View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4970_low_43 (Length: 258)
Name: NF4970_low_43
Description: NF4970
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4970_low_43 |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 249; Significance: 1e-138; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 249; E-Value: 1e-138
Query Start/End: Original strand, 6 - 258
Target Start/End: Complemental strand, 9216458 - 9216206
Alignment:
| Q |
6 |
cataggtgatgttctttgtgtcaaatttttatcattctccgatcacaactcaacactgtgtattcaatagaataagcatagttatctaaaacttaaaggc |
105 |
Q |
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| T |
9216458 |
cataggtgatgttctttgtgtcaaatttttatcattctccgatcacaactcaacactgtgtattcaatagaataagcatagttatctaaaacttaaaggc |
9216359 |
T |
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| Q |
106 |
atgttataaatgagtaaatgaccacttagcactaaacttgcatttgaaggtgtgtgagtatccaacatgtattagtgtctgacaccaacacaatacatat |
205 |
Q |
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| T |
9216358 |
atgttataaatgagtaaatgaccacttagcactaaacttgcatttgaaggtgtgtgagtatccaacatgtattagtgtctgacaccaacacaatacatat |
9216259 |
T |
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| Q |
206 |
cggtgtctgacacgggcatgacacaaacaaatgtaatcatgtacaatcatttc |
258 |
Q |
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| T |
9216258 |
cggtgtctgacacgggcatgacacaaacaaatgtaattatgtacaatcatttc |
9216206 |
T |
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Target: chr2 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 162 - 196
Target Start/End: Complemental strand, 34926917 - 34926883
Alignment:
| Q |
162 |
agtatccaacatgtattagtgtctgacaccaacac |
196 |
Q |
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| T |
34926917 |
agtatccaacatgtatcagtgtctgacaccaacac |
34926883 |
T |
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