View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4970_low_50 (Length: 245)
Name: NF4970_low_50
Description: NF4970
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4970_low_50 |
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Alignment Details
Target: chr1 (Bit Score: 217; Significance: 1e-119; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 4 - 228
Target Start/End: Complemental strand, 46734648 - 46734424
Alignment:
| Q |
4 |
caatttaaaacctagattcgatgctgaaataacaaatcttgagagaggacaataccttatactatctaatcacattgaataggattgtaacaataccgcg |
103 |
Q |
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| T |
46734648 |
caatttaaaacctagattcgatgctgaaacaacaaatcttgagagaggacaataccttatactatctaatcacattgaataggattgtaacaataccgcg |
46734549 |
T |
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| Q |
104 |
acaacgatcacaatttaaatcctagattcgatgctgaaagaacaaacctcgagagaatacaataccttatactatctattcacattgaataggattgtaa |
203 |
Q |
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| T |
46734548 |
acaacgatcacaatttaaatcctagattcgatgccgaaagaacaaacctcgagagaatacaataccttatactatctattcacattgaataggattgtaa |
46734449 |
T |
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| Q |
204 |
cataaccgcgacaacaatcacaatt |
228 |
Q |
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| T |
46734448 |
cataaccgcgacaacaatcacaatt |
46734424 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 116; E-Value: 4e-59
Query Start/End: Original strand, 1 - 192
Target Start/End: Complemental strand, 46734541 - 46734350
Alignment:
| Q |
1 |
tcacaatttaaaacctagattcgatgctgaaataacaaatcttgagagaggacaataccttatactatctaatcacattgaataggattgtaacaatacc |
100 |
Q |
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| T |
46734541 |
tcacaatttaaatcctagattcgatgccgaaagaacaaacctcgagagaatacaataccttatactatctattcacattgaataggattgtaacataacc |
46734442 |
T |
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| Q |
101 |
gcgacaacgatcacaatttaaatcctagattcgatgctgaaagaacaaacctcgagagaatacaataccttatactatctattcacattgaa |
192 |
Q |
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| T |
46734441 |
gcgacaacaatcacaatttgaaacctagattcgaggctgaaagaacaaacctagagagaatatgataccttatactatctaattacattgaa |
46734350 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 101 - 228
Target Start/End: Complemental strand, 46734661 - 46734534
Alignment:
| Q |
101 |
gcgacaacgatcacaatttaaatcctagattcgatgctgaaagaacaaacctcgagagaatacaataccttatactatctattcacattgaataggattg |
200 |
Q |
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||||||||| | ||||||||| ||||||||||||||||||| |||||| || |||||| |||||||||||||||||||| |||||||||||||||||| |
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| T |
46734661 |
gcgacaacggttgcaatttaaaacctagattcgatgctgaaacaacaaatcttgagagaggacaataccttatactatctaatcacattgaataggattg |
46734562 |
T |
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| Q |
201 |
taacataaccgcgacaacaatcacaatt |
228 |
Q |
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| T |
46734561 |
taacaataccgcgacaacgatcacaatt |
46734534 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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