View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4970_low_54 (Length: 238)

Name: NF4970_low_54
Description: NF4970
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4970_low_54
NF4970_low_54
[»] chr7 (7 HSPs)
chr7 (171-218)||(38766171-38766218)
chr7 (171-218)||(38832149-38832196)
chr7 (172-218)||(28517500-28517546)
chr7 (172-214)||(36931919-36931961)
chr7 (183-222)||(45003106-45003145)
chr7 (176-212)||(5825125-5825161)
chr7 (186-218)||(40726693-40726725)
[»] chr1 (3 HSPs)
chr1 (172-218)||(5453943-5453989)
chr1 (173-223)||(48841290-48841340)
chr1 (172-212)||(47459531-47459571)
[»] chr6 (4 HSPs)
chr6 (172-218)||(7749329-7749375)
chr6 (172-218)||(17249518-17249564)
chr6 (175-214)||(33220928-33220967)
chr6 (172-202)||(32531077-32531107)
[»] chr5 (9 HSPs)
chr5 (176-218)||(35310300-35310342)
chr5 (172-221)||(27336543-27336592)
chr5 (173-218)||(2917574-2917619)
chr5 (178-218)||(33692265-33692305)
chr5 (173-212)||(430451-430490)
chr5 (172-218)||(13413515-13413561)
chr5 (174-218)||(13167123-13167167)
chr5 (172-220)||(18176762-18176812)
chr5 (173-210)||(25663253-25663290)
[»] chr4 (15 HSPs)
chr4 (172-218)||(3329844-3329890)
chr4 (172-218)||(50001139-50001185)
chr4 (167-212)||(41372287-41372332)
chr4 (170-214)||(55933677-55933721)
chr4 (172-223)||(12917897-12917948)
chr4 (183-218)||(31846962-31846997)
chr4 (172-207)||(53619434-53619469)
chr4 (182-218)||(4419122-4419158)
chr4 (174-218)||(48657126-48657170)
chr4 (172-211)||(9657460-9657499)
chr4 (187-218)||(39001260-39001291)
chr4 (172-214)||(23255561-23255603)
chr4 (174-207)||(9514063-9514096)
chr4 (173-210)||(28977314-28977351)
chr4 (172-216)||(46441104-46441148)
[»] chr3 (2 HSPs)
chr3 (172-218)||(26772606-26772652)
chr3 (172-214)||(38671097-38671139)
[»] chr2 (4 HSPs)
chr2 (172-222)||(28224848-28224898)
chr2 (172-218)||(38724005-38724051)
chr2 (172-210)||(34250208-34250246)
chr2 (182-218)||(27494169-27494205)
[»] chr8 (4 HSPs)
chr8 (172-223)||(42659075-42659126)
chr8 (172-208)||(39434517-39434553)
chr8 (178-218)||(44337194-44337234)
chr8 (172-206)||(25326162-25326196)


Alignment Details
Target: chr7 (Bit Score: 48; Significance: 1e-18; HSPs: 7)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 171 - 218
Target Start/End: Original strand, 38766171 - 38766218
Alignment:
Q  171 aatttactatcaatattacttacacatgaataggaggcaagcgggcaa 218  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||    
T  38766171 aatttactatcaatattacttacacatgaataggaggcaagcgggcaa 38766218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 171 - 218
Target Start/End: Original strand, 38832149 - 38832196
Alignment:
Q  171 aatttactatcaatattacttacacatgaataggaggcaagcgggcaa 218  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||    
T  38832149 aatttactatcaatattacttacatatgaataggaggcaagcgggcaa 38832196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 172 - 218
Target Start/End: Complemental strand, 28517546 - 28517500
Alignment:
Q  172 atttactatcaatattacttacacatgaataggaggcaagcgggcaa 218  Q
    ||||||||||||||||||||||||||||||||||||||  |||||||    
T  28517546 atttactatcaatattacttacacatgaataggaggcagacgggcaa 28517500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 172 - 214
Target Start/End: Complemental strand, 36931961 - 36931919
Alignment:
Q  172 atttactatcaatattacttacacatgaataggaggcaagcgg 214  Q
    ||||||||||||||||||||||| |||||||||||||||||||    
T  36931961 atttactatcaatattacttacatatgaataggaggcaagcgg 36931919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 183 - 222
Target Start/End: Complemental strand, 45003145 - 45003106
Alignment:
Q  183 atattacttacacatgaataggaggcaagcgggcaataag 222  Q
    |||||||||||||||||||||||||||||||| |||||||    
T  45003145 atattacttacacatgaataggaggcaagcggacaataag 45003106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 176 - 212
Target Start/End: Original strand, 5825125 - 5825161
Alignment:
Q  176 actatcaatattacttacacatgaataggaggcaagc 212  Q
    |||||||||||| ||||||||||||||||||||||||    
