View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4970_low_41 (Length: 269)

Name: NF4970_low_41
Description: NF4970
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4970_low_41
NF4970_low_41
[»] chr3 (7 HSPs)
chr3 (20-268)||(25084882-25085130)
chr3 (20-269)||(24497349-24497599)
chr3 (24-254)||(24919980-24920210)
chr3 (24-256)||(24923554-24923787)
chr3 (20-236)||(24981922-24982138)
chr3 (24-236)||(31825651-31825863)
chr3 (24-254)||(21584691-21584921)
[»] chr7 (4 HSPs)
chr7 (36-254)||(10575245-10575463)
chr7 (72-235)||(39954987-39955150)
chr7 (44-199)||(354317-354473)
chr7 (44-198)||(10580701-10580855)
[»] chr8 (1 HSPs)
chr8 (36-236)||(14261138-14261338)
[»] chr2 (1 HSPs)
chr2 (24-232)||(41027452-41027660)
[»] chr4 (3 HSPs)
chr4 (69-172)||(53328654-53328757)
chr4 (75-232)||(22898433-22898590)
chr4 (75-232)||(22950101-22950258)
[»] chr5 (1 HSPs)
chr5 (69-233)||(26358687-26358851)


Alignment Details
Target: chr3 (Bit Score: 213; Significance: 1e-117; HSPs: 7)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 20 - 268
Target Start/End: Complemental strand, 25085130 - 25084882
Alignment:
Q  20 aactgcatcacgaatgacattttccaagaagatcttcaagacacctctggtttcttcatagatcaaaccactgattctcttcacaccacctcttcttgcc 119  Q
    |||||||||||| || ||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||    
T  25085130 aactgcatcacggatcacattctccaagaagatcttcaagacacctctggtttcttcatatatcaaaccactgattctcttcacaccacctcttctcgcc 25085031  T
Q  120 aatcgacgaatggcaggcttggtgataccctggatgttatcacgaagaaccttcctatgcctctttgcacctccctttcccagtcccttacctccctttc 219  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||    
T  25085030 aatctacgaatggcaggcttggtgataccctggatgttatcacgaagaacctttctatgcctctttgcacctccctttcccaatcccttacctccctttc 25084931  T
Q  220 cacgacctgacattttcgcgagaaaatttgagaaaacaaaaagaaaatt 268  Q
    ||||||||||||||||||||||||||||||||||||| |||||||||||    
T  25084930 cacgacctgacattttcgcgagaaaatttgagaaaacgaaaagaaaatt 25084882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 20 - 269
Target Start/End: Original strand, 24497349 - 24497599
Alignment:
Q  20 aactgcatcacgaatgacattttccaagaagatcttcaagacacctctggtttcttcatagatcaaaccactgattctcttcacaccacctcttcttgcc 119  Q
    |||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||    
T  24497349 aactgcatcacggatcacattttccaagaagatcttcaagacacctctggtttcttcatagatcaatccactgattctcttaacaccacctcttcttgcc 24497448  T
Q  120 aatcgacgaatggcaggcttggtgataccctggatgttatcacgaagaaccttcctatgcctctttgcacctccctttcccagtcccttacctccctttc 219  Q
    ||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  24497449 aatcgacgaatagcaggcttggtgataccctggatgttgtcacgaagaaccttcctatgcctctttgcacctccctttccgagtcccttacctccctttc 24497548  T
Q  220 cacgacctgacattttcgcgagaaaatttgagaaaac-aaaaagaaaattt 269  Q
    |||| ||||||||||||  |||||||||||||||||| ||| |||||||||    
T  24497549 cacgccctgacattttcaagagaaaatttgagaaaacgaaatagaaaattt 24497599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 24 - 254
Target Start/End: Original strand, 24919980 - 24920210
Alignment:
Q  24 gcatcacgaatgacattttccaagaagatcttcaagacacctctggtttcttcatagatcaaaccactgattctcttcacaccacctcttcttgccaatc 123  Q
