |
Q |
| |
|
|||| |||| ||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||| || || |
|
|
| T |
27786281 |
cacctcaatacaaaccctcaatttacaagatgtagtcggtcagggtggtggtgcgacgagtgacaccagtcctccgcaccacctctaaacgccagatctg |
27786380 |
T |
|
| Q |
408 |
tcggcgccagcgttaaggatgttgttctccgatgatcttgtgtattttggttgtttttgttcctcttcaaaacggcggcgacnnnnnnncgttttgaact |
507 |
Q |
| |
|
|||||||| |||||| || ||||||||||||||| |||||||| |||| |||||||||||||||||| ||||||| ||||| ||||||||||| |
|
|
| T |
27786381 |
tcggcgcctgcgttatggttgttgttctccgatggtcttgtgtggtttgattgtttttgttcctcttcgaaacggcagcgac-ttttttcgttttgaact |
27786479 |
T |
|
| Q |
508 |
gttgcgtg-----ttttttgttggtgtgttatggtggagtaggtcatggttttggcggtgataggacgtgaaggtggtgatgacatggtggttgtgcagt |
602 |
Q |
| |
|
||||||| ||||||||||||||||| ||||||||||||||| ||||| ||| | |||||| |||||||||||||| || ||||| || | |||| |
|
|
| T |
27786480 |
attgcgtgttctattttttgttggtgtgttgtggtggagtaggtcacagtttttgcgattataggaggtgaaggtggtgataacgtggtgattttacagt |
27786579 |
T |
|
| Q |
603 |
ggtggcgacgatgttgttttggtggatcggtggagagaagagtctgactt |
652 |
Q |
| |
|
||||||||||||| |||||||||||||| || |||||||||||| ||||| |
|
|
| T |
27786580 |
ggtggcgacgatgatgttttggtggatcagttgagagaagagtccgactt |
27786629 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 338 - 652
Target Start/End: Complemental strand, 8039738 - 8039422
Alignment:
| Q |
338 |
tgtagccggtcagggtggtggtgcgacgagtgacaccaatcctctgcaccacctctaaacgccatatatgtcggcgccagcgttaaggatgttgttctcc |
437 |
Q |
| |
|
||||||||||||||||||||||| ||| |||||||||| ||||| ||||||||||||||||| | ||||||||||||| |||||||| | |||||| | |
|
|
| T |
8039738 |
tgtagccggtcagggtggtggtgtgacaagtgacaccagtcctccgcaccacctctaaacgctagatatgtcggcgccgacgttaaggttactgttcttc |
8039639 |
T |
|
| Q |
438 |
gatgatcttgtgtat-tttggttgtttttgttcctcttcaaaacggcggcgacnnnnnnncgttttgaactgttgcgtgttt--tttgttggtgtgttat |
534 |
Q |
| |
|
|||| |||||||| | |||||||||||| |||||||||| |||||| || ||| | ||||||| |||| | ||||| ||| ||||| | | |
|
|
| T |
8039638 |
gatggtcttgtgtgtgtttggttgttttagttcctcttcgaaacggaggagac-ttttttcattttgaattgttccatgttttattttctggtggtgtgt |
8039540 |
T |
|
| Q |
535 |
ggtggagtaggtcatggttttggcggtgataggacgtgaaggtggtgatgacatggtggttgtgcagtggtggcgacgatgttgttttggtggatcggtg |
634 |
Q |
| |
|
||||||| || || |||||||||| |||||| | ||||||||||||||||| ||||||| |||| ||||| ||| |||| ||||||||||||||| || |
|
|
| T |
8039539 |
tgtggagtggggcaaggttttggcgatgatagaaggtgaaggtggtgatgacgcggtggttttgcaatggtgtcgaagatgatgttttggtggatcgatg |
8039440 |
T |
|
| Q |
635 |
gagagaagagtctgactt |
652 |
Q |
| |
|
||||||||||| |||||| |
|
|
| T |
8039439 |
gagagaagagtatgactt |
8039422 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 180; Significance: 7e-97; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 180; E-Value: 7e-97
Query Start/End: Original strand, 308 - 652
Target Start/End: Original strand, 46742467 - 46742815
Alignment:
| Q |
308 |
