View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4970_low_42 (Length: 264)
Name: NF4970_low_42
Description: NF4970
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4970_low_42 |
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| [»] chr8 (4 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 223; Significance: 1e-123; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 223; E-Value: 1e-123
Query Start/End: Original strand, 1 - 264
Target Start/End: Complemental strand, 15802413 - 15802150
Alignment:
| Q |
1 |
aaatacagaaattgttatgtccaacaaaattcttggaatggttactgnnnnnnnttcaaccatgaaaacgtcaaaacacaacatgacttgtactaaaagg |
100 |
Q |
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| T |
15802413 |
aaatacagaaattgttatgtccaataaaattcttggaatggttaatgaaaaaaattcaaccatgaaaatgtcaaaacacaacatgacttgtactacaagg |
15802314 |
T |
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| Q |
101 |
tttctaagcttcattttccttcatttcttcctcttcatgatcctaacaactgcacaatcaccattttacttgtacagtatttgccagaattcaacagaaa |
200 |
Q |
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| T |
15802313 |
tttctaagcttcattttccttcatttcttcctcttcatgatcctaacaactgcacaatcaccattttacttgtacagtatttgcgagaattcaacagaaa |
15802214 |
T |
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| Q |
201 |
aaacacttaacacttcataccaatccaacgttaatagccttctctcatggataaactcagattc |
264 |
Q |
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| T |
15802213 |
aaacacttaacacttcataccaatccaacgttaatagccttctctcatggataaactcagattc |
15802150 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 56 - 251
Target Start/End: Complemental strand, 15794559 - 15794364
Alignment:
| Q |
56 |
tcaaccatgaaaacgtcaaaacacaacatgacttgtactaaaaggtttctaagcttcattttccttcatttcttcctcttcatgatcctaacaactgcac |
155 |
Q |
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| T |
15794559 |
tcaacaatgaaaacgtcaccacacaacatgacttatactacaaggtttctaagcttcattctccttaatctcctcctcttcatgatcctaacaactgcac |
15794460 |
T |
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| Q |
156 |
aatcaccattttacttgtacagtatttgccagaattcaacagaaaaaacacttaacacttcataccaatccaacgttaatagccttctctcatgga |
251 |
Q |
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| T |
15794459 |
aatcaccattttatatgtatagtgtttgcgagaattcaactcaaaaaatactcaacgcttcgtaccaatccaacgttaacaactttctgtcatgga |
15794364 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 75 - 234
Target Start/End: Complemental strand, 15807958 - 15807799
Alignment:
| Q |
75 |
aacacaacatgacttgtactaaaaggtttctaagcttcattttccttcatttcttcctcttcatgatcctaacaactgcacaatcaccattttacttgta |
174 |
Q |
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| T |
15807958 |
aacacaacatgacttgtactacaaggtttctaagcttcattctacttcatcacttcctcttcatgacgctaacgaatgcgcaatcaccattttacatgta |
15807859 |
T |
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| Q |
175 |
cagtatttgccagaattcaacagaaaaaacacttaacacttcataccaatccaacgttaa |
234 |
Q |
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| T |
15807858 |
cagttattgccagaattctactgaaaaaacagtcaacacttcatatcaatccaacgttaa |
15807799 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 80 - 233
Target Start/End: Complemental strand, 15815823 - 15815673
Alignment:
| Q |
80 |
aacatgacttgtactaaaaggtttctaagcttcattttccttcatttcttcctcttcatgatcctaacaactgcacaatcaccattttacttgtacagta |
179 |
Q |
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| T |
15815823 |
aacatgacttgtactgcaaggtttctaagcttcattctacttcatatttttctcttcac---cttaacaaatgcacaatcaccatattacaggttaaatt |
15815727 |
T |
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| Q |
180 |
tttgccagaattcaacagaaaaaacacttaacacttcataccaatccaacgtta |
233 |
Q |
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| T |
15815726 |
tttgccagaattcaacagaaaaaacaaacaacacatcataccgatccaacgtta |
15815673 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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