View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4970_low_45 (Length: 256)

Name: NF4970_low_45
Description: NF4970
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4970_low_45
NF4970_low_45
[»] scaffold0182 (1 HSPs)
scaffold0182 (10-242)||(30009-30241)
[»] chr2 (3 HSPs)
chr2 (10-242)||(26397724-26397956)
chr2 (22-238)||(26459756-26459979)
chr2 (15-238)||(25830285-25830508)
[»] scaffold0006 (1 HSPs)
scaffold0006 (10-242)||(277119-277351)
[»] chr4 (3 HSPs)
chr4 (11-237)||(56108090-56108316)
chr4 (20-157)||(20646535-20646672)
chr4 (185-238)||(20646471-20646524)
[»] chr6 (1 HSPs)
chr6 (11-237)||(26013857-26014083)
[»] chr1 (3 HSPs)
chr1 (22-238)||(845631-845847)
chr1 (63-238)||(30399986-30400160)
chr1 (63-238)||(30406543-30406717)
[»] chr3 (1 HSPs)
chr3 (11-238)||(33002077-33002304)
[»] chr7 (1 HSPs)
chr7 (11-237)||(6965362-6965587)
[»] chr5 (1 HSPs)
chr5 (11-223)||(13863569-13863782)


Alignment Details
Target: scaffold0182 (Bit Score: 225; Significance: 1e-124; HSPs: 1)
Name: scaffold0182
Description:

Target: scaffold0182; HSP #1
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 10 - 242
Target Start/End: Complemental strand, 30241 - 30009
Alignment:
Q  10 atgtgatggaaaatgggtggtccatggcttcatcaaagatcacaatcatgaactttttccgacatatgcacattattttccttgccatagaacaatcaat 109  Q
    |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  30241 atgtgatggaaaatgggtggtccatggcttgatcaaagatcacaatcatgaactttttccaacatatgcacattattttccttgccatagaacaatcaat 30142  T
Q  110 aaagctcaacagaattgtattgaaactttgcaacatgttggagtgagaacaagcaaaatctttgccacaatggccaaacaacacggaggatatgagaaag 209  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30141 aaagctcaacagaattgtattgaaactttgcaacatgttggagtgagaacaagcaaaatctttgccacaatggccaaacaacacggaggatatgagaaag 30042  T
Q  210 ttggttgcttggagaaagatgttagaaattatt 242  Q
    |||||||||||||||||||||||||||||||||    
T  30041 ttggttgcttggagaaagatgttagaaattatt 30009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 221; Significance: 1e-122; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 221; E-Value: 1e-122
Query Start/End: Original strand, 10 - 242
Target Start/End: Complemental strand, 26397956 - 26397724
Alignment:
Q  10 atgtgatggaaaatgggtggtccatggcttcatcaaagatcacaatcatgaactttttccgacatatgcacattattttccttgccatagaacaatcaat 109  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||    
T  26397956 atgtgatggaaaatgggtggtccatggcttcatcaaagatcacaatcatgaactttttccaacatatgcacattattttccatgccatagaacaatcaat 26397857  T
Q  110 aaagctcaacagaattgtattgaaactttgcaacatgttggagtgagaacaagcaaaatctttgccacaatggccaaacaacacggaggatatgagaaag 209  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  26397856 aaagctcaacagaattgtattgaaactttgcaacatgttggagtgagaacaagcaaaatctttgccacaatggccaaacaacacggaagatatgagaaag 26397757  T
Q  210 ttggttgcttggagaaagatgttagaaattatt 242  Q
    |||||||||||||||||||||||||||||||||    
T  26397756 ttggttgcttggagaaagatgttagaaattatt 26397724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 22 - 238
Target Start/End: Original strand, 26459756 - 26459979
Alignment:
Q  22 atgggtggtccatggcttcatcaaagatcacaatcatgaactttttccgacatatgcacattattttccttgccatagaacaatcaataaagctcaacag 121  Q
    ||||||| ||||||  ||||||||||||||||||||||| ||||||||  ||||||| |||||||||||||||||||||| |||||||||||||||| ||    
T  26459756 atgggtgatccatgaattcatcaaagatcacaatcatgatctttttccagcatatgcgcattattttccttgccatagaagaatcaataaagctcaaaag 26459855  T
Q  122 aattgtatt-------gaaactttgcaacatgttggagtgagaacaagcaaaatctttgccacaatggccaaacaacacggaggatatgagaaagttggt 214  Q
     | ||||||       |||||||||||||||||||| |||| | |||||||| | ||||||||| | || |||||||||||||| |||||||||||||||    
T  26459856 caatgtattgattattgaaactttgcaacatgttggtgtgaaaccaagcaaattttttgccacacttgcgaaacaacacggagggtatgagaaagttggt 26459955  T