caccccaattcaaaccctcgatttacaagatgtagccggtcagggtggtggtgcgacgagtgacaccaatcctctgcaccacctctaaacgccatatatg |
407 |
Q |
| |
|
||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||| || || |
|
|
| T |
46742467 |
caccccaatccaaaccctcaatttacaagatgtagccggtcagggtggtggtgcgacgagtgacaccagtcctccgcaccacctctaaacgccagatttg |
46742566 |
T |
|
| Q |
408 |
tcggcgccagcgttaaggatgttgttctccgatgatcttgtgtattttggttgtttttgttcctcttcaaaacggcggcgacnnnnnnncgttttgaact |
507 |
Q |
| |
|
||| |||| ||||||||| || |||||||||||| |||||||| |||||||||||||||||||||||| ||||| || |||| ||||||||| | |
|
|
| T |
46742567 |
tcgacgccggcgttaaggttgctgttctccgatggtcttgtgtgttttggttgtttttgttcctcttcgaaacgacgacgac-ttttttcgttttgaatt |
46742665 |
T |
|
| Q |
508 |
gttgcgtg-----ttttttgttggtgtgttatggtggagtaggtcatggttttggcggtgataggacgtgaaggtggtgatgacatggtggttgtgcagt |
602 |
Q |
| |
|
|||||||| |||| |||||||||||| |||||||||||||||| |||||||||||||| | ||||||||||||||||| ||||| || | || | |
|
|
| T |
46742666 |
gttgcgtgttctattttctgttggtgtgttgtggtggagtaggtcatagttttggcggtgatgtaaggtgaaggtggtgatgacgtggtgattttacaat |
46742765 |
T |
|
| Q |
603 |
ggtggcgacgatgttgttttggtggatcggtggagagaagagtctgactt |
652 |
Q |
| |
|
||||||||||||| ||||||||||||| |||||||||||||||| ||||| |
|
|
| T |
46742766 |
ggtggcgacgatgctgttttggtggattggtggagagaagagtccgactt |
46742815 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 430 - 652
Target Start/End: Complemental strand, 11387883 - 11387658
Alignment:
| Q |
430 |
tgttctccgatgatcttgtgtattttggttgtttttgttcctcttcaaaacggcggcgacnnnnnnncgttttgaactgttgcgtgtttttt-----gtt |
524 |
Q |
| |
|
|||||||||||| |||||||| |||||||||||||||||||| ||| ||| ||| | ||| ||||| ||| ||||||||||||| | ||| |
|
|
| T |
11387883 |
tgttctccgatggtcttgtgtgttttggttgtttttgttcctattcgaaatggcagagacttttt--cgtttagaattgttgcgtgttttattttctgtt |
11387786 |
T |
|
| Q |
525 |
ggtgtgttatggtggagtaggtcatggttttggcggtgataggacgtgaaggtggtgatgacatggtggttgtgcagtggtggcgacgatgttgttttgg |
624 |
Q |
| |
|
||||||| |||||||||| | |||| ||||| || |||||| | ||||||||| ||||||| |||||||| |||||||||| |||| ||| |||||||| |
|
|
| T |
11387785 |
tgtgtgttgtggtggagtatggcatgattttgacgatgatagaaggtgaaggtgatgatgacgtggtggttttgcagtggtgtcgactatgctgttttgg |
11387686 |
T |
|
| Q |
625 |
tggatcggtggagagaagagtctgactt |
652 |
Q |
| |
|
|||||||||||||||||||||||||||| |
|
|
| T |
11387685 |
tggatcggtggagagaagagtctgactt |
11387658 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 66; E-Value: 8e-29
Query Start/End: Original strand, 308 - 401
Target Start/End: Complemental strand, 11387981 - 11387888
Alignment:
| Q |
308 |
caccccaattcaaaccctcgatttacaagatgtagccggtcagggtggtggtgcgacgagtgacaccaatcctctgcaccacctctaaacgcca |
401 |
Q |
| |
|
||||| ||| ||||||||| |||| ||||||||||||| ||||||||||||||||||||||||||||| ||||| ||||||||||||||||||| |
|
|
| T |
11387981 |
cacccaaatccaaaccctcaatttgcaagatgtagccgctcagggtggtggtgcgacgagtgacaccagtcctccgcaccacctctaaacgcca |
