View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4970_low_46 (Length: 255)

Name: NF4970_low_46
Description: NF4970
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4970_low_46
NF4970_low_46
[»] chr3 (32 HSPs)
chr3 (9-240)||(18025765-18025996)
chr3 (122-185)||(38758882-38758945)
chr3 (124-185)||(31596762-31596823)
chr3 (124-185)||(16907930-16907991)
chr3 (124-185)||(24107151-24107212)
chr3 (124-185)||(27864799-27864860)
chr3 (162-237)||(27864866-27864941)
chr3 (124-185)||(3171489-3171550)
chr3 (9-78)||(12146759-12146828)
chr3 (124-185)||(27865073-27865134)
chr3 (124-185)||(46684098-46684159)
chr3 (124-185)||(46685540-46685601)
chr3 (169-240)||(3171680-3171751)
chr3 (122-173)||(11422377-11422428)
chr3 (162-240)||(24107218-24107296)
chr3 (124-185)||(24107426-24107487)
chr3 (124-185)||(38758608-38758669)
chr3 (124-171)||(3171775-3171822)
chr3 (179-242)||(54446204-54446267)
chr3 (127-185)||(54446290-54446349)
chr3 (124-185)||(19860491-19860552)
chr3 (163-240)||(19860681-19860758)
chr3 (32-78)||(27391707-27391753)
chr3 (124-185)||(14812427-14812488)
chr3 (148-185)||(18026126-18026163)
chr3 (140-185)||(21792233-21792278)
chr3 (17-78)||(27348113-27348174)
chr3 (125-177)||(7583955-7584007)
chr3 (144-185)||(21792392-21792433)
chr3 (11-60)||(27376996-27377045)
chr3 (124-177)||(30385181-30385234)
chr3 (124-177)||(42592400-42592453)
[»] chr5 (19 HSPs)
chr5 (124-242)||(15933545-15933663)
chr5 (162-240)||(23322289-23322367)
chr5 (124-185)||(23322373-23322434)
chr5 (122-181)||(43183228-43183287)
chr5 (124-181)||(5841156-5841213)
chr5 (124-185)||(9379930-9379991)
chr5 (124-185)||(34634068-34634129)
chr5 (124-181)||(42792948-42793005)
chr5 (125-185)||(9380728-9380788)
chr5 (127-185)||(5840880-5840938)
chr5 (162-240)||(5841068-5841146)
chr5 (123-181)||(20244530-20244588)
chr5 (124-185)||(23322098-23322159)
chr5 (127-181)||(1501110-1501164)
chr5 (139-181)||(25088419-25088461)
chr5 (139-181)||(25146388-25146430)
chr5 (162-215)||(25088471-25088524)
chr5 (162-215)||(25146440-25146493)
chr5 (124-185)||(15933356-15933417)
[»] chr4 (40 HSPs)
chr4 (122-185)||(9268021-9268084)
chr4 (124-185)||(9450933-9450994)
chr4 (125-185)||(45667232-45667292)
chr4 (122-185)||(3990950-3991013)
chr4 (162-240)||(9268090-9268168)
chr4 (123-185)||(10468755-10468817)
chr4 (162-240)||(16067391-16067469)
chr4 (123-181)||(49028542-49028600)
chr4 (124-185)||(10286410-10286471)
chr4 (124-185)||(28450750-28450811)
chr4 (125-185)||(52677553-52677613)
chr4 (126-185)||(12585433-12585492)
chr4 (122-185)||(17932150-17932213)
chr4 (162-240)||(3990866-3990944)
chr4 (122-184)||(12315853-12315915)
chr4 (127-185)||(25225793-25225851)
chr4 (124-182)||(28451554-28451612)
chr4 (162-240)||(49028454-49028532)
chr4 (124-185)||(4437680-4437741)
chr4 (124-185)||(9449715-9449776)
chr4 (124-185)||(17931288-17931349)
chr4 (162-242)||(21038181-21038261)
chr4 (162-240)||(52677619-52677697)
chr4 (163-240)||(12585349-12585426)
chr4 (169-240)||(622131-622202)
chr4 (162-240)||(10468671-10468749)
chr4 (122-171)||(10468478-10468527)
chr4 (124-185)||(12585158-12585219)
chr4 (140-181)||(49028279-49028320)
chr4 (128-185)||(52677827-52677884)
chr4 (126-185)||(4439048-4439107)
chr4 (127-181)||(10202681-10202735)
chr4 (126-171)||(622346-622391)
chr4 (125-185)||(21325705-21325765)
chr4 (122-174)||(49287428-49287480)
chr4 (138-181)||(35348809-35348852)
chr4 (126-181)||(36098747-36098802)
chr4 (126-185)||(53892253-53892312)
chr4 (127-176)||(21038396-21038445)
chr4 (191-232)||(45667327-45667367)
[»] chr1 (11 HSPs)
chr1 (122-185)||(9114817-9114880)
chr1 (122-185)||(14903804-14903867)
chr1 (124-182)||(14904609-14904667)
chr1 (124-185)||(17690946-17691007)
chr1 (124-185)||(37499447-37499508)
chr1 (126-171)||(37499178-37499223)
chr1 (179-240)||(37499363-37499424)
chr1 (126-185)||(17689738-17689796)
chr1 (147-185)||(9116072-9116110)
chr1 (122-181)||(48492725-48492784)
chr1 (138-181)||(48527546-48527589)
[»] chr6 (13 HSPs)
chr6 (162-240)||(5367606-5367684)
chr6 (163-240)||(3659143-3659220)
chr6 (124-185)||(3659226-3659287)
chr6 (124-183)||(8286788-8286847)
chr6 (124-185)||(5367690-5367750)
chr6 (124-176)||(8287449-8287501)
chr6 (124-185)||(3658952-3659013)
chr6 (122-168)||(5367405-5367451)
chr6 (126-181)||(3720052-3720108)
chr6 (122-156)||(13119207-13119241)
chr6 (124-177)||(9899560-9899613)
chr6 (124-177)||(19048244-19048297)
chr6 (125-157)||(25138795-25138827)
[»] chr2 (16 HSPs)
chr2 (124-185)||(14159206-14159267)
chr2 (122-185)||(4733302-4733365)
chr2 (162-240)||(38695079-38695157)
chr2 (162-240)||(42962835-42962913)
chr2 (124-185)||(4410650-4410711)
chr2 (124-185)||(14160431-14160492)
chr2 (9-78)||(22391972-22392041)
chr2 (124-181)||(38695167-38695224)
chr2 (121-185)||(18166630-18166694)
chr2 (124-185)||(4734227-4734288)
chr2 (124-185)||(18171355-18171416)
chr2 (124-185)||(42963043-42963104)
chr2 (124-183)||(42962768-42962827)
chr2 (140-181)||(38694904-38694945)
chr2 (184-240)||(18171165-18171221)
chr2 (124-177)||(39110072-39110125)
[»] scaffold0069 (2 HSPs)
scaffold0069 (126-185)||(19897-19956)
scaffold0069 (162-240)||(19962-20040)
[»] chr8 (10 HSPs)
chr8 (124-182)||(10536000-10536058)
chr8 (124-185)||(10536802-10536863)
chr8 (125-185)||(18203331-18203391)
chr8 (125-185)||(32539460-32539520)
chr8 (185-240)||(18202964-18203019)
chr8 (126-185)||(30906001-30906060)
chr8 (125-171)||(30905397-30905443)
chr8 (122-177)||(9237761-9237816)
chr8 (148-185)||(32538283-32538320)
chr8 (124-181)||(45385858-45385915)
[»] scaffold0008 (3 HSPs)
scaffold0008 (127-185)||(266895-266953)
scaffold0008 (169-240)||(266811-266882)
scaffold0008 (140-185)||(266637-266682)
[»] chr7 (14 HSPs)
chr7 (123-185)||(8905639-8905701)
chr7 (162-240)||(8905707-8905784)
chr7 (124-185)||(4265251-4265312)
chr7 (124-185)||(18471781-18471842)
chr7 (162-240)||(4265167-4265245)
chr7 (124-185)||(18470139-18470200)
chr7 (127-185)||(8342673-8342731)
chr7 (124-185)||(25749405-25749466)
chr7 (125-185)||(8329056-8329115)
chr7 (122-181)||(7345907-7345966)
chr7 (126-171)||(8905928-8905973)
chr7 (124-177)||(19069957-19070010)
chr7 (124-181)||(44554827-44554884)
chr7 (125-185)||(4264977-4265037)
[»] scaffold0006 (2 HSPs)
scaffold0006 (162-240)||(93698-93776)
scaffold0006 (125-181)||(93633-93688)
[»] scaffold0978 (1 HSPs)
scaffold0978 (9-78)||(3595-3664)