T  5825125 actatcaatatttcttacacatgaataggaggcaagc 5825161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 186 - 218
Target Start/End: Complemental strand, 40726725 - 40726693
Alignment:
Q  186 ttacttacacatgaataggaggcaagcgggcaa 218  Q
    |||||||||||||||||||||||||||||||||    
T  40726725 ttacttacacatgaataggaggcaagcgggcaa 40726693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 47; Significance: 6e-18; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 172 - 218
Target Start/End: Original strand, 5453943 - 5453989
Alignment:
Q  172 atttactatcaatattacttacacatgaataggaggcaagcgggcaa 218  Q
    |||||||||||||||||||||||||||||||||||||||||||||||    
T  5453943 atttactatcaatattacttacacatgaataggaggcaagcgggcaa 5453989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 173 - 223
Target Start/End: Complemental strand, 48841340 - 48841290
Alignment:
Q  173 tttactatcaatattacttacacatgaataggaggcaagcgggcaataagt 223  Q
    |||||||| ||||||||||||||||||||| |||| |||||| ||| ||||    
T  48841340 tttactattaatattacttacacatgaatatgaggtaagcggacaacaagt 48841290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 172 - 212
Target Start/End: Original strand, 47459531 - 47459571
Alignment:
Q  172 atttactatcaatattacttacacatgaataggaggcaagc 212  Q
    |||||| ||||||||| |||||||||||||||||| |||||    
T  47459531 atttacgatcaatattccttacacatgaataggagccaagc 47459571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 172 - 218
Target Start/End: Original strand, 7749329 - 7749375
Alignment:
Q  172 atttactatcaatattacttacacatgaataggaggcaagcgggcaa 218  Q
    ||||||||||||||||| |||||||||||||||||||||||||||||    
T  7749329 atttactatcaatattagttacacatgaataggaggcaagcgggcaa 7749375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 172 - 218
Target Start/End: Complemental strand, 17249564 - 17249518
Alignment:
Q  172 atttactatcaatattacttacacatgaataggaggcaagcgggcaa 218  Q
    ||||||||||||||||||||| |||||||||||||||||||||||||    
T  17249564 atttactatcaatattacttatacatgaataggaggcaagcgggcaa 17249518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 175 - 214
Target Start/End: Complemental strand, 33220967 - 33220928
Alignment:
Q  175 tactatcaatattacttacacatgaataggaggcaagcgg 214  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  33220967 tactatcaatattacttacacatgaataggaggcaagcgg 33220928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 172 - 202
Target Start/End: Complemental strand, 32531107 - 32531077
Alignment:
Q  172 atttactatcaatattacttacacatgaata 202  Q
    |||||||||||||||||||||||||||||||    
T  32531107 atttactatcaatattacttacacatgaata 32531077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 9)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 176 - 218
Target Start/End: Original strand, 35310300 - 35310342
Alignment:
Q  176 actatcaatattacttacacatgaataggaggcaagcgggcaa 218  Q
    |||||||||||||||||||||||||||||||||||||||||||    
T  35310300 actatcaatattacttacacatgaataggaggcaagcgggcaa 35310342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 172 - 221
Target Start/End: Original strand, 27336543 - 27336592
Alignment:
Q  172 atttactatcaatattacttacacatgaataggaggcaagcgggcaataa 221  Q
    ||||||||||||||||||||||||||||||||||| ||||||| ||||||    
T  27336543 atttactatcaatattacttacacatgaataggagacaagcggacaataa 27336592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 173 - 218
Target Start/End: Complemental strand, 2917619 - 2917574
Alignment:
Q  173 tttactatcaatattacttacacatgaataggaggcaagcgggcaa 218  Q
    ||||||||||||||||| |||||||||||||||||||||| |||||    
T  2917619 tttactatcaatattacctacacatgaataggaggcaagcaggcaa 2917574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 178 - 218
Target Start/End: Complemental strand, 33692305 - 33692265
Alignment:
Q  178 tatcaatattacttacacatgaataggaggcaagcgggcaa 218  Q
    ||||||||||||||||||||||||||||||||||| |||||    
T  33692305 tatcaatattacttacacatgaataggaggcaagcaggcaa 33692265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 173 - 212