Q  215 tgcttggagaaagatgttagaaat 238  Q
    ||||||||||||||| ||| ||||    
T  26459956 tgcttggagaaagatattaaaaat 26459979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 92; E-Value: 9e-45
Query Start/End: Original strand, 15 - 238
Target Start/End: Complemental strand, 25830508 - 25830285
Alignment:
Q  15 atggaaaatgggtggtccatggcttcatcaaagatcacaatcatgaactttttccgacatatgcacattattttccttgccatagaacaatcaataaagc 114  Q
    ||||||||||| | || ||| |||| || ||||||||||||||| |  ||||||| |||||||||||||||||| |||| ||||||| |||||||||  |    
T  25830508 atggaaaatggattgttcatagcttaattaaagatcacaatcataaggtttttccaacatatgcacattatttttcttgtcatagaagaatcaataagtc 25830409  T
Q  115 tcaacagaattgtattgaaactttgcaacatgttggagtgagaacaagcaaaatctttgccacaatggccaaacaacacggaggatatgagaaagttggt 214  Q
    |||| |||| |||||||||||||| ||||||||||| |||| ||||| | |||| || |||||||||||||||||||| ||||| ||||| ||  || |     
T  25830408 tcaaaagaactgtattgaaactttacaacatgttggggtgaaaacaaccgaaattttcgccacaatggccaaacaacatggagggtatgaaaacattagc 25830309  T
Q  215 tgcttggagaaagatgttagaaat 238  Q
    ||||||||||||||  ||||||||    
T  25830308 tgcttggagaaagacattagaaat 25830285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0006 (Bit Score: 217; Significance: 1e-119; HSPs: 1)
Name: scaffold0006
Description:

Target: scaffold0006; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 10 - 242
Target Start/End: Complemental strand, 277351 - 277119
Alignment:
Q  10 atgtgatggaaaatgggtggtccatggcttcatcaaagatcacaatcatgaactttttccgacatatgcacattattttccttgccatagaacaatcaat 109  Q
    |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||    
T  277351 atgtgatggaaaatgggtggtccatggcttaatcaaagatcacaatcatgaactttttccaacatatgcacattattttccatgccatagaacaatcaat 277252  T
Q  110 aaagctcaacagaattgtattgaaactttgcaacatgttggagtgagaacaagcaaaatctttgccacaatggccaaacaacacggaggatatgagaaag 209  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  277251 aaagctcaacagaattgtattgaaactttgcaacatgttggagtgagaacaagcaaaatctttgccacaatggccaaacaacacggaagatatgagaaag 277152  T
Q  210 ttggttgcttggagaaagatgttagaaattatt 242  Q
    |||||||||||||||||||||||||||||||||    
T  277151 ttggttgcttggagaaagatgttagaaattatt 277119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 135; Significance: 2e-70; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 135; E-Value: 2e-70
Query Start/End: Original strand, 11 - 237
Target Start/End: Original strand, 56108090 - 56108316
Alignment:
Q  11 tgtgatggaaaatgggtggtccatggcttcatcaaagatcacaatcatgaactttttccgacatatgcacattattttccttgccatagaacaatcaata 110  Q
    ||||||||||||||| | || ||| ||||||| ||||| |||||||| |||||||||||  |||||||||||||||||||||||||||||  ||||||||    
T  56108090 tgtgatggaaaatggattgttcatagcttcattaaagaccacaatcacgaactttttccagcatatgcacattattttccttgccatagaggaatcaata 56108189  T
Q  111 aagctcaacagaattgtattgaaactttgcaacatgttggagtgagaacaagcaaaatctttgccacaatggccaaacaacacggaggatatgagaaagt 210  Q
    |||||||| || ||| ||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||| || | ||||||||||| ||  |    
T  56108190 aagctcaaaagcattctattgaaactttgcaccatgttggagtgagaacaagcaaaatttttgccacaatggccaaagaatatggaggatatgaaaacat 56108289  T
Q  211 tggttgcttggagaaagatgttagaaa 237  Q
    ||||||||||||||||||||| |||||    
T  56108290 tggttgcttggagaaagatgtaagaaa 56108316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 82; E-Value: 8e-39
Query Start/End: Original strand, 20 - 157
Target Start/End: Complemental strand, 20646672 - 20646535
Alignment:
Q  20 aaatgggtggtccatggcttcatcaaagatcacaatcatgaactttttccgacatatgcacattattttccttgccatagaacaatcaataaagctcaac 119  Q
    ||||||||| |||||| ||| |||||||||||||||||||| ||||||||  ||||||| |||||||||||||||||||||| ||||||| ||||||||     