Alignment Details
Target: chr3 (Bit Score: 224; Significance: 1e-123; HSPs: 32)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 9 - 240
Target Start/End: Original strand, 18025765 - 18025996
Alignment:
Q  9 acatcatcatatagtaattcatgagcatagtaataaaacaaaatgtccactttcaaccgtaaatcatcatatagtaattcataaacatacttttatcttg 108  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  18025765 acatcattatatagtaattcatgagcatagtaataaaacaaaatgtccactttcaaccgtaaatcatcatatagtaattcataaacatacttttatcttg 18025864  T
Q  109 ataataaaaagggttggcttaattaatgctttggtcccttaagttatttgttggttacattttggtcccataagttagtatttgttaaccaaataaatcc 208  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  18025865 ataataaaaagggttggcttaattaatgctttggtcccttaagttatttgttggttacattttggtcccataagttagtatttgttaactaaataaatcc 18025964  T
Q  209 tcaccgtcaatattttgccaaaacgttaaata 240  Q
    ||||||||||||||||||||||||||||||||    
T  18025965 tcaccgtcaatattttgccaaaacgttaaata 18025996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 122 - 185
Target Start/End: Complemental strand, 38758945 - 38758882
Alignment:
Q  122 ttggcttaattaatgctttggtcccttaagttatttgttggttacattttggtcccataagtta 185  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  38758945 ttggcttaattaatgatttggtcccttaagttatttgttggttacattttggtcccataagtta 38758882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 124 - 185
Target Start/End: Complemental strand, 31596823 - 31596762
Alignment:
Q  124 ggcttaattaatgctttggtcccttaagttatttgttggttacattttggtcccataagtta 185  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  31596823 ggcttaattaatgatttggtcccttaagttatttgttggttacattttggtcccataagtta 31596762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 124 - 185
Target Start/End: Original strand, 16907930 - 16907991
Alignment:
Q  124 ggcttaattaatgctttggtcccttaagttatttgttggttacattttggtcccataagtta 185  Q
    ||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||    
T  16907930 ggcttaattaatgatttggtcccttaagttatttgttggttacgttttggtcccataagtta 16907991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 124 - 185
Target Start/End: Original strand, 24107151 - 24107212
Alignment:
Q  124 ggcttaattaatgctttggtcccttaagttatttgttggttacattttggtcccataagtta 185  Q
    ||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||    
T  24107151 ggcttaattaatgatttggtcccttgagttatttgttggttacattttggtcccataagtta 24107212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 124 - 185
Target Start/End: Original strand, 27864799 - 27864860
Alignment:
Q  124 ggcttaattaatgctttggtcccttaagttatttgttggttacattttggtcccataagtta 185  Q
    ||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||    
T  27864799 ggcttaattaatgatttggtcccgtaagttatttgttggttacattttggtcccataagtta 27864860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 162 - 237
Target Start/End: Original strand, 27864866 - 27864941
Alignment:
Q  162 gttacattttggtcccataagttagtatttgttaaccaaataaatcctcaccgtcaatattttgccaaaacgttaa 237  Q
    |||||| ||||||||| ||||||||||||||||| |||||||||||||||| |||| | |||||||||||||||||    
T  27864866 gttacaatttggtcccttaagttagtatttgttagccaaataaatcctcactgtcagtcttttgccaaaacgttaa 27864941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 124 - 185
Target Start/End: Original strand, 3171489 - 3171550
Alignment:
Q  124 ggcttaattaatgctttggtcccttaagttatttgttggttacattttggtcccataagtta 185  Q
    ||||||||||||| | |||||||||||||||||||||||||||||||| |||||||||||||    
T  3171489 ggcttaattaatgatgtggtcccttaagttatttgttggttacattttagtcccataagtta 3171550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 9 - 78
Target Start/End: Complemental strand, 12146828 - 12146759
Alignment:
Q  9 acatcatcatatagtaattcatgagcatagtaataaaacaaaatgtccactttcaaccgtaaatcatcat 78  Q
    ||||||| ||||||||| |||| |||||||||||||||| ||||||||||||||||| ||||||||||||    
T  12146828 acatcattatatagtaactcataagcatagtaataaaactaaatgtccactttcaactgtaaatcatcat 12146759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 124 - 185
Target Start/End: Complemental strand, 27865134 - 27865073
Alignment:
Q  124 ggcttaattaatgctttggtcccttaagttatttgttggttacattttggtcccataagtta 185  Q
    ||||||||||||| | |||||||||||||||||||||||||||||||| |||||||||||||    
T  27865134 ggcttaattaatgatgtggtcccttaagttatttgttggttacattttagtcccataagtta 27865073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 124 - 185
Target Start/End: Original strand, 46684098 - 46684159
Alignment:
Q  124 ggcttaattaatgctttggtcccttaagttatttgttggttacattttggtcccataagtta 185  Q
    ||||||||||||| ||||||| ||||||||||||||||||||||||||| ||||||||||||    
T  46684098 ggcttaattaatgatttggtcgcttaagttatttgttggttacattttgatcccataagtta 46684159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 124 - 185
Target Start/End: Complemental strand, 46685601 - 46685540
Alignment:
Q  124 ggcttaattaatgctttggtcccttaagttatttgttggttacattttggtcccataagtta 185  Q
    ||||||||||||| ||||||||||||| |||||| |||||||||||||||||||||||||||    
T  46685601 ggcttaattaatgatttggtcccttaaattatttattggttacattttggtcccataagtta 46685540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 169 - 240
Target Start/End: Complemental strand, 3171751 - 3171680
Alignment:
Q  169 tttggtcccataagttagtatttgttaaccaaataaatcctcaccgtcaatattttgccaaaacgttaaata 240  Q
    ||||||||| ||||||||||| ||||  ||||||||||||||||||||| | ||||||||||||||||||||    
T  3171751 tttggtcccttaagttagtatctgttggccaaataaatcctcaccgtcattcttttgccaaaacgttaaata 3171680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 122 - 173
Target Start/End: Original strand, 11422377 - 11422428
Alignment:
Q  122 ttggcttaattaatgctttggtcccttaagttatttgttggttacattttgg 173  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  11422377 ttggcttaattaatgatttggtcccttaagttatttgttggttacattttgg 11422428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 162 - 240
Target Start/End: Original strand, 24107218 - 24107296
Alignment:
Q  162 gttacattttggtcccataagttagtatttgttaaccaaataaatcctcaccgtcaatattttgccaaaacgttaaata 240  Q
    |||||| ||||||| | ||||||||| | ||||| ||||||||||||||||||||| | ||||||||||||||||||||    
T  24107218 gttacaatttggtcacttaagttagtttctgttagccaaataaatcctcaccgtcagtcttttgccaaaacgttaaata 24107296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 124 - 185
Target Start/End: Complemental strand, 24107487 - 24107426
Alignment:
Q  124 ggcttaattaatgctttggtcccttaagttatttgttggttacattttggtcccataagtta 185  Q
    ||||||||||||| | |||||| |||||||| |||||||||||||||| |||||||||||||    
T  24107487 ggcttaattaatgatgtggtccattaagttaattgttggttacattttagtcccataagtta 24107426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 124 - 185
Target Start/End: Original strand, 38758608 - 38758669
Alignment:
Q  124 ggcttaattaatgctttggtcccttaagttatttgttggttacattttggtcccataagtta 185  Q
    |||||||||| || | | |||||||||||||||||||||||||||||| |||||||||||||    
T  38758608 ggcttaattagtgatgttgtcccttaagttatttgttggttacattttagtcccataagtta 38758669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 124 - 171
Target Start/End: Complemental strand, 3171822 - 3171775
Alignment:
Q  124 ggcttaattaatgctttggtcccttaagttatttgttggttacatttt 171  Q
    ||||||||||||| |||||||||||||||||||||| |||||||||||    
T  3171822 ggcttaattaatgatttggtcccttaagttatttgtcggttacatttt 3171775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 179 - 242
Target Start/End: Complemental strand, 54446267 - 54446204
Alignment:
Q  179 taagttagtatttgttaaccaaataaatcctcaccgtcaatattttgccaaaacgttaaatatg 242  Q
    ||||||||||| ||||| |||||||||||||||  |||| | ||||||||||||||||||||||    
T  54446267 taagttagtatatgttagccaaataaatcctcattgtcattcttttgccaaaacgttaaatatg 54446204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 127 - 185
Target Start/End: Complemental strand, 54446349 - 54446290
Alignment:
Q  127 ttaattaatgctttggtcccttaagttatttgttggttaca-ttttggtcccataagtta 185  Q
    |||||||||| ||||||||||||||||||||||| |||||| ||||||||| ||||||||    
T  54446349 ttaattaatgatttggtcccttaagttatttgttagttacatttttggtcctataagtta 54446290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 124 - 185
Target Start/End: Original strand, 19860491 - 19860552
Alignment:
Q  124 ggcttaattaatgctttggtcccttaagttatttgttggttacattttggtcccataagtta 185  Q
    ||||||||||||| | |||||  ||||||||||| ||||||||||||| |||||||||||||    
T  19860491 ggcttaattaatgatgtggtctattaagttatttattggttacattttagtcccataagtta 19860552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 163 - 240
Target Start/End: Complemental strand, 19860758 - 19860681
Alignment:
Q  163 ttacattttggtcccataagttagtatttgttaaccaaataaatcctcaccgtcaatattttgccaaaacgttaaata 240  Q
    ||||| ||||||||  |||||||  || | ||| ||||||||||||||||||||| | ||||||||||||||||||||    
T  19860758 ttacaatttggtcctttaagttaaaatctattagccaaataaatcctcaccgtcagtcttttgccaaaacgttaaata 19860681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 32 - 78
Target Start/End: Original strand, 27391707 - 27391753
Alignment:
Q  32 agcatagtaataaaacaaaatgtccactttcaaccgtaaatcatcat 78  Q
    |||||||||||||||| ||||||||||||||||| |||||| |||||    
T  27391707 agcatagtaataaaactaaatgtccactttcaacggtaaataatcat 27391753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 124 - 185
Target Start/End: Original strand, 14812427 - 14812488
Alignment:
Q  124 ggcttaattaatgctttggtcccttaagttatttgttggttacattttggtcccataagtta 185  Q
    |||||||| |||| |||| ||  ||||||||||| || ||||||||||||||||||||||||    
T  14812427 ggcttaatcaatgatttgatcatttaagttattttttagttacattttggtcccataagtta 14812488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 148 - 185
Target Start/End: Complemental strand, 18026163 - 18026126
Alignment:
Q  148 taagttatttgttggttacattttggtcccataagtta 185  Q
    |||||||||||||||||||||||| |||||||||||||    
T  18026163 taagttatttgttggttacattttagtcccataagtta 18026126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 140 - 185
Target Start/End: Original strand, 21792233 - 21792278
Alignment:
Q  140 tggtcccttaagttatttgttggttacattttggtcccataagtta 185  Q
    ||||||||||| ||||| |||||||||||||| |||||||||||||    
T  21792233 tggtcccttaatttattggttggttacattttagtcccataagtta 21792278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 17 - 78
Target Start/End: Complemental strand, 27348174 - 27348113
Alignment:
Q  17 atatagtaattcatgagcatagtaataaaacaaaatgtccactttcaaccgtaaatcatcat 78  Q
    |||||| || |||| ||||||||||||| |||||||||||||||||||  | ||||||||||    
T  27348174 atatagcaactcataagcatagtaataatacaaaatgtccactttcaattgcaaatcatcat 27348113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 125 - 177
Target Start/End: Original strand, 7583955 - 7584007
Alignment:
Q  125 gcttaattaatgctttggtcccttaagttatttgttggttacattttggtccc 177  Q
    ||||||| |||||||||||||||||| |||||| || ||| ||||||||||||    
T  7583955 gcttaataaatgctttggtcccttaacttatttttttgtttcattttggtccc 7584007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 144 - 185
Target Start/End: Complemental strand, 21792433 - 21792392
Alignment:
Q  144 cccttaagttatttgttggttacattttggtcccataagtta 185  Q
    |||||||||||||||||| ||||||||||||||  |||||||    
T  21792433 cccttaagttatttgttgtttacattttggtcctctaagtta 21792392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 11 - 60
Target Start/End: Complemental strand, 27377045 - 27376996
Alignment:
Q  11 atcatcatatagtaattcatgagcatagtaataaaacaaaatgtccactt 60  Q
    ||||| ||||||||| |||| |||||||||||| |||||||||| |||||    
T  27377045 atcattatatagtaactcataagcatagtaatagaacaaaatgttcactt 27376996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #31
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 124 - 177
Target Start/End: Original strand, 30385181 - 30385234
Alignment:
Q  124 ggcttaattaatgctttggtcccttaagttatttgttggttacattttggtccc 177  Q
    |||||||||| |  ||||||||||||| |||||| |||||| ||||||||||||    
T  30385181 ggcttaattactcatttggtcccttaacttattttttggtttcattttggtccc 30385234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #32
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 124 - 177
Target Start/End: Original strand, 42592400 - 42592453
Alignment:
Q  124 ggcttaattaatgctttggtcccttaagttatttgttggttacattttggtccc 177  Q
    |||||||||| |  ||||||||||||| |||||| |||||| ||||||||||||    
T  42592400 ggcttaattactcatttggtcccttaacttattttttggtttcattttggtccc 42592453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 75; Significance: 1e-34; HSPs: 19)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 124 - 242
Target Start/End: Complemental strand, 15933663 - 15933545
Alignment:
Q  124 ggcttaattaatgctttggtcccttaagttatttgttggttacattttggtcccataagttagtatttgttaaccaaataaatcctcaccgtcaatattt 223  Q
    ||||||||| ||| |||||||||||||||||||||||||||||||||| ||||| ||||||||||| ||||| |||||||||||||| | || | | |||    
T  15933663 ggcttaattcatgatttggtcccttaagttatttgttggttacattttagtcccttaagttagtatctgttagccaaataaatcctctctgttagtcttt 15933564  T
Q  224 tgccaaaacgttaaatatg 242  Q
    |||||||||||||||||||    
T  15933563 tgccaaaacgttaaatatg 15933545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 162 - 240
Target Start/End: Complemental strand, 23322367 - 23322289
Alignment:
Q  162 gttacattttggtcccataagttagtatttgttaaccaaataaatcctcaccgtcaatattttgccaaaacgttaaata 240  Q
    |||||| ||||||||| ||||||||||| ||||| ||||||||||||||||||||||| ||||| ||||||||||||||    
T  23322367 gttacaatttggtcccttaagttagtatatgttagccaaataaatcctcaccgtcaatcttttgtcaaaacgttaaata 23322289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 124 - 185
Target Start/End: Complemental strand, 23322434 - 23322373
Alignment:
Q  124 ggcttaattaatgctttggtcccttaagttatttgttggttacattttggtcccataagtta 185  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||    
T  23322434 ggcttaattaatgatttggtcccttaagttatttgttggttacattttggttccataagtta 23322373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 122 - 181
Target Start/End: Original strand, 43183228 - 43183287
Alignment:
Q  122 ttggcttaattaatgctttggtcccttaagttatttgttggttacattttggtcccataa 181  Q
    ||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||    
T  43183228 ttggcttaattaataatttggtcccttaagttatttgttggttacattttggtcccataa 43183287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 124 - 181
Target Start/End: Complemental strand, 5841213 - 5841156
Alignment:
Q  124 ggcttaattaatgctttggtcccttaagttatttgttggttacattttggtcccataa 181  Q
    ||||||||||||| ||||||| ||||| ||||||||||||||||||||||||||||||    
T  5841213 ggcttaattaatgatttggtctcttaacttatttgttggttacattttggtcccataa 5841156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 124 - 185
Target Start/End: Original strand, 9379930 - 9379991
Alignment:
Q  124 ggcttaattaatgctttggtcccttaagttatttgttggttacattttggtcccataagtta 185  Q
    |||||||||||||  |||||||||||||||||||||||||||||||||||| ||| ||||||    
T  9379930 ggcttaattaatgaattggtcccttaagttatttgttggttacattttggttccacaagtta 9379991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 124 - 185
Target Start/End: Original strand, 34634068 - 34634129
Alignment:
Q  124 ggcttaattaatgctttggtcccttaagttatttgttggttacattttggtcccataagtta 185  Q
    ||||||||||||| | |||||| ||||||||||||||||||||| |||||||||||||||||    
T  34634068 ggcttaattaatgatgtggtcctttaagttatttgttggttacaatttggtcccataagtta 34634129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 124 - 181
Target Start/End: Original strand, 42792948 - 42793005
Alignment:
Q  124 ggcttaattaatgctttggtcccttaagttatttgttggttacattttggtcccataa 181  Q
    ||||||||||||| ||||||| ||||||||||||||||||| ||||||||||||||||    
T  42792948 ggcttaattaatgatttggtcgcttaagttatttgttggtttcattttggtcccataa 42793005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 125 - 185
Target Start/End: Complemental strand, 9380788 - 9380728
Alignment:
Q  125 gcttaattaatgctttggtcccttaagttatttgttggttacattttggtcccataagtta 185  Q
    ||||||||||||  ||| |||||||||||||||||||||||||||||| ||||||||||||    
T  9380788 gcttaattaatgaattgatcccttaagttatttgttggttacattttgatcccataagtta 9380728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 127 - 185
Target Start/End: Original strand, 5840880 - 5840938
Alignment:
Q  127 ttaattaatgctttggtcccttaagttatttgttggttacattttggtcccataagtta 185  Q
    |||||||||| | |||||||||||||||||||||||||| ||||| || ||||||||||    
T  5840880 ttaattaatgatgtggtcccttaagttatttgttggttatattttagtgccataagtta 5840938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 162 - 240
Target Start/End: Complemental strand, 5841146 - 5841068
Alignment:
Q  162 gttacattttggtcccataagttagtatttgttaaccaaataaatcctcaccgtcaatattttgccaaaacgttaaata 240  Q
    |||||| |||||| |  ||||||||||||||||| ||||||||||||| || |||| | ||||| ||||||||||||||    
T  5841146 gttacaatttggttctttaagttagtatttgttagccaaataaatccttactgtcagtcttttgtcaaaacgttaaata 5841068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 123 - 181
Target Start/End: Complemental strand, 20244588 - 20244530
Alignment:
Q  123 tggcttaattaatgctttggtcccttaagttatttgttggttacattttggtcccataa 181  Q
    |||||||||||||| ||| ||  ||||| ||||||||||||||||||||||||||||||    
T  20244588 tggcttaattaatgattttgttacttaaattatttgttggttacattttggtcccataa 20244530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 124 - 185
Target Start/End: Original strand, 23322098 - 23322159
Alignment:
Q  124 ggcttaattaatgctttggtcccttaagttatttgttggttacattttggtcccataagtta 185  Q
    ||||||||||||| | | |||  ||||||||||||||||||||||||| |||||||||||||    
T  23322098 ggcttaattaatgatgtagtctattaagttatttgttggttacattttagtcccataagtta 23322159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 127 - 181
Target Start/End: Complemental strand, 1501164 - 1501110
Alignment:
Q  127 ttaattaatgctttggtcccttaagttatttgttggttacattttggtcccataa 181  Q
    |||||||||  |||| ||||||||||||||| |||||| ||||||||||||||||    
T  1501164 ttaattaatcatttgatcccttaagttatttattggtttcattttggtcccataa 1501110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 139 - 181
Target Start/End: Original strand, 25088419 - 25088461
Alignment:
Q  139 ttggtcccttaagttatttgttggttacattttggtcccataa 181  Q
    |||||||| |||||||||||||||||||||||||||| |||||    
T  25088419 ttggtcccgtaagttatttgttggttacattttggtcgcataa 25088461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 139 - 181
Target Start/End: Original strand, 25146388 - 25146430
Alignment:
Q  139 ttggtcccttaagttatttgttggttacattttggtcccataa 181  Q
    |||||||| |||||||||||||||||||||||||||| |||||    
T  25146388 ttggtcccgtaagttatttgttggttacattttggtcgcataa 25146430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 162 - 215
Target Start/End: Original strand, 25088471 - 25088524
Alignment:
Q  162 gttacattttggtcccataagttagtatttgttaaccaaataaatcctcaccgt 215  Q
    |||||| ||||||||| || |||||||| ||||| |||||||||||||||||||    
T  25088471 gttacaatttggtcccttatgttagtatctgttagccaaataaatcctcaccgt 25088524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 162 - 215
Target Start/End: Original strand, 25146440 - 25146493
Alignment:
Q  162 gttacattttggtcccataagttagtatttgttaaccaaataaatcctcaccgt 215  Q
    |||||| ||||||||| || |||||||| ||||| |||||||||||||||||||    
T  25146440 gttacaatttggtcccttatgttagtatctgttagccaaataaatcctcaccgt 25146493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 124 - 185
Target Start/End: Original strand, 15933356 - 15933417
Alignment:
Q  124 ggcttaattaatgctttggtcccttaagttatttgttggttacattttggtcccataagtta 185  Q
    |||||||| |||| | ||||||||||  |||||||||||||| ||||| ||| |||||||||    
T  15933356 ggcttaatcaatgatgtggtcccttatattatttgttggttatattttagtctcataagtta 15933417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 56; Significance: 3e-23; HSPs: 40)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 122 - 185
Target Start/End: Original strand, 9268021 - 9268084
Alignment:
Q  122 ttggcttaattaatgctttggtcccttaagttatttgttggttacattttggtcccataagtta 185  Q
    ||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||    
T  9268021 ttggcttaattaatgatttggtcccttaagttatttattggttacattttggtcccataagtta 9268084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 124 - 185
Target Start/End: Complemental strand, 9450994 - 9450933
Alignment:
Q  124 ggcttaattaatgctttggtcccttaagttatttgttggttacattttggtcccataagtta 185  Q
    ||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||    
T  9450994 ggcttaattaatgatttggtcccttaagttatttgttggttacgttttggtcccataagtta 9450933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 125 - 185
Target Start/End: Original strand, 45667232 - 45667292
Alignment:
Q  125 gcttaattaatgctttggtcccttaagttatttgttggttacattttggtcccataagtta 185  Q
    |||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||    
T  45667232 gcttaattaatgatttggtcccttaagttatttgttggttacattttggtctcataagtta 45667292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 122 - 185
Target Start/End: Complemental strand, 3991013 - 3990950
Alignment:
Q  122 ttggcttaattaatgctttggtcccttaagttatttgttggttacattttggtcccataagtta 185  Q
    |||||||||||| || ||||||||||||||||| ||||||||||||||||||||||||||||||    
T  3991013 ttggcttaattattgatttggtcccttaagttaattgttggttacattttggtcccataagtta 3990950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 162 - 240
Target Start/End: Original strand, 9268090 - 9268168
Alignment:
Q  162 gttacattttggtcccataagttagtatttgttaaccaaataaatcctcaccgtcaatattttgccaaaacgttaaata 240  Q
    |||||| ||||||||| ||||||||||||||||| ||||||||||||||||||||| | |||||| |||||| ||||||    
T  9268090 gttacaatttggtcccttaagttagtatttgttagccaaataaatcctcaccgtcagtcttttgcgaaaacgctaaata 9268168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 123 - 185
Target Start/End: Complemental strand, 10468817 - 10468755
Alignment:
Q  123 tggcttaattaatgctttggtcccttaagttatttgttggttacattttggtcccataagtta 185  Q
    |||||||||||||  |||||||||||||||||||||||||||||||||||||| |||||||||    
T  10468817 tggcttaattaatcatttggtcccttaagttatttgttggttacattttggtctcataagtta 10468755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 162 - 240
Target Start/End: Original strand, 16067391 - 16067469
Alignment:
Q  162 gttacattttggtcccataagttagtatttgttaaccaaataaatcctcaccgtcaatattttgccaaaacgttaaata 240  Q
    |||||| |||||||   |||||||||||||| || ||||||||||||||||||||||| ||||||||||||||||||||    
T  16067391 gttacaatttggtcttttaagttagtatttgctagccaaataaatcctcaccgtcaatcttttgccaaaacgttaaata 16067469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 123 - 181
Target Start/End: Complemental strand, 49028600 - 49028542
Alignment:
Q  123 tggcttaattaatgctttggtcccttaagttatttgttggttacattttggtcccataa 181  Q
    |||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||    
T  49028600 tggcttaattaatgatttggtcccttaagttatttattggttacattttggtcccataa 49028542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 124 - 185
Target Start/End: Original strand, 10286410 - 10286471
Alignment:
Q  124 ggcttaattaatgctttggtcccttaagttatttgttggttacattttggtcccataagtta 185  Q
    ||||||||||||| |||||||||||||||||||||||||||||||||| ||||||| |||||    
T  10286410 ggcttaattaatgatttggtcccttaagttatttgttggttacattttagtcccattagtta 10286471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 124 - 185
Target Start/End: Original strand, 28450750 - 28450811
Alignment:
Q  124 ggcttaattaatgctttggtcccttaagttatttgttggttacattttggtcccataagtta 185  Q
    ||||||||||||| ||||||||||||| ||||||||||||||||||||| ||||||||||||    
T  28450750 ggcttaattaatgatttggtcccttaaattatttgttggttacattttgatcccataagtta 28450811  T