    ||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  24919980 gcatcacgaatgacattctctaagaagatcttcaagacacctctggtttcttcatagatcaaaccgctgattctcttcacaccacctcttcttgccaatc 24920079  T
Q  124 gacgaatggcaggcttggtgataccctggatgttatcacgaagaaccttcctatgcctctttgcacctccctttcccagtcccttacctccctttccacg 223  Q
    ||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  24920080 gacgaattgcaggcttggtgataccctggatgttatcacgaagaactttcctatgcctctttgcacctccctttcccaatcccttacctccctttccacg 24920179  T
Q  224 acctgacattttcgcgagaaaatttgagaaa 254  Q
     || |||||||||||||||||||||||||||    
T  24920180 gccagacattttcgcgagaaaatttgagaaa 24920210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 24 - 256
Target Start/End: Original strand, 24923554 - 24923787
Alignment:
Q  24 gcatcacgaatgacattttccaagaagatcttcaagacacctctggtttcttcatagatcaaaccactgattctcttcacaccacctcttcttgccaatc 123  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  24923554 gcatcacgaatgacattctccaagaagatcttcaagacacctctggtttcttcatagatcaaaccactgattctcttaacaccacctcttcttgccaatc 24923653  T
Q  124 gacgaatggcaggcttggtgataccctggatgttatcacgaagaaccttcctatgcctctttgcacctccctttcccagtcccttacctccctttccacg 223  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||| |||||    
T  24923654 gacgaatagcaggcttggtgataccctggatgttatcacgaagaacctttctatgcctctttgcacctccctttccgagtcccttacctcccttaccacg 24923753  T
Q  224 acctgacattttcgcgagaaaa-tttgagaaaac 256  Q
    |||||||||||||  ||||||| |||||||||||    
T  24923754 acctgacattttcaagagaaaactttgagaaaac 24923787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 181; E-Value: 7e-98
Query Start/End: Original strand, 20 - 236
Target Start/End: Complemental strand, 24982138 - 24981922
Alignment:
Q  20 aactgcatcacgaatgacattttccaagaagatcttcaagacacctctggtttcttcatagatcaaaccactgattctcttcacaccacctcttcttgcc 119  Q
    |||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||    
T  24982138 aactgcatcacggatgacattctccaagaagatcttcaagacacctctggtttcttcatatatcaaaccactgattctcttaacaccacctcttcttgcc 24982039  T
Q  120 aatcgacgaatggcaggcttggtgataccctggatgttatcacgaagaaccttcctatgcctctttgcacctccctttcccagtcccttacctccctttc 219  Q
    ||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||| ||||    
T  24982038 aatcgacgaatagcaggcttggtgataccctggatgttatcacgaagaactttcctatgcctctttgcacctccctttcctagtcccttacctccttttc 24981939  T
Q  220 cacgacctgacattttc 236  Q
    |||| ||||||||||||    
T  24981938 cacgccctgacattttc 24981922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 149; E-Value: 9e-79
Query Start/End: Original strand, 24 - 236
Target Start/End: Original strand, 31825651 - 31825863
Alignment:
Q  24 gcatcacgaatgacattttccaagaagatcttcaagacacctctggtttcttcatagatcaaaccactgattctcttcacaccacctcttcttgccaatc 123  Q
    |||||||| |||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||| |||||||    
T  31825651 gcatcacggatgacattctccaagaagatcttcaagacacctctagtttcttcatagatcaaaccactgatcctcttcacaccacctcttctcgccaatc 31825750  T
Q  124 gacgaatggcaggcttggtgataccctggatgttatcacgaagaaccttcctatgcctctttgcacctccctttcccagtcccttacctccctttccacg 223  Q
    |||||||||||||||| ||||||||||||||||| || || ||||| || || ||||| ||||||||||||||||| || |||||||||||||| |||||    