11387888 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 177; Significance: 5e-95; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 177; E-Value: 5e-95
Query Start/End: Original strand, 308 - 652
Target Start/End: Complemental strand, 38499758 - 38499409
Alignment:
| Q |
308 |
caccccaattcaaaccctcgatttacaagatgtagccggtcagggtggtggtgcgacgagtgacaccaatcctctgcaccacctctaaacgccatatatg |
407 |
Q |
| |
|
||||||||| ||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || || |
|
|
| T |
38499758 |
caccccaatccaaaccctcaatttgcaagatgtagccggtcagggtggtggtgcgacgagtgacaccaatcctctgcaccacctctaaacgccagatctg |
38499659 |
T |
|
| Q |
408 |
tcggcgccagcgttaaggatgttgttctccgatgatcttgtgtat-tttggttgtttttgttcctcttcaaaacggcggcgacnnnnnnncgttttgaac |
506 |
Q |
| |
|
|||||||| ||||||||| || |||||||||||| |||||||| | |||| || ||||||||||||||| ||||||||| ||| || |||||| |
|
|
| T |
38499658 |
tcggcgccggcgttaaggttgctgttctccgatggtcttgtgtgtgtttgattttttttgttcctcttcgaaacggcggagac-ttttttcgatttgaaa |
38499560 |
T |
|
| Q |
507 |
tgttgcgtg-----ttttttgttggtgtgttatggtggagtaggtcatggttttggcggtgataggacgtgaaggtggtgatgacatggtggttgtgcag |
601 |
Q |
| |
|
||||||||| ||||||||||||||||| | |||||||||| || |||||||||| |||||| | ||||||| || |||||| |||||||| || || |
|
|
| T |
38499559 |
tgttgcgtgttttattttttgttggtgtgttgtagtggagtagggcacggttttggcgatgatagaaggtgaaggcggcgatgacgtggtggttttgtag |
38499460 |
T |
|
| Q |
602 |
tggtggcgacgatgttgttttggtggatcggtggagagaagagtctgactt |
652 |
Q |
| |
|
|| || ||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38499459 |
tgctgtcgacgatgttgttttggtggatcggtggagagaagagtctgactt |
38499409 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 147; E-Value: 4e-77
Query Start/End: Original strand, 312 - 652
Target Start/End: Complemental strand, 10182615 - 10182276
Alignment:
| Q |
312 |
ccaattcaaaccctcgatttacaagatgtagccggtcagggtggtggtgcgacgagtgacaccaatcctctgcaccacctctaaacgccatatatgtcgg |
411 |
Q |
| |
|
||||| ||| ||||| ||||| ||||||||| |||| ||||||||||||||||||||||||||| || ||||||||||||||||| |||| || |||| | |
|
|
| T |
10182615 |
ccaatccaacccctcaatttataagatgtagtcggtaagggtggtggtgcgacgagtgacaccagtcttctgcaccacctctaaatgccagatctgtcag |
10182516 |
T |
|
| Q |
412 |
cgccagcgttaaggatgttgttctccgatgatcttgtgtattttggttgtttttgttcctcttcaaaacggcggcgacnnnnnnncgttttgaactgttg |
511 |
Q |
| |
|
|| | ||||||||| ||||||||||||| ||| |||| ||||||||||||||||||| |||| ||||| |||||| | |||| || ||||| |
|
|
| T |
10182515 |
cgtcggcgttaagg---ttgttctccgatggtctcgtgtgttttggttgtttttgttccacttcgaaacgacggcga--tttttccattttaaattgttg |
10182421 |
T |
|
| Q |
512 |
cgtgtt-----ttttgttggtgtgttatggtggagtaggtcatggttttggcggtgataggacgtgaaggtggtgatgacatggtggttgtgcagtggtg |
606 |
Q |
| |
|
||||| || |||||||||||| ||||||||||||||| ||||||||||||||||||| ||||||||||||||||| |||||||| |||||||||| |
|
|
| T |
10182420 |