T  20646672 aaatgggtgatccatgactttatcaaagatcacaatcatgatctttttccagcatatgcgcattattttccttgccatagaagaatcaatcaagctcaaa 20646573  T
Q  120 agaattgtattgaaactttgcaacatgttggagtgaga 157  Q
    |  | |||||||||||||||||||||||||| ||||||    
T  20646572 aacaatgtattgaaactttgcaacatgttggtgtgaga 20646535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 185 - 238
Target Start/End: Complemental strand, 20646524 - 20646471
Alignment:
Q  185 aaacaacacggaggatatgagaaagttggttgcttggagaaagatgttagaaat 238  Q
    |||||||||||||||||||||||||||||||||| |||||||||| ||||||||    
T  20646524 aaacaacacggaggatatgagaaagttggttgctcggagaaagatattagaaat 20646471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 127; Significance: 1e-65; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 127; E-Value: 1e-65
Query Start/End: Original strand, 11 - 237
Target Start/End: Original strand, 26013857 - 26014083
Alignment:
Q  11 tgtgatggaaaatgggtggtccatggcttcatcaaagatcacaatcatgaactttttccgacatatgcacattattttccttgccatagaacaatcaata 110  Q
    ||||||||||||||| | || ||| ||||||| ||||| ||||||||  ||||||||||  |||||||||||||||||||||||||||||  ||||||||    
T  26013857 tgtgatggaaaatggattgttcatagcttcattaaagaccacaatcacaaactttttccagcatatgcacattattttccttgccatagaggaatcaata 26013956  T
Q  111 aagctcaacagaattgtattgaaactttgcaacatgttggagtgagaacaagcaaaatctttgccacaatggccaaacaacacggaggatatgagaaagt 210  Q
    |||||||| || ||| ||||||||||||||| |||||||||||||||||||||||| | |||||||||||||||||| || | ||||||||||| ||  |    
T  26013957 aagctcaaaagcattctattgaaactttgcaccatgttggagtgagaacaagcaaattttttgccacaatggccaaagaatatggaggatatgaaaacat 26014056  T
Q  211 tggttgcttggagaaagatgttagaaa 237  Q
    ||||||||||||||||||||| |||||    
T  26014057 tggttgcttggagaaagatgtaagaaa 26014083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 121; Significance: 4e-62; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 121; E-Value: 4e-62
Query Start/End: Original strand, 22 - 238
Target Start/End: Complemental strand, 845847 - 845631
Alignment:
Q  22 atgggtggtccatggcttcatcaaagatcacaatcatgaactttttccgacatatgcacattattttccttgccatagaacaatcaataaagctcaacag 121  Q
    ||||||| |||||| |||||||||||||||||||||||| ||||||||  ||||||| |||||||||| ||||||||||| ||||||| |||||||| ||    
T  845847 atgggtgatccatgacttcatcaaagatcacaatcatgatctttttccagcatatgcgcattattttctttgccatagaagaatcaatcaagctcaaaag 845748  T
Q  122 aattgtattgaaactttgcaacatgttggagtgagaacaagcaaaatctttgccacaatggccaaacaacacggaggatatgagaaagttggttgcttgg 221  Q
     | ||||||||||||||||||||| |||| |||||| |||||||||| ||||||||| | || |||||||||||||| ||||||||||||||||||| ||    
T  845747 caatgtattgaaactttgcaacatattggtgtgagaccaagcaaaatttttgccacacttgcgaaacaacacggagggtatgagaaagttggttgctcgg 845648  T
Q  222 agaaagatgttagaaat 238  Q
    | |||||| ||| ||||    
T  845647 aaaaagatattataaat 845631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 63 - 238
Target Start/End: Original strand, 30399986 - 30400160
Alignment:
Q  63 tttttccgacatatgcacattattttccttgccatagaacaatcaataaagctcaacagaattgtattgaaactttgcaacatgttggagtgagaacaag 162  Q
    |||||| |||||||||||||||||||||||| ||||||| ||||||||| |||||| ||||||||||||||||||||||||||||||| |||| |||||     
T  30399986 tttttctgacatatgcacattattttccttgtcatagaagaatcaataa-gctcaaaagaattgtattgaaactttgcaacatgttggggtgaaaacaac 30400084  T
Q  163 caaaatctttgccacaatggccaaacaacacggaggatatgagaaagttggttgcttggagaaagatgttagaaat 238  Q
    |||||| |  | || |  | |||||||||| ||| ||||||| ||  |||||||||||||||||||  ||||||||    
T  30400085 caaaatttacgtcatagcgaccaaacaacatggatgatatgaaaacattggttgcttggagaaagacattagaaat 30400160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 63 - 238
Target Start/End: Original strand, 30406543 - 30406717
Alignment:
Q  63 tttttccgacatatgcacattattttccttgccatagaacaatcaataaagctcaacagaattgtattgaaactttgcaacatgttggagtgagaacaag 162  Q