T  31825751 gacgaatggcaggcttagtgataccctggatgttgtcgcggagaacttttctgtgcctttttgcacctccctttcctagccccttacctcccttaccacg 31825850  T
Q  224 acctgacattttc 236  Q
    |||||||||||||    
T  31825851 acctgacattttc 31825863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 143; E-Value: 3e-75
Query Start/End: Original strand, 24 - 254
Target Start/End: Original strand, 21584691 - 21584921
Alignment:
Q  24 gcatcacgaatgacattttccaagaagatcttcaagacacctctggtttcttcatagatcaaaccactgattctcttcacaccacctcttcttgccaatc 123  Q
    ||||||||||| ||||| |||||||| ||||| |  || ||||| ||||| ||||| |||||||||||||||||||| |||||||||||||| |||||||    
T  21584691 gcatcacgaatcacattctccaagaaaatcttaagaactcctcttgtttcctcataaatcaaaccactgattctcttaacaccacctcttctcgccaatc 21584790  T
Q  124 gacgaatggcaggcttggtgataccctggatgttatcacgaagaaccttcctatgcctctttgcacctccctttcccagtcccttacctccctttccacg 223  Q
    ||||||| || ||||||||||| ||||| ||||||||||||||||| ||||| || |||||||||||||||||||| |||||||||||||||||||||||    
T  21584791 gacgaatcgctggcttggtgattccctgaatgttatcacgaagaactttcctgtgtctctttgcacctccctttcctagtcccttacctccctttccacg 21584890  T
Q  224 acctgacattttcgcgagaaaatttgagaaa 254  Q
    |||||||||||||  ||||||||||||||||    
T  21584891 acctgacattttcaagagaaaatttgagaaa 21584921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 111; Significance: 4e-56; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 111; E-Value: 4e-56
Query Start/End: Original strand, 36 - 254
Target Start/End: Complemental strand, 10575463 - 10575245
Alignment:
Q  36 acattttccaagaagatcttcaagacacctctggtttcttcatagatcaaaccactgattctcttcacaccacctcttcttgccaatcgacgaatggcag 135  Q
    ||||| ||||||||||||||||| |||||||| ||||| ||||||||||| ||||||||||| |||||||| |||||||| |||||||||||||| || |    
T  10575463 acattctccaagaagatcttcaacacacctcttgtttcctcatagatcaatccactgattcttttcacacctcctcttctcgccaatcgacgaatcgctg 10575364  T
Q  136 gcttggtgataccctggatgttatcacgaagaaccttcctatgcctctttgcacctccctttcccagtcccttacctccctttccacgacctgacatttt 235  Q
    |||| ||||| || |||||||| ||||| |||||||| | ||| ||||||||||| |||||||| | ||| |||||||||||||||||||| ||||||||    
T  10575363 gctttgtgattccttggatgttgtcacggagaaccttgcgatgtctctttgcacccccctttcctaatcctttacctccctttccacgaccagacatttt 10575264  T
Q  236 cgcgagaaaatttgagaaa 254  Q
     |   ||||||||||||||    
T  10575263 tgaatgaaaatttgagaaa 10575245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 72 - 235
Target Start/End: Original strand, 39954987 - 39955150
Alignment:
Q  72 tcttcatagatcaaaccactgattctcttcacaccacctcttcttgccaatcgacgaatggcaggcttggtgataccctggatgttatcacgaagaacct 171  Q
    ||||| ||||| | ||| |||||||||||||||||||| |  ||||| |  |||||||| ||||||||||| || || |||||||| || ||||||||||    
T  39954987 tcttcgtagatgagaccgctgattctcttcacaccaccacgccttgcaagacgacgaatcgcaggcttggttatgccttggatgttgtcgcgaagaacct 39955086  T
Q  172 tcctatgcctctttgcacctccctttcccagtcccttacctccctttccacgacctgacatttt 235  Q
    | || ||||||||||| ||||||||||||| |||||| ||||| ||||||||||||||||||||    
T  39955087 ttctgtgcctctttgctcctccctttcccaatccctttcctccttttccacgacctgacatttt 39955150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 44 - 199