tgtgttctattttctgttggtgtgttgtggtggagtaggtcacggttttggcggtgataggaggtgaaggtggtgatgacgtggtggttttgcagtggtg |
10182321 |
T |
|
| Q |
607 |
gcgacgatgttgttttggtggatcggtggagagaagagtctgactt |
652 |
Q |
| |
|
||||||||| | |||||||||||||||||||||||||||| ||||| |
|
|
| T |
10182320 |
gcgacgatgct-ttttggtggatcggtggagagaagagtccgactt |
10182276 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0725 (Bit Score: 159; Significance: 3e-84; HSPs: 1)
Name: scaffold0725
Description:
Target: scaffold0725; HSP #1
Raw Score: 159; E-Value: 3e-84
Query Start/End: Original strand, 308 - 655
Target Start/End: Complemental strand, 1646 - 1295
Alignment:
| Q |
308 |
caccccaattcaaaccctcgatttacaagatgtagccggtcagggtggtggtgcgacgagtgacaccaatcctctgcaccacctctaaacgccatatatg |
407 |
Q |
| |
|
||||||||| ||||||||| ||| |||||||||||||||| |||||||||||||||| |||||||||| ||||||||||||||||||||||||| || || |
|
|
| T |
1646 |
caccccaatccaaaccctcaattcacaagatgtagccggttagggtggtggtgcgactagtgacaccagtcctctgcaccacctctaaacgccagatctg |
1547 |
T |
|
| Q |
408 |
tcggcgccagcgttaaggatgttgttctccgatgatcttgtgtattttggttgtttttgttcctcttcaaaacggcggcgacnnnnnnncgttttgaact |
507 |
Q |
| |
|
|||| |||| |||||||| ||||||||||||||| |||||||| ||||||||||||||||||||||| ||||| || |||| ||||| || || |
|
|
| T |
1546 |
tcggggccaacgttaaggttgttgttctccgatggtcttgtgtggtttggttgtttttgttcctcttcgaaacgacgacgac-ttttttcgtttcgacct |
1448 |
T |
|
| Q |
508 |
gttgcgtg-----ttttttgttggtgtgttatggtggagtaggtcatggttttggcggtgataggacgtgaaggtggtgatgacatggtggttgtgcagt |
602 |
Q |
| |
|
|||||||| |||| | |||||||||| ||||||| |||| || | |||||||| |||||| | |||||| ||||||||| |||||||| |||||| |
|
|
| T |
1447 |
gttgcgtgttttattttctattggtgtgttgtggtggattagggcacgattttggcgttgatagaaggtgaagagggtgatgacgtggtggttttgcagt |
1348 |
T |
|
| Q |
603 |
ggtggcgacgatgttgttttggtggatcggtggagagaagagtctgacttatg |
655 |
Q |
| |
|
|||| ||| |||| ||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
1347 |
ggtgtcgatgatgctgttttggtggatcggtggagagaagaatctgacttatg |
1295 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0088 (Bit Score: 156; Significance: 2e-82; HSPs: 1)
Name: scaffold0088
Description:
Target: scaffold0088; HSP #1
Raw Score: 156; E-Value: 2e-82
Query Start/End: Original strand, 308 - 655
Target Start/End: Complemental strand, 27562 - 27211
Alignment:
| Q |
308 |
caccccaattcaaaccctcgatttacaagatgtagccggtcagggtggtggtgcgacgagtgacaccaatcctctgcaccacctctaaacgccatatatg |
407 |
Q |
| |
|
||||||||| ||||||||| ||| |||||||||||||||| |||||||||||||||| | |||||||| ||||||||||||||||||||||||| || || |
|
|
| T |
27562 |
caccccaatccaaaccctcaattcacaagatgtagccggttagggtggtggtgcgactaatgacaccagtcctctgcaccacctctaaacgccagatctg |
27463 |
T |
|
| Q |
408 |
tcggcgccagcgttaaggatgttgttctccgatgatcttgtgtattttggttgtttttgttcctcttcaaaacggcggcgacnnnnnnncgttttgaact |
507 |
Q |
| |
|
|||| |||| | |||||| ||||||||||||||| |||||||| |||||||||||||||||||||||| |||||||| |||| |||| || || |
|
|
| T |
27462 |