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Target: chr4; HSP #11
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 125 - 185
Target Start/End: Original strand, 52677553 - 52677613
Alignment:
Q  125 gcttaattaatgctttggtcccttaagttatttgttggttacattttggtcccataagtta 185  Q
    |||||||||||  |||||||||||||||||||||||||||||| |||||||||||||||||    
T  52677553 gcttaattaattatttggtcccttaagttatttgttggttacaatttggtcccataagtta 52677613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 126 - 185
Target Start/End: Complemental strand, 12585492 - 12585433
Alignment:
Q  126 cttaattaatgctttggtcccttaagttatttgttggttacattttggtcccataagtta 185  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||| || |||||||||    
T  12585492 cttaattaatgatttggtcccttaagttatttgttggttacattttgatctcataagtta 12585433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 122 - 185
Target Start/End: Complemental strand, 17932213 - 17932150
Alignment:
Q  122 ttggcttaattaatgctttggtcccttaagttatttgttggttacattttggtcccataagtta 185  Q
    |||||||||||||||  ||||||||||||||||||| ||||||||| |||||||||||||||||    
T  17932213 ttggcttaattaatgaattggtcccttaagttatttattggttacaatttggtcccataagtta 17932150  T

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Target: chr4; HSP #14
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 162 - 240
Target Start/End: Complemental strand, 3990944 - 3990866
Alignment:
Q  162 gttacattttggtcccataagttagtatttgttaaccaaataaatcctcaccgtcaatattttgccaaaacgttaaata 240  Q
    |||||| ||||||||| ||||||| ||| | ||| ||||||||||||||||||||| | ||||||||||||||||||||    
T  3990944 gttacaatttggtcccttaagttaatatctattagccaaataaatcctcaccgtcagtcttttgccaaaacgttaaata 3990866  T

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Target: chr4; HSP #15
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 122 - 184
Target Start/End: Original strand, 12315853 - 12315915
Alignment:
Q  122 ttggcttaattaatgctttggtcccttaagttatttgttggttacattttggtcccataagtt 184  Q
    ||||||||||||||| |||||||| ||||||||||||| ||||||| ||||||||||||||||    
T  12315853 ttggcttaattaatgatttggtcctttaagttatttgtaggttacaatttggtcccataagtt 12315915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 127 - 185
Target Start/End: Original strand, 25225793 - 25225851
Alignment:
Q  127 ttaattaatgctttggtcccttaagttatttgttggttacattttggtcccataagtta 185  Q
    |||||||||| |||||||||||||||||||||||||||| ||||||||| |||||||||    
T  25225793 ttaattaatgatttggtcccttaagttatttgttggttatattttggtctcataagtta 25225851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 124 - 182
Target Start/End: Complemental strand, 28451612 - 28451554
Alignment:
Q  124 ggcttaattaatgctttggtcccttaagttatttgttggttacattttggtcccataag 182  Q
    ||||||||||||| ||| |||||||||||||||||||||||||||||||||| ||||||    
T  28451612 ggcttaattaatgatttagtcccttaagttatttgttggttacattttggtctcataag 28451554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 162 - 240
Target Start/End: Complemental strand, 49028532 - 49028454
Alignment:
Q  162 gttacattttggtcccataagttagtatttgttaaccaaataaatcctcaccgtcaatattttgccaaaacgttaaata 240  Q
    |||||| ||||||||| ||||||||||||||||| ||||||||||| ||| ||||| | |||||||||||| |||||||    
T  49028532 gttacaatttggtcccttaagttagtatttgttagccaaataaatcttcagcgtcagtcttttgccaaaacattaaata 49028454  T