    |||||| |||||||||||||||||||||||| ||||||| ||||||||| |||||| ||||||||||||||||||||||||||||||| |||| |||||     
T  30406543 tttttctgacatatgcacattattttccttgtcatagaagaatcaataa-gctcaaaagaattgtattgaaactttgcaacatgttggggtgaaaacaac 30406641  T
Q  163 caaaatctttgccacaatggccaaacaacacggaggatatgagaaagttggttgcttggagaaagatgttagaaat 238  Q
    |||||| |  | || |  | |||||||||| ||| ||||||| ||  |||||||||||||||||||  ||||||||    
T  30406642 caaaatttacgtcatagcgaccaaacaacatggatgatatgaaaacattggttgcttggagaaagacattagaaat 30406717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 120; Significance: 2e-61; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 11 - 238
Target Start/End: Original strand, 33002077 - 33002304
Alignment:
Q  11 tgtgatggaaaatgggtggtccatggcttcatcaaagatcacaatcatgaactttttccgacatatgcacattattttccttgccatagaacaatcaata 110  Q
    ||||||||||||||| | || ||| ||||||| |||||||||||||||||  ||||||| ||||||||||||||||||||||||||||||| ||||||||    
T  33002077 tgtgatggaaaatggattgttcatagcttcattaaagatcacaatcatgaggtttttccaacatatgcacattattttccttgccatagaagaatcaata 33002176  T
Q  111 aagctcaacagaattgtattgaaactttgcaacatgttggagtgagaacaagcaaaatctttgccacaatggccaaacaacacggaggatatgagaaagt 210  Q
    |  ||||| |||| |||||||||||||| ||||||||||| |||| ||||| |||||| || |||||||||||||||||||| ||||| ||||| ||  |    
T  33002177 agtctcaaaagaactgtattgaaactttacaacatgttggggtgaaaacaaccaaaattttcgccacaatggccaaacaacatggagggtatgaaaacat 33002276  T
Q  211 tggttgcttggagaaagatgttagaaat 238  Q
    ||| ||||||||||||||  ||||||||    
T  33002277 tggatgcttggagaaagacattagaaat 33002304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 115; Significance: 2e-58; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 11 - 237
Target Start/End: Original strand, 6965362 - 6965587
Alignment:
Q  11 tgtgatggaaaatgggtggtccatggcttcatcaaagatcacaatcatgaactttttccgacatatgcacattattttccttgccatagaacaatcaata 110  Q
    ||||||||||||||| | || ||| ||||||| ||||| |||||||   |||||||||   |||||||||||||||||||||||||||||  ||||||||    
T  6965362 tgtgatggaaaatggattgttcatagcttcattaaagaccacaatcccaaactttttctagcatatgcacattattttccttgccatagaggaatcaata 6965461  T
Q  111 aagctcaacagaattgtattgaaactttgcaacatgttggagtgagaacaagcaaaatctttgccacaatggccaaacaacacggaggatatgagaaagt 210  Q
    |||||||| || ||| ||||||||||||||| |||||||||||||||||||||||| | |||||||||||||||||| || | ||||||||||| ||  |    
T  6965462 aagctcaaaagcattctattgaaactttgcaccatgttggagtgagaacaagcaaattttttgccacaatggccaaagaatatggaggatatga-aacat 6965560  T
Q  211 tggttgcttggagaaagatgttagaaa 237  Q
    ||||||||||||||||||||| |||||    
T  6965561 tggttgcttggagaaagatgtaagaaa 6965587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 90; Significance: 1e-43; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 11 - 223
Target Start/End: Original strand, 13863569 - 13863782
Alignment:
Q  11 tgtgatggaaaatgggtggtccatggcttcatcaaagatcacaatcatgaactttttccgacatatgcacattattttccttgccatagaacaatcaata 110  Q
    |||||||  |||||| | || ||| ||||||| ||||| |||||||| ||||||||| |  ||||| |||||||||||||||||||||||  ||||||||    
T  13863569 tgtgatgcgaaatggattgttcatagcttcattaaagaccacaatcacgaacttttttcagcatattcacattattttccttgccatagagaaatcaata 13863668  T
Q  111 aagctcaacagaattgtattgaaactttgcaacatg-ttggagtgagaacaagcaaaatctttgccacaatggccaaacaacacggaggatatgagaaag 209  Q
    |||||||| || ||| ||||||||||||||| |||| |||||||||||||||||||| | |||||||||||||||||| || | | | ||||||| ||      
T  13863669 aagctcaaaagcattctattgaaactttgcaccatgtttggagtgagaacaagcaaattttttgccacaatggccaaagaatatgaaagatatgaaaaca 13863768  T
Q  210 ttggttgcttggag 223  Q
    ||||||||||||||    
T  13863769 ttggttgcttggag 13863782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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