tcggtgccaacattaaggttgttgttctccgatggtcttgtgtgttttggttgtttttgttcctcttcgaaacggcgacgacttttttg-gtttcgacct |
27364 |
T |
|
| Q |
508 |
gttgcgtg-----ttttttgttggtgtgttatggtggagtaggtcatggttttggcggtgataggacgtgaaggtggtgatgacatggtggttgtgcagt |
602 |
Q |
| |
|
|||||||| |||| | |||||||| | |||||||||||| || | |||||||| |||||| | |||||| ||||||||| ||||| || |||||| |
|
|
| T |
27363 |
gttgcgtgttttattttctattggtgtgctgtggtggagtagggcacgattttggcgttgatagaaggtgaagagggtgatgacgtggtgattttgcagt |
27264 |
T |
|
| Q |
603 |
ggtggcgacgatgttgttttggtggatcggtggagagaagagtctgacttatg |
655 |
Q |
| |
|
|||| |||||||| ||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
27263 |
ggtgtcgacgatgctgttttggtggatcggtggagagaagaatctgacttatg |
27211 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 152; Significance: 4e-80; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 152; E-Value: 4e-80
Query Start/End: Original strand, 308 - 652
Target Start/End: Complemental strand, 1533833 - 1533485
Alignment:
| Q |
308 |
caccccaattcaaaccctcgatttacaagatgtagccggtcagggtggtggtgcgacgagtgacaccaatcctctgcaccacctctaaacgccatatatg |
407 |
Q |
| |
|
||||||||| |||||||| ||||||||||||||||||||||||||| |||||||| ||||||||||| ||||| || |||||||||||| || || || |
|
|
| T |
1533833 |
caccccaatcgaaaccctcaatttacaagatgtagccggtcagggtgatggtgcgatgagtgacaccagtcctccgcgccacctctaaacatcagatttg |
1533734 |
T |
|
| Q |
408 |
tcggcgccagcgttaaggatgttgttctccgatgatcttgtgtattttggttgtttttgttcctcttcaaaacggcggcgacnnnnnnncgttttgaact |
507 |
Q |
| |
|
||| || | ||||||||| || ||||||||||| |||| ||| |||||||||||||||||||||||| |||| || |||| ||||||||| | |
|
|
| T |
1533733 |
tcgacgtcggcgttaaggttgctgttctccgatagtcttatgtgttttggttgtttttgttcctcttcgaaacaacgacgactttttt-cgttttgaatt |
1533635 |
T |
|
| Q |
508 |
gttgcgtgtt-----ttttgttggtgtgttatggtggagtaggtcatggttttggcggtgataggacgtgaaggtggtgatgacatggtggttgtgcagt |
602 |
Q |
| |
|
|||||||||| || |||||||||||| |||||||||||||||| |||||||||||||| | ||||||||||||||||| |||||||| | |||| |
|
|
| T |
1533634 |
gttgcgtgttctattttctgttggtgtgttgtggtggagtaggtcatagttttggcggtgatgtaaggtgaaggtggtgatgacgtggtggttttacagt |
1533535 |
T |
|
| Q |
603 |
ggtggcgacgatgttgttttggtggatcggtggagagaagagtctgactt |
652 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||||||||||| ||||| |
|
|
| T |
1533534 |
ggtggcgacgatgctgttttggtggatcggtggagagaagagtccgactt |
1533485 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 148; Significance: 9e-78; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 148; E-Value: 9e-78
Query Start/End: Original strand, 308 - 655
Target Start/End: Complemental strand, 9567348 - 9566996
Alignment:
| Q |
308 |
caccccaattcaaaccctcgatttacaagatgtagccggtcagggtggtggtgcgacgagtgacaccaatcctctgcaccacctctaaacgccatatatg |
407 |
Q |
| |
|
||||||||| ||||||||| ||| ||||||||||||| || |||||||| ||||||||||||||||| ||||| ||||||||||||||||||| || | |
|
|
| T |
9567348 |