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Target: chr4; HSP #19
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 124 - 185
Target Start/End: Original strand, 4437680 - 4437741
Alignment:
Q  124 ggcttaattaatgctttggtcccttaagttatttgttggttacattttggtcccataagtta 185  Q
    ||||||||||||| |||||||| |||| |||||||||||||||| |||||||||||||||||    
T  4437680 ggcttaattaatggtttggtccattaaattatttgttggttacaatttggtcccataagtta 4437741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 124 - 185
Target Start/End: Original strand, 9449715 - 9449776
Alignment:
Q  124 ggcttaattaatgctttggtcccttaagttatttgttggttacattttggtcccataagtta 185  Q
    ||||||||||||| |||||||| |||||||||||||||||||| |||||||| |||||||||    
T  9449715 ggcttaattaatgatttggtccattaagttatttgttggttacgttttggtctcataagtta 9449776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 124 - 185
Target Start/End: Original strand, 17931288 - 17931349
Alignment:
Q  124 ggcttaattaatgctttggtcccttaagttatttgttggttacattttggtcccataagtta 185  Q
    |||||||||||||  ||||||||||||||||||| ||||||||| |||||||||||||||||    
T  17931288 ggcttaattaatgaattggtcccttaagttatttattggttacaatttggtcccataagtta 17931349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 162 - 242
Target Start/End: Original strand, 21038181 - 21038261
Alignment:
Q  162 gttacattttggtcccataagttagtatttgttaaccaaataaatcctcaccgtcaatattttgccaaaacgttaaatatg 242  Q
    |||||| ||||||||  ||||||||||| ||||| ||||||||||| ||||| ||||| ||||||||||| ||||||||||    
T  21038181 gttacaatttggtcctttaagttagtatatgttagccaaataaatcatcaccatcaatcttttgccaaaatgttaaatatg 21038261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 162 - 240
Target Start/End: Original strand, 52677619 - 52677697
Alignment:
Q  162 gttacattttggtcccataagttagtatttgttaaccaaataaatcctcaccgtcaatattttgccaaaacgttaaata 240  Q
    |||||| ||||||||  ||||||||||| ||||| ||||||||||||||| ||||||| | ||||||||| ||||||||    
T  52677619 gttacaatttggtccattaagttagtatatgttagccaaataaatcctcaacgtcaatctcttgccaaaatgttaaata 52677697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 163 - 240
Target Start/End: Complemental strand, 12585426 - 12585349
Alignment:
Q  163 ttacattttggtcccataagttagtatttgttaaccaaataaatcctcaccgtcaatattttgccaaaacgttaaata 240  Q
    ||||| ||||||||| ||||||||||| ||||| ||||||||||| ||||  ||| | ||||||||||||||||||||    
T  12585426 ttacaatttggtcccttaagttagtatatgttagccaaataaatcttcactatcagtcttttgccaaaacgttaaata 12585349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 169 - 240
Target Start/End: Original strand, 622131 - 622202
Alignment:
Q  169 tttggtcccataagttagtatttgttaaccaaataaatcctcaccgtcaatattttgccaaaacgttaaata 240  Q
    ||||||||| ||| ||||||||||||| ||||||||||||||| | ||| | ||||| ||||||||||||||    
T  622131 tttggtcccttaaattagtatttgttagccaaataaatcctcatcatcagtcttttgtcaaaacgttaaata 622202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 162 - 240
Target Start/End: Complemental strand, 10468749 - 10468671
Alignment:
Q  162 gttacattttggtcccataagttagtatttgttaaccaaataaatcctcaccgtcaatattttgccaaaacgttaaata 240  Q
    |||||| ||||||||  ||||||||||| || || ||||||||||||||||||||| |  ||||||||||| |||||||    
T  10468749 gttacaatttggtccgttaagttagtatctgctagccaaataaatcctcaccgtcagtcgtttgccaaaacattaaata 10468671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 122 - 171
Target Start/End: Original strand, 10468478 - 10468527
Alignment:
Q  122 ttggcttaattaatgctttggtcccttaagttatttgttggttacatttt 171  Q
    |||||||||||| || | ||||||||||||||||||||||||||||||||    
T  10468478 ttggcttaattactgatgtggtcccttaagttatttgttggttacatttt 10468527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 124 - 185
Target Start/End: Original strand, 12585158 - 12585219
Alignment:
Q  124 ggcttaattaatgctttggtcccttaagttatttgttggttacattttggtcccataagtta 185  Q
    |||||||||||||   |||||||||||||||||||||| ||||||||| ||| |||||||||    
T  12585158 ggcttaattaatgacgtggtcccttaagttatttgttgattacattttagtctcataagtta 12585219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 140 - 181
Target Start/End: Original strand, 49028279 - 49028320
Alignment:
Q  140 tggtcccttaagttatttgttggttacattttggtcccataa 181  Q
    |||||||||||||||||||||||||||||||| |||||||||    
T  49028279 tggtcccttaagttatttgttggttacattttagtcccataa 49028320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 128 - 185
Target Start/End: Complemental strand, 52677884 - 52677827
Alignment:
Q  128 taattaatgctttggtcccttaagttatttgttggttacattttggtcccataagtta 185  Q
    ||||||||| | |||||||||| ||||||||||||||||||||| ||| |||||||||    
T  52677884 taattaatgatgtggtcccttaggttatttgttggttacattttagtctcataagtta 52677827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 126 - 185
Target Start/End: Complemental strand, 4439107 - 4439048
Alignment:
Q  126 cttaattaatgctttggtcccttaagttatttgttggttacattttggtcccataagtta 185  Q
    |||||||||||   |||||||| ||||||||||||||||||| ||||||| |||||||||    
T  4439107 cttaattaatgacgtggtccctaaagttatttgttggttacaatttggtctcataagtta 4439048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 127 - 181
Target Start/End: Original strand, 10202681 - 10202735
Alignment:
Q  127 ttaattaatgctttggtcccttaagttatttgttggttacattttggtcccataa 181  Q
    |||||||||| |||| ||| |||| ||||||| ||||||||||||||||||||||    
T  10202681 ttaattaatgatttgatcctttaaattatttgctggttacattttggtcccataa 10202735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #33
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 126 - 171
Target Start/End: Complemental strand, 622391 - 622346
Alignment:
Q  126 cttaattaatgctttggtcccttaagttatttgttggttacatttt 171  Q
    ||||||||||| | || |||||||||||||||||||||||||||||    
T  622391 cttaattaatgatgtgatcccttaagttatttgttggttacatttt 622346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #34
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 125 - 185
Target Start/End: Complemental strand, 21325765 - 21325705
Alignment:
Q  125 gcttaattaatgctttggtcccttaagttatttgttggttacattttggtcccataagtta 185  Q
    |||||||||||| |||| || ||||| |||||||||||||||||||| ||| ||| |||||    
T  21325765 gcttaattaatgatttgatctcttaaattatttgttggttacattttagtcacattagtta 21325705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #35
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 122 - 174
Target Start/End: Original strand, 49287428 - 49287480
Alignment:
Q  122 ttggcttaattaatgctttggtcccttaagttatttgttggttacattttggt 174  Q
    ||||||||||||||| ||| ||| ||| |||||||||||||||| ||||||||    
T  49287428 ttggcttaattaatgatttagtctctttagttatttgttggttaaattttggt 49287480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #36
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 138 - 181
Target Start/End: Original strand, 35348809 - 35348852
Alignment:
Q  138 tttggtcccttaagttatttgttggttacattttggtcccataa 181  Q
    ||||||||||||||| |||||||| || ||||||||||||||||    
T  35348809 tttggtcccttaagtaatttgttgttttcattttggtcccataa 35348852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #37
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 126 - 181
Target Start/End: Original strand, 36098747 - 36098802
Alignment:
Q  126 cttaattaatgctttggtcccttaagttatttgttggttacattttggtcccataa 181  Q
    ||||||||||| | ||||| |||||||||||||||||||| ||||| || ||||||    
T  36098747 cttaattaatgatgtggtctcttaagttatttgttggttatattttagttccataa 36098802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #38
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 126 - 185
Target Start/End: Original strand, 53892253 - 53892312
Alignment:
Q  126 cttaattaatgctttggtcccttaagttatttgttggttacattttggtcccataagtta 185  Q
    ||||||||||| ||||||  |||||||||||| | ||||||| || ||||||||||||||    
T  53892253 cttaattaatgatttggtttcttaagttatttataggttacaattgggtcccataagtta 53892312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #39
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 127 - 176
Target Start/End: Complemental strand, 21038445 - 21038396
Alignment:
Q  127 ttaattaatgctttggtcccttaagttatttgttggttacattttggtcc 176  Q
    |||||||||| | || |||||||||||||||| |||||||||||| ||||    
T  21038445 ttaattaatgatgtgatcccttaagttatttgctggttacattttagtcc 21038396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #40
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 191 - 232
Target Start/End: Original strand, 45667327 - 45667367
Alignment:
Q  191 tgttaaccaaataaatcctcaccgtcaatattttgccaaaac 232  Q
    ||||| ||||||||||||||||||||||| ||||||||||||    
T  45667327 tgttagccaaataaatcctcaccgtcaat-ttttgccaaaac 45667367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 56; Significance: 3e-23; HSPs: 11)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 122 - 185
Target Start/End: Original strand, 9114817 - 9114880
Alignment:
Q  122 ttggcttaattaatgctttggtcccttaagttatttgttggttacattttggtcccataagtta 185  Q
    ||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||    
T  9114817 ttggcttaattaatgattttgtcccttaagttatttgttggttacattttggtcccataagtta 9114880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 122 - 185
Target Start/End: Original strand, 14903804 - 14903867
Alignment:
Q  122 ttggcttaattaatgctttggtcccttaagttatttgttggttacattttggtcccataagtta 185  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||    
T  14903804 ttggcttaattaatgatttggtcccttaagttatttgttggttacattttgatcccataagtta 14903867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 124 - 182
Target Start/End: Complemental strand, 14904667 - 14904609
Alignment:
Q  124 ggcttaattaatgctttggtcccttaagttatttgttggttacattttggtcccataag 182  Q
    ||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||    
T  14904667 ggcttaattaatgatttagtcccttaagttatttgttggttacattttggtcccataag 14904609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 124 - 185
Target Start/End: Complemental strand, 17691007 - 17690946
Alignment:
Q  124 ggcttaattaatgctttggtcccttaagttatttgttggttacattttggtcccataagtta 185  Q
    ||||||||||||| ||||||||||||||||||||||||||||  || |||||||||||||||    
T  17691007 ggcttaattaatgatttggtcccttaagttatttgttggttatgttctggtcccataagtta 17690946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 124 - 185
Target Start/End: Complemental strand, 37499508 - 37499447
Alignment:
Q  124 ggcttaattaatgctttggtcccttaagttatttgttggttacattttggtcccataagtta 185  Q
    ||||||||||||| ||||  | |||||||||||||||||||||||||||||| |||||||||    
T  37499508 ggcttaattaatgatttgacctcttaagttatttgttggttacattttggtctcataagtta 37499447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 126 - 171
Target Start/End: Original strand, 37499178 - 37499223
Alignment:
Q  126 cttaattaatgctttggtcccttaagttatttgttggttacatttt 171  Q
    ||||||||||| |||||||||||||||||||||||| |||||||||    
T  37499178 cttaattaatgatttggtcccttaagttatttgttgcttacatttt 37499223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 179 - 240
Target Start/End: Complemental strand, 37499424 - 37499363
Alignment:
Q  179 taagttagtatttgttaaccaaataaatcctcaccgtcaatattttgccaaaacgttaaata 240  Q
    ||||||||||| ||||| ||||||||||| | ||||||| | ||||||||||||||||||||    
T  37499424 taagttagtatctgttagccaaataaatcattaccgtcagtcttttgccaaaacgttaaata 37499363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 126 - 185
Target Start/End: Original strand, 17689738 - 17689796
Alignment:
Q  126 cttaattaatgctttggtcccttaagttatttgttggttacattttggtcccataagtta 185  Q
    ||||||||||| |||||||||||||||||||||||| ||||  ||||||| |||||||||    
T  17689738 cttaattaatgatttggtcccttaagttatttgttgattac-gtttggtctcataagtta 17689796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 147 - 185
Target Start/End: Complemental strand, 9116110 - 9116072
Alignment:
Q  147 ttaagttatttgttggttacattttggtcccataagtta 185  Q
    ||||||||||||||||||||||||||||| |||||||||    
T  9116110 ttaagttatttgttggttacattttggtctcataagtta 9116072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 122 - 181
Target Start/End: Original strand, 48492725 - 48492784
Alignment:
Q  122 ttggcttaattaatgctttggtcccttaagttatttgttggttacattttggtcccataa 181  Q
    |||||||||||||  |||||||||  ||| |||||||||| || ||||||||||||||||    
T  48492725 ttggcttaattaaacctttggtcctctaacttatttgttgttttcattttggtcccataa 48492784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 138 - 181
Target Start/End: Original strand, 48527546 - 48527589
Alignment:
Q  138 tttggtcccttaagttatttgttggttacattttggtcccataa 181  Q
    ||||||||| ||||| |||||||| |||||||||||||||||||    
T  48527546 tttggtcccctaagtaatttgttgtttacattttggtcccataa 48527589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 55; Significance: 1e-22; HSPs: 13)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 162 - 240
Target Start/End: Complemental strand, 5367684 - 5367606
Alignment:
Q  162 gttacattttggtcccataagttagtatttgttaaccaaataaatcctcaccgtcaatattttgccaaaacgttaaata 240  Q
    |||||| ||||||||| ||||||||||||||||| ||||||||||||||||||| | | ||||||||||||||||||||    
T  5367684 gttacaatttggtcccttaagttagtatttgttagccaaataaatcctcaccgttagtcttttgccaaaacgttaaata 5367606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 163 - 240
Target Start/End: Complemental strand, 3659220 - 3659143
Alignment:
Q  163 ttacattttggtcccataagttagtatttgttaaccaaataaatcctcaccgtcaatattttgccaaaacgttaaata 240  Q
    ||||| ||||||||| ||||||||||||||||| ||||||||||||||||||| | | ||||||||||||||||||||    
T  3659220 ttacaatttggtcccttaagttagtatttgttagccaaataaatcctcaccgtgagtcttttgccaaaacgttaaata 3659143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 124 - 185
Target Start/End: Complemental strand, 3659287 - 3659226
Alignment:
Q  124 ggcttaattaatgctttggtcccttaagttatttgttggttacattttggtcccataagtta 185  Q
    ||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||    
T  3659287 ggcttaattaatgatttggtcccttaagttatttgttagttacattttggtcccataagtta 3659226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 124 - 183
Target Start/End: Original strand, 8286788 - 8286847
Alignment:
Q  124 ggcttaattaatgctttggtcccttaagttatttgttggttacattttggtcccataagt 183  Q
    ||||||||||||| ||| |||||||||||||||||||||||||||||||||||| |||||    
T  8286788 ggcttaattaatgatttagtcccttaagttatttgttggttacattttggtcccttaagt 8286847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 124 - 185
Target Start/End: Complemental strand, 5367750 - 5367690
Alignment:
Q  124 ggcttaattaatgctttggtcccttaagttatttgttggttacattttggtcccataagtta 185  Q
    ||||||||||||| |||||||| |||||||||||||||||||||||||||| ||||||||||    
T  5367750 ggcttaattaatgatttggtcc-ttaagttatttgttggttacattttggttccataagtta 5367690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 124 - 176
Target Start/End: Complemental strand, 8287501 - 8287449
Alignment:
Q  124 ggcttaattaatgctttggtcccttaagttatttgttggttacattttggtcc 176  Q
    ||||||||||||| |||||||||||||||||||||||||||||||||| ||||    
T  8287501 ggcttaattaatgatttggtcccttaagttatttgttggttacattttagtcc 8287449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 124 - 185
Target Start/End: Original strand, 3658952 - 3659013
Alignment:
Q  124 ggcttaattaatgctttggtcccttaagttatttgttggttacattttggtcccataagtta 185  Q
    |||||||||| || | |||||||||||||||||| ||||||||| ||| |||||||||||||    
T  3658952 ggcttaattactgatgtggtcccttaagttatttattggttacagtttagtcccataagtta 3659013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 122 - 168
Target Start/End: Original strand, 5367405 - 5367451
Alignment:
Q  122 ttggcttaattaatgctttggtcccttaagttatttgttggttacat 168  Q
    |||||||||||| || | |||||||||||||||||||||||||||||    
T  5367405 ttggcttaattactgatatggtcccttaagttatttgttggttacat 5367451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 126 - 181
Target Start/End: Original strand, 3720052 - 3720108
Alignment:
Q  126 cttaattaatgctttggtcccttaagtta-tttgttggttacattttggtcccataa 181  Q
    ||||||||||| ||||||||||||||||| ||| ||  |||||||||||||||||||    
T  3720052 cttaattaatgatttggtcccttaagttattttttttattacattttggtcccataa 3720108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 122 - 156
Target Start/End: Complemental strand, 13119241 - 13119207
Alignment:
Q  122 ttggcttaattaatgctttggtcccttaagttatt 156  Q
    ||||||||||||||| |||||||||||||||||||    
T  13119241 ttggcttaattaatgatttggtcccttaagttatt 13119207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 124 - 177
Target Start/End: Original strand, 9899560 - 9899613
Alignment:
Q  124 ggcttaattaatgctttggtcccttaagttatttgttggttacattttggtccc 177  Q
    |||||||||| |  ||||||||||||| |||||| |||||| ||||||||||||    
T  9899560 ggcttaattactcatttggtcccttaacttattttttggtttcattttggtccc 9899613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 124 - 177
Target Start/End: Original strand, 19048244 - 19048297
Alignment:
Q  124 ggcttaattaatgctttggtcccttaagttatttgttggttacattttggtccc 177  Q
    |||||||||| |  ||||||||||||| |||||| |||||| ||||||||||||    
T  19048244 ggcttaattacttttttggtcccttaacttattttttggtttcattttggtccc 19048297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 125 - 157
Target Start/End: Original strand, 25138795 - 25138827
Alignment:
Q  125 gcttaattaatgctttggtcccttaagttattt 157  Q
    |||||||||||||||||||||||||| ||||||    
T  25138795 gcttaattaatgctttggtcccttaacttattt 25138827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 54; Significance: 4e-22; HSPs: 16)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 124 - 185
Target Start/End: Original strand, 14159206 - 14159267
Alignment:
Q  124 ggcttaattaatgctttggtcccttaagttatttgttggttacattttggtcccataagtta 185  Q
    ||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||    
T  14159206 ggcttaattaatgatttggtcccttaagttatttgttggttacgttttggtcccataagtta 14159267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 122 - 185
Target Start/End: Original strand, 4733302 - 4733365
Alignment:
Q  122 ttggcttaattaatgctttggtcccttaagttatttgttggttacattttggtcccataagtta 185  Q
    ||||||||||||||| |||| |||||||| ||||||||||||||||||||||||||||||||||    
T  4733302 ttggcttaattaatgatttgatcccttaaattatttgttggttacattttggtcccataagtta 4733365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 162 - 240
Target Start/End: Complemental strand, 38695157 - 38695079
Alignment:
Q  162 gttacattttggtcccataagttagtatttgttaaccaaataaatcctcaccgtcaatattttgccaaaacgttaaata 240  Q
    |||||| ||||||||| ||||||||||||||||| ||||||||||||||| ||||| | |||||||||||| |||||||    
T  38695157 gttacaatttggtcccttaagttagtatttgttagccaaataaatcctcaacgtcagtcttttgccaaaacattaaata 38695079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 162 - 240
Target Start/End: Original strand, 42962835 - 42962913
Alignment:
Q  162 gttacattttggtcccataagttagtatttgttaaccaaataaatcctcaccgtcaatattttgccaaaacgttaaata 240  Q
    |||||| ||||||||| ||||||||||| ||||| ||||||||||||||||||||| | |||| |||||||||||||||    
T  42962835 gttacaatttggtcccttaagttagtatatgttagccaaataaatcctcaccgtcagtctttttccaaaacgttaaata 42962913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 124 - 185
Target Start/End: Complemental strand, 4410711 - 4410650
Alignment:
Q  124 ggcttaattaatgctttggtcccttaagttatttgttggttacattttggtcccataagtta 185  Q
    ||||||||||||| |||||||||||||||||||||||||||||| ||||||||| |||||||    
T  4410711 ggcttaattaatgatttggtcccttaagttatttgttggttacaatttggtcccgtaagtta 4410650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 124 - 185
Target Start/End: Complemental strand, 14160492 - 14160431
Alignment:
Q  124 ggcttaattaatgctttggtcccttaagttatttgttggttacattttggtcccataagtta 185  Q
    ||||||||||||| |||||||| |||||||||||||||||||| ||||||||||||||||||    
T  14160492 ggcttaattaatgatttggtccattaagttatttgttggttacgttttggtcccataagtta 14160431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 9 - 78
Target Start/End: Complemental strand, 22392041 - 22391972
Alignment:
Q  9 acatcatcatatagtaattcatgagcatagtaataaaacaaaatgtccactttcaaccgtaaatcatcat 78  Q
    ||||||| ||||||||| |||| |||||||||||||||||||||||||||||||||| ||||||| ||||    
T  22392041 acatcattatatagtaactcataagcatagtaataaaacaaaatgtccactttcaactgtaaatcgtcat 22391972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 124 - 181
Target Start/End: Complemental strand, 38695224 - 38695167
Alignment:
Q  124 ggcttaattaatgctttggtcccttaagttatttgttggttacattttggtcccataa 181  Q
    ||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||    
T  38695224 ggcttaattaatgatttggtcccttaagttatttattggttacattttggtcccataa 38695167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 121 - 185
Target Start/End: Original strand, 18166630 - 18166694
Alignment:
Q  121 gttggcttaattaatgctttggtcccttaagttatttgttggttacattttggtcccataagtta 185  Q
    |||||||||||||||| ||||||||||||| ||||||||||||||||||||| || |||||||||    
T  18166630 gttggcttaattaatgatttggtcccttaaattatttgttggttacattttgatctcataagtta 18166694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 124 - 185
Target Start/End: Complemental strand, 4734288 - 4734227
Alignment:
Q  124 ggcttaattaatgctttggtcccttaagttatttgttggttacattttggtcccataagtta 185  Q
    |||||||||||||  |||||||||||||||||||||||||||||||||| ||| ||||||||    
T  4734288 ggcttaattaatgaattggtcccttaagttatttgttggttacattttgatcctataagtta 4734227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 124 - 185
Target Start/End: Complemental strand, 18171416 - 18171355
Alignment:
Q  124 ggcttaattaatgctttggtcccttaagttatttgttggttacattttggtcccataagtta 185  Q
    ||||||||||||| | ||||||||||| |||||||||||||||||||| |||||||||||||    
T  18171416 ggcttaattaatgatatggtcccttaaattatttgttggttacattttagtcccataagtta 18171355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 124 - 185
Target Start/End: Complemental strand, 42963104 - 42963043
Alignment:
Q  124 ggcttaattaatgctttggtcccttaagttatttgttggttacattttggtcccataagtta 185  Q
    ||||||||||||| | |||||||||||||||||||||||||||||||| ||| |||||||||    
T  42963104 ggcttaattaatgatgtggtcccttaagttatttgttggttacattttagtctcataagtta 42963043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 124 - 183
Target Start/End: Original strand, 42962768 - 42962827
Alignment:
Q  124 ggcttaattaatgctttggtcccttaagttatttgttggttacattttggtcccataagt 183  Q
    ||||||||||||| |||||||||||| |||||||||||||| ||||||| || |||||||    
T  42962768 ggcttaattaatgatttggtcccttaggttatttgttggttgcattttgatctcataagt 42962827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 140 - 181
Target Start/End: Original strand, 38694904 - 38694945
Alignment:
Q  140 tggtcccttaagttatttgttggttacattttggtcccataa 181  Q
    |||||||||||||||||||||||||||||||| |||||||||    
T  38694904 tggtcccttaagttatttgttggttacattttagtcccataa 38694945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 184 - 240
Target Start/End: Original strand, 18171165 - 18171221
Alignment:
Q  184 tagtatttgttaaccaaataaatcctcaccgtcaatattttgccaaaacgttaaata 240  Q
    |||||| ||||| ||||||||||||| ||||||||| |||| |||||||||||||||    
T  18171165 tagtatatgttagccaaataaatccttaccgtcaatctttttccaaaacgttaaata 18171221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 124 - 177
Target Start/End: Original strand, 39110072 - 39110125
Alignment:
Q  124 ggcttaattaatgctttggtcccttaagttatttgttggttacattttggtccc 177  Q
    |||||||||| |  ||||||||||||| |||||| |||||| ||||||||||||    
T  39110072 ggcttaattactcatttggtcccttaacttattttttggtttcattttggtccc 39110125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0069 (Bit Score: 52; Significance: 6e-21; HSPs: 2)
Name: scaffold0069
Description:

Target: scaffold0069; HSP #1
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 126 - 185
Target Start/End: Original strand, 19897 - 19956
Alignment:
Q  126 cttaattaatgctttggtcccttaagttatttgttggttacattttggtcccataagtta 185  Q
    ||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||    
T  19897 cttaattaatgatttggtcccttaagttatttgttggttacattttggtcgcataagtta 19956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0069; HSP #2
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 162 - 240
Target Start/End: Original strand, 19962 - 20040
Alignment:
Q  162 gttacattttggtcccataagttagtatttgttaaccaaataaatcctcaccgtcaatattttgccaaaacgttaaata 240  Q
    |||||| ||||||||| ||||||||||| ||||| ||||||||||||||||||||| | |||||  |||||||||||||    
T  19962 gttacaatttggtcccttaagttagtatctgttagccaaataaatcctcaccgtcagtcttttggtaaaacgttaaata 20040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 51; Significance: 3e-20; HSPs: 10)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 124 - 182
Target Start/End: Original strand, 10536000 - 10536058
Alignment:
Q  124 ggcttaattaatgctttggtcccttaagttatttgttggttacattttggtcccataag 182  Q
    ||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||    
T  10536000 ggcttaattaatgatttagtcccttaagttatttgttggttacattttggtcccataag 10536058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 124 - 185
Target Start/End: Complemental strand, 10536863 - 10536802
Alignment:
Q  124 ggcttaattaatgctttggtcccttaagttatttgttggttacattttggtcccataagtta 185  Q
    ||||||||||||| ||||||||||||| ||||||||||||||||||||| ||||||||||||    
T  10536863 ggcttaattaatgatttggtcccttaaattatttgttggttacattttgatcccataagtta 10536802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 125 - 185
Target Start/End: Complemental strand, 18203391 - 18203331
Alignment:
Q  125 gcttaattaatgctttggtcccttaagttatttgttggttacattttggtcccataagtta 185  Q
    |||||||||||| |||||||||||||||||||| ||||||| |||||||| ||||||||||    
T  18203391 gcttaattaatgatttggtcccttaagttatttattggttatattttggttccataagtta 18203331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 125 - 185
Target Start/End: Complemental strand, 32539520 - 32539460
Alignment:
Q  125 gcttaattaatgctttggtcccttaagttatttgttggttacattttggtcccataagtta 185  Q
    |||||||||||| ||||||||||||||||||||||||||||||||||  || |||||||||    
T  32539520 gcttaattaatgatttggtcccttaagttatttgttggttacattttaatctcataagtta 32539460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 185 - 240
Target Start/End: Complemental strand, 18203019 - 18202964
Alignment:
Q  185 agtatttgttaaccaaataaatcctcaccgtcaatattttgccaaaacgttaaata 240  Q
    ||||| ||||| ||||||||||||||||||||||| ||||||||||||||||||||    
T  18203019 agtatatgttagccaaataaatcctcaccgtcaatcttttgccaaaacgttaaata 18202964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 126 - 185
Target Start/End: Complemental strand, 30906060 - 30906001
Alignment:
Q  126 cttaattaatgctttggtcccttaagttatttgttggttacattttggtcccataagtta 185  Q
    ||||||||||| | ||||| |||||||||||||||||||||||||| |||||||||||||    
T  30906060 cttaattaatgatgtggtctcttaagttatttgttggttacattttagtcccataagtta 30906001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 125 - 171
Target Start/End: Original strand, 30905397 - 30905443
Alignment:
Q  125 gcttaattaatgctttggtcccttaagttatttgttggttacatttt 171  Q
    |||||||||||| ||||||||||||| |||||||||||||| |||||    
T  30905397 gcttaattaatgatttggtcccttaaattatttgttggttatatttt 30905443  T