Target Start/End: Complemental strand, 354473 - 354317
Alignment:
Q  44 caagaagatcttcaagacacctctggtttcttcatagatcaaa-ccactgattctcttcacaccacctcttcttgccaatcgacgaatggcaggcttggt 142  Q
    |||||| |||||||| || |||||  |||| |||||||| ||| |||||||| |||||||||||||||||||| ||||||| |||||| || ||||| ||    
T  354473 caagaaaatcttcaacactcctcttatttcctcatagattaaaaccactgatcctcttcacaccacctcttctcgccaatctacgaatcgctggctttgt 354374  T
Q  143 gataccctggatgttatcacgaagaaccttcctatgcctctttgcacctccctttcc 199  Q
     || || || |||||| | | ||||||||| ||||| | ||||||||||||||||||    
T  354373 tattccttgaatgttaccgcaaagaaccttgctatgtcactttgcacctccctttcc 354317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 44 - 198
Target Start/End: Complemental strand, 10580855 - 10580701
Alignment:
Q  44 caagaagatcttcaagacacctctggtttcttcatagatcaaaccactgattctcttcacaccacctcttcttgccaatcgacgaatggcaggcttggtg 143  Q
    |||||| |||||||| |  |||||  |||| |||||||||||||||||||| |||||||||||| ||||||| ||||||| |||||| || ||||| ||     
T  10580855 caagaaaatcttcaacagtcctcttatttcctcatagatcaaaccactgatcctcttcacaccaactcttctcgccaatctacgaatcgctggctttgtt 10580756  T
Q  144 ataccctggatgttatcacgaagaaccttcctatgcctctttgcacctccctttc 198  Q
    || || || |||||| | | ||||||||| | ||  | |||||||||||||||||    
T  10580755 attccttgaatgttaccgcaaagaaccttgcaatatcactttgcacctccctttc 10580701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 97; Significance: 1e-47; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 36 - 236
Target Start/End: Original strand, 14261138 - 14261338
Alignment:
Q  36 acattttccaagaagatcttcaagacacctctggtttcttcatagatcaaaccactgattctcttcacaccacctcttcttgccaatcgacgaatggcag 135  Q
    ||||| |||||||| |||||||| ||||| |  ||||||||||| ||||| || ||||||||||||||||| |||||||| || ||||| ||||| || |    
T  14261138 acattctccaagaaaatcttcaacacaccgcgagtttcttcataaatcaacccgctgattctcttcacacctcctcttctcgctaatcgccgaatcgctg 14261237  T
Q  136 gcttggtgataccctggatgttatcacgaagaaccttcctatgcctctttgcacctccctttcccagtcccttacctccctttccacgacctgacatttt 235  Q
    |||| ||||| || |||||||| |||||||| || || | ||| |||||||||||||||||||| | |||||||||||||||||||||||||||||||||    
T  14261238 gctttgtgattccttggatgttgtcacgaagcactttgcgatgtctctttgcacctccctttcctaatcccttacctccctttccacgacctgacatttt 14261337  T
Q  236 c 236  Q
    |    
T  14261338 c 14261338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 53; Significance: 2e-21; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 24 - 232
Target Start/End: Complemental strand, 41027660 - 41027452
Alignment:
Q  24 gcatcacgaatgacattttccaagaagatcttcaagacacctctggtttcttcatagatcaaaccactgattctcttcacaccacctcttcttgccaatc 123  Q
    ||||||||||| ||||| ||||| ||||||||||| || || |  || ||||| ||||||||||| || || | |||||| || ||||| | |||||| |    
T  41027660 gcatcacgaataacattctccaaaaagatcttcaacacgccacgtgtctcttcgtagatcaaaccgcttatacgcttcactcctcctctacgtgccaaac 41027561  T
Q  124 gacgaatggcaggcttggtgataccctggatgttatcacgaagaaccttcctatgcctctttgcacctccctttcccagtcccttacctccctttccacg 223  Q
    ||||||| |||||||| || || || || |||||||||||||| ||||| |  || |  ||||| ||||||||||||| |||||| || || ||||||||    