caccccaatccaaaccctcaattcacaagatgtagcctgttcgggtggtgttgcgacgagtgacaccagtcctccgcaccacctctaaacgccaaatcta |
9567249 |
T |
|
| Q |
408 |
tcggcgccagcgttaaggatgttgttctccgatgatcttgtgtattttggttgtttttgttcctcttcaaaacggcggcgacnnnnnnncgttttgaact |
507 |
Q |
| |
|
|| |||||||||||||| ||||||||||||||| |||||||| ||||||||| |||||||||||||| |||||||| |||| |||||||| || |
|
|
| T |
9567248 |
tcaacgccagcgttaaggttgttgttctccgatggtcttgtgtgttttggttgcttttgttcctcttcgaaacggcgacgac-ttttttcgttttgacct |
9567150 |
T |
|
| Q |
508 |
gttgcgtg-----ttttttgttggtgtgttatggtggagtaggtcatggttttggcggtgataggacgtg-aaggtggtgatgacatggtggttgtgcag |
601 |
Q |
| |
|
|||||||| |||| | |||||||||| |||||||||||| || | |||||||| |||||| | ||| |||||||||| ||| |||||||| ||||| |
|
|
| T |
9567149 |
gttgcgtgttttattttatattggtgtgttgtggtggagtagggcacgattttggcgttgatagaaggtgaaaggtggtgacgacgtggtggttttgcag |
9567050 |
T |
|
| Q |
602 |
tggtggcgacgatgttgttttggtggatcggtggagagaagagtctgacttatg |
655 |
Q |
| |
|
||||| |||||||| |||||||||| |||| ||||||||||||||| ||||||| |
|
|
| T |
9567049 |
tggtgtcgacgatgctgttttggtgaatcgatggagagaagagtctaacttatg |
9566996 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 588 - 652
Target Start/End: Complemental strand, 11366984 - 11366920
Alignment:
| Q |
588 |
tggtggttgtgcagtggtggcgacgatgttgttttggtggatcggtggagagaagagtctgactt |
652 |
Q |
| |
|
|||||||| |||||||||| | |||||| |||||||||||||| |||||||||| |||||||||| |
|
|
| T |
11366984 |
tggtggttttgcagtggtgtcaacgatgctgttttggtggatcagtggagagaaaagtctgactt |
11366920 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 516 - 581
Target Start/End: Complemental strand, 11367044 - 11366980
Alignment:
| Q |
516 |
ttttttgttggtgtgttatggtggagtaggtcatggttttggcggtgataggacgtgaaggtggtg |
581 |
Q |
| |
|
|||||||||||| |||| |||||||| ||| || |||||||||| |||||| | |||||||||||| |
|
|
| T |
11367044 |
ttttttgttggt-tgttgtggtggaggagggcacggttttggcgatgatagaaggtgaaggtggtg |
11366980 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0005 (Bit Score: 84; Significance: 1e-39; HSPs: 1)
Name: scaffold0005
Description:
Target: scaffold0005; HSP #1
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 521 - 652
Target Start/End: Complemental strand, 270678 - 270547
Alignment:
| Q |
521 |
tgttggtgtgttatggtggagtaggtcatggttttggcggtgataggacgtgaaggtggtgatgacatggtggttgtgcagtggtggcgacgatgttgtt |
620 |
Q |
| |
|
|||||| ||||| |||||||||||| || |||||||||| |||||| | ||||||||||||||||| |||||||| |||||||||| ||||||| |||| |
|
|
| T |
270678 |
tgttggcgtgttgtggtggagtagggcacggttttggcgatgatagaaggtgaaggtggtgatgacgtggtggttttgcagtggtgtcgacgatactgtt |
270579 |
T |
|
| Q |
621 |
ttggtggatcggtggagagaagagtctgactt |
652 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |
|
|
| T |
270578 |
ttggtggatcggtggagagaagagtctgactt |
270547 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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