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Target: chr8; HSP #8
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 122 - 177
Target Start/End: Complemental strand, 9237816 - 9237761
Alignment:
Q  122 ttggcttaattaatgctttggtcccttaagttatttgttggttacattttggtccc 177  Q
    |||||||||||| |  ||||||||||||| |||||| |||||||| ||||||||||    
T  9237816 ttggcttaattattcatttggtcccttaacttattttttggttacgttttggtccc 9237761  T

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Target: chr8; HSP #9
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 148 - 185
Target Start/End: Original strand, 32538283 - 32538320
Alignment:
Q  148 taagttatttgttggttacattttggtcccataagtta 185  Q
    ||||||||||||||||||||||||| || |||||||||    
T  32538283 taagttatttgttggttacattttgatctcataagtta 32538320  T

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Target: chr8; HSP #10
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 124 - 181
Target Start/End: Complemental strand, 45385915 - 45385858
Alignment:
Q  124 ggcttaattaatgctttggtcccttaagttatttgttggttacattttggtcccataa 181  Q
    ||||||||  ||||||||||||||||| |||||| | | || ||||||||||||||||    
T  45385915 ggcttaatacatgctttggtcccttaacttatttttggatttcattttggtcccataa 45385858  T

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Target: scaffold0008 (Bit Score: 47; Significance: 6e-18; HSPs: 3)
Name: scaffold0008
Description:

Target: scaffold0008; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 127 - 185
Target Start/End: Complemental strand, 266953 - 266895
Alignment:
Q  127 ttaattaatgctttggtcccttaagttatttgttggttacattttggtcccataagtta 185  Q
    |||||||||| |||||||| ||||||||||||||||||||||||||||| |||||||||    
T  266953 ttaattaatgatttggtcctttaagttatttgttggttacattttggtcacataagtta 266895  T

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Target: scaffold0008; HSP #2
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 169 - 240
Target Start/End: Complemental strand, 266882 - 266811
Alignment:
Q  169 tttggtcccataagttagtatttgttaaccaaataaatcctcaccgtcaatattttgccaaaacgttaaata 240  Q
    ||||||||| ||||||||||| ||||| ||||||||||| ||||||| ||  |||| |||||||||||||||    
T  266882 tttggtcccttaagttagtatctgttagccaaataaatcttcaccgttaaccttttcccaaaacgttaaata 266811  T

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Target: scaffold0008; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 140 - 185
Target Start/End: Original strand, 266637 - 266682
Alignment:
Q  140 tggtcccttaagttatttgttggttacattttggtcccataagtta 185  Q
    |||| ||||||||||||||||||||||||||| |||| ||||||||    
T  266637 tggttccttaagttatttgttggttacattttagtccgataagtta 266682  T

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Target: chr7 (Bit Score: 47; Significance: 6e-18; HSPs: 14)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 123 - 185
Target Start/End: Original strand, 8905639 - 8905701
Alignment:
Q  123 tggcttaattaatgctttggtcccttaagttatttgttggttacattttggtcccataagtta 185  Q
    ||||||||| |||| ||||||| |||||||||||||||||||||||||||||| |||||||||    
T  8905639 tggcttaatcaatgatttggtctcttaagttatttgttggttacattttggtctcataagtta 8905701  T

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Target: chr7; HSP #2
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 162 - 240
Target Start/End: Original strand, 8905707 - 8905784
Alignment:
Q  162 gttacattttggtcccataagttagtatttgttaaccaaataaatcctcaccgtcaatattttgccaaaacgttaaata 240  Q
    |||||| |||| ||||| |||||||||||||||| ||||||||||||||||||||  | ||||||||||||||||||||    
T  8905707 gttacaatttgatccca-aagttagtatttgttagccaaataaatcctcaccgtcggtcttttgccaaaacgttaaata 8905784  T

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Target: chr7; HSP #3
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 124 - 185
Target Start/End: Complemental strand, 4265312 - 4265251
Alignment:
Q  124 ggcttaattaatgctttggtcccttaagttatttgttggttacattttggtcccataagtta 185  Q
    ||||||||||||| ||||||||||||||||| |||| |||||||||||| ||||||||||||    
T  4265312 ggcttaattaatgatttggtcccttaagttagttgtcggttacattttgatcccataagtta 4265251  T

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Target: chr7; HSP #4
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 124 - 185
Target Start/End: Complemental strand, 18471842 - 18471781
Alignment:
Q  124 ggcttaattaatgctttggtcccttaagttatttgttggttacattttggtcccataagtta 185  Q
    |||||| |||||| |||||||||||||||||| ||||||||||||||||||| |||||||||    
T  18471842 ggcttagttaatgatttggtcccttaagttatctgttggttacattttggtctcataagtta 18471781  T

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Target: chr7; HSP #5
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 162 - 240
Target Start/End: Complemental strand, 4265245 - 4265167
Alignment:
Q  162 gttacattttggtcccataagttagtatttgttaaccaaataaatcctcaccgtcaatattttgccaaaacgttaaata 240  Q
    |||||| ||||||||  ||||||||||| ||||  |||||||||||||||| |||| | ||||||||||||||||||||    
T  4265245 gttacaatttggtccattaagttagtatctgtttgccaaataaatcctcactgtcagtcttttgccaaaacgttaaata 4265167  T

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Target: chr7; HSP #6
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 124 - 185
Target Start/End: Original strand, 18470139 - 18470200
Alignment:
Q  124 ggcttaattaatgctttggtcccttaagttatttgttggttacattttggtcccataagtta 185  Q
    ||||||||||||| ||| || |||||| |||||||||||||||||||||| | |||||||||    
T  18470139 ggcttaattaatgattttgtgccttaaattatttgttggttacattttggccacataagtta 18470200  T

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Target: chr7; HSP #7
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 127 - 185
Target Start/End: Complemental strand, 8342731 - 8342673
Alignment:
Q  127 ttaattaatgctttggtcccttaagttatttgttggttacattttggtcccataagtta 185  Q
    ||||||||||  ||||||| ||||||||||| ||||||||| ||||||| |||||||||    
T  8342731 ttaattaatgaattggtccattaagttattttttggttacactttggtctcataagtta 8342673  T

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Target: chr7; HSP #8
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 124 - 185
Target Start/End: Complemental strand, 25749466 - 25749405
Alignment:
Q  124 ggcttaattaatgctttggtcccttaagttatttgttggttacattttggtcccataagtta 185  Q
    ||||||||||||  | || ||||||||||||||||||||||||| ||| ||| |||||||||    
T  25749466 ggcttaattaattatgtgttcccttaagttatttgttggttacaatttagtctcataagtta 25749405  T

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Target: chr7; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 125 - 185
Target Start/End: Complemental strand, 8329115 - 8329056
Alignment:
Q  125 gcttaattaatgctttggtcccttaagttatttgttggttacattttggtcccataagtta 185  Q
    ||||||||||||  ||||||  ||||||||||||||||||||||||||||| || ||||||    
T  8329115 gcttaattaatgaattggtct-ttaagttatttgttggttacattttggtctcaaaagtta 8329056  T

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Target: chr7; HSP #10
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 122 - 181
Target Start/End: Original strand, 7345907 - 7345966
Alignment:
Q  122 ttggcttaattaatgctttggtcccttaagttatttgttggttacattttggtcccataa 181  Q
    ||||||||||  ||||||||||||||||| |||||| | | || ||||||||||||||||    
T  7345907 ttggcttaatacatgctttggtcccttaacttatttttggatttcattttggtcccataa 7345966  T

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Target: chr7; HSP #11
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 126 - 171
Target Start/End: Complemental strand, 8905973 - 8905928
Alignment:
Q  126 cttaattaatgctttggtcccttaagttatttgttggttacatttt 171  Q
    ||||||||||| | || ||||||||||||||||||||||| |||||    
T  8905973 cttaattaatgatgtgatcccttaagttatttgttggttatatttt 8905928  T

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Target: chr7; HSP #12
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 124 - 177
Target Start/End: Complemental strand, 19070010 - 19069957
Alignment:
Q  124 ggcttaattaatgctttggtcccttaagttatttgttggttacattttggtccc 177  Q
    |||||||||| |  ||||||||||||| |||||| |||||| ||||||||||||    
T  19070010 ggcttaattacttttttggtcccttaacttattttttggtttcattttggtccc 19069957  T

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Target: chr7; HSP #13
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 124 - 181
Target Start/End: Complemental strand, 44554884 - 44554827
Alignment:
Q  124 ggcttaattaatgctttggtcccttaagttatttgttggttacattttggtcccataa 181  Q
    |||||||||||  |||||||||  ||| |||||||||| || ||||||||||||||||    
T  44554884 ggcttaattaaacctttggtcctctaacttatttgttgttttcattttggtcccataa 44554827  T

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Target: chr7; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 125 - 185
Target Start/End: Original strand, 4264977 - 4265037
Alignment:
Q  125 gcttaattaatgctttggtcccttaagttatttgttggttacattttggtcccataagtta 185  Q
    |||||||||||| | |||||  ||||||||||| ||||| ||||||| ||| |||||||||    
T  4264977 gcttaattaatgatgtggtcttttaagttattttttggtgacattttagtctcataagtta 4265037  T

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Target: scaffold0006 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 2)
Name: scaffold0006
Description:

Target: scaffold0006; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 162 - 240
Target Start/End: Original strand, 93698 - 93776
Alignment:
Q  162 gttacattttggtcccataagttagtatttgttaaccaaataaatcctcaccgtcaatattttgccaaaacgttaaata 240  Q
    |||||| ||| ||||| ||||||| ||||||||| ||||||||||| ||||||| | | ||||||||||||||||||||    
T  93698 gttacaatttagtcccttaagttactatttgttagccaaataaatcttcaccgtgagtcttttgccaaaacgttaaata 93776  T

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Target: scaffold0006; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 125 - 181
Target Start/End: Original strand, 93633 - 93688
Alignment:
Q  125 gcttaattaatgctttggtcccttaagttatttgttggttacattttggtcccataa 181  Q
    |||||||||||| |||| ||| |||||||||||||| ||||||||||||||||||||    
T  93633 gcttaattaatgatttgatcc-ttaagttatttgttagttacattttggtcccataa 93688  T

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Target: scaffold0978 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 1)
Name: scaffold0978
Description:

Target: scaffold0978; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 9 - 78
Target Start/End: Complemental strand, 3664 - 3595
Alignment:
Q  9 acatcatcatatagtaattcatgagcatagtaataaaacaaaatgtccactttcaaccgtaaatcatcat 78  Q
    ||||||| ||||||||| |||| |||||||||||||||| |||| | |||||||||| ||||||||||||    
T  3664 acatcattatatagtaactcataagcatagtaataaaactaaatattcactttcaactgtaaatcatcat 3595  T

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