T  41027560 gacgaatcgcaggcttcgtaattccttgaatgttatcacgaagcaccttacggtgtcgttttgctcctccctttcccaatccctttccaccttttccacg 41027461  T
Q  224 acctgacat 232  Q
     || |||||    
T  41027460 tccagacat 41027452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 48; Significance: 2e-18; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 69 - 172
Target Start/End: Complemental strand, 53328757 - 53328654
Alignment:
Q  69 gtttcttcatagatcaaaccactgattctcttcacaccacctcttcttgccaatcgacgaatggcaggcttggtgataccctggatgttatcacgaagaa 168  Q
    |||||||||||||| || |||||||| | |||||||||||| | |||||| |  |||||||| |||||||| ||||| |||||||||||||| || ||||    
T  53328757 gtttcttcatagattaagccactgatacgcttcacaccaccacgtcttgcgagacgacgaatcgcaggctttgtgattccctggatgttatcgcgcagaa 53328658  T
Q  169 cctt 172  Q
    ||||    
T  53328657 cctt 53328654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 75 - 232
Target Start/End: Complemental strand, 22898590 - 22898433
Alignment:
Q  75 tcatagatcaaaccactgattctcttcacaccacctcttcttgccaatcgacgaatggcaggcttggtgataccctggatgttatcacgaagaaccttcc 174  Q
    ||||| |||||||||||||| | |||||| || ||||| |  || |  |||||||| || ||||| || || ||||||||||| |||||||| ||||| |    
T  22898590 tcataaatcaaaccactgatacgcttcactcctcctctacgagcaagacgacgaatcgctggctttgttattccctggatgttgtcacgaagcaccttac 22898491  T
Q  175 tatgcctctttgcacctccctttcccagtcccttacctccctttccacgacctgacat 232  Q
     ||| | |||||| || ||||||||||  ||||| || || |||||||| || |||||    
T  22898490 gatgtcgctttgctccaccctttcccaaaccctttccaccttttccacgcccagacat 22898433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 75 - 232
Target Start/End: Complemental strand, 22950258 - 22950101
Alignment:
Q  75 tcatagatcaaaccactgattctcttcacaccacctcttcttgccaatcgacgaatggcaggcttggtgataccctggatgttatcacgaagaaccttcc 174  Q
    ||||| |||||||||||||| | |||||| || ||||| |  || |  |||||||| || ||||| || || ||||||||||| |||||||| ||||| |    
T  22950258 tcataaatcaaaccactgatacgcttcactcctcctctacgagcaagacgacgaatcgctggctttgttattccctggatgttgtcacgaagcaccttac 22950159  T
Q  175 tatgcctctttgcacctccctttcccagtcccttacctccctttccacgacctgacat 232  Q
     ||| | |||||| || ||||||||||  ||||| || || |||||||| || |||||    
T  22950158 gatgtcgctttgctccaccctttcccaaaccctttccaccttttccacgcccagacat 22950101  T

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Target: chr5 (Bit Score: 37; Significance: 0.000000000006; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 69 - 233
Target Start/End: Original strand, 26358687 - 26358851
Alignment:
Q  69 gtttcttcatagatcaaaccactgattctcttcacaccacctcttcttgccaatcgacgaatggcaggcttggtgataccctggatgttatcacgaagaa 168  Q
    |||||||||||||||| ||||||||| |  || |||||||| |  ||||| |  |||||||| || || ||||| || ||||| |||||||| |||||||    
T  26358687 gtttcttcatagatcagaccactgatacgttttacaccaccacgccttgcaagacgacgaatcgcgggtttggtaattccctgaatgttatctcgaagaa 26358786  T
Q  169 ccttcctatgcctctttgcacctccctttcccagtcccttacctccctttccacgacctgacatt 233  Q
    | || | ||| | ||||||||| |||||||| |  ||||| ||||| ||||| |  |||||||||    
T  26358787 ctttgcgatgacgctttgcaccaccctttcctaaaccctttcctccttttcctcttcctgacatt 26358851  T

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