Target Start/End: Original strand, 430451 - 430490
Alignment:
Q  173 tttactatcaatattacttacacatgaataggaggcaagc 212  Q
    ||||||||||||||||||| ||||||||||||||||||||    
T  430451 tttactatcaatattacttgcacatgaataggaggcaagc 430490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 172 - 218
Target Start/End: Original strand, 13413515 - 13413561
Alignment:
Q  172 atttactatcaatattacttacacatgaataggaggcaagcgggcaa 218  Q
    |||||||||||| ||||||||||||| |||||||| |||||||||||    
T  13413515 atttactatcaaaattacttacacatcaataggagacaagcgggcaa 13413561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 174 - 218
Target Start/End: Complemental strand, 13167167 - 13167123
Alignment:
Q  174 ttactatcaatattacttacacatgaataggaggcaagcgggcaa 218  Q
    ||||| ||||||||| |||||||||||||||||||||| ||||||    
T  13167167 ttactttcaatattaattacacatgaataggaggcaagtgggcaa 13167123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 172 - 220
Target Start/End: Original strand, 18176762 - 18176812
Alignment:
Q  172 atttactatcaatattacttac--acatgaataggaggcaagcgggcaata 220  Q
    ||||||||||||||||||||||  |||||||||||||| ||||| ||||||    
T  18176762 atttactatcaatattacttacatacatgaataggagggaagcgagcaata 18176812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 173 - 210
Target Start/End: Complemental strand, 25663290 - 25663253
Alignment:
Q  173 tttactatcaatattacttacacatgaataggaggcaa 210  Q
    ||||||||||||||||||||||||| || |||||||||    
T  25663290 tttactatcaatattacttacacataaaaaggaggcaa 25663253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 15)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 172 - 218
Target Start/End: Original strand, 3329844 - 3329890
Alignment:
Q  172 atttactatcaatattacttacacatgaataggaggcaagcgggcaa 218  Q
    |||||||||||||||||||||||| ||||||||||||||||||||||    
T  3329844 atttactatcaatattacttacacgtgaataggaggcaagcgggcaa 3329890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 172 - 218
Target Start/End: Complemental strand, 50001185 - 50001139
Alignment:
Q  172 atttactatcaatattacttacacatgaataggaggcaagcgggcaa 218  Q
    ||||||||| |||||||||||||||||||||||||||||||||||||    
T  50001185 atttactattaatattacttacacatgaataggaggcaagcgggcaa 50001139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 167 - 212
Target Start/End: Complemental strand, 41372332 - 41372287
Alignment:
Q  167 aattaatttactatcaatattacttacacatgaataggaggcaagc 212  Q
    |||| |||| ||||||||||||||||||||||||||||||||||||    
T  41372332 aatttattttctatcaatattacttacacatgaataggaggcaagc 41372287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 170 - 214
Target Start/End: Complemental strand, 55933721 - 55933677
Alignment:
Q  170 taatttactatcaatattacttacacatgaataggaggcaagcgg 214  Q
    ||||||| |||||||||||||| ||||||||||||||||||||||    
T  55933721 taatttaatatcaatattacttgcacatgaataggaggcaagcgg 55933677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 172 - 223
Target Start/End: Original strand, 12917897 - 12917948
Alignment:
Q  172 atttactatcaatattacttacacatgaataggaggcaagcgggcaataagt 223  Q
    |||||||||||||||||||||| |||||||| ||||||||| | ||||||||    
T  12917897 atttactatcaatattacttactcatgaataagaggcaagcagacaataagt 12917948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 183 - 218
Target Start/End: Original strand, 31846962 - 31846997
Alignment:
Q  183 atattacttacacatgaataggaggcaagcgggcaa 218  Q
    ||||||||||||||||||||||||||||||||||||    
T  31846962 atattacttacacatgaataggaggcaagcgggcaa 31846997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 172 - 207
Target Start/End: Original strand, 53619434 - 53619469
Alignment:
Q  172 atttactatcaatattacttacacatgaataggagg 207  Q
    ||||||||||||||||||||||||||||||||||||    
T  53619434 atttactatcaatattacttacacatgaataggagg 53619469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 182 - 218
Target Start/End: Original strand, 4419122 - 4419158
Alignment:
Q  182 aatattacttacacatgaataggaggcaagcgggcaa 218  Q
    |||||||||| ||||||||||||||||||||||||||    
T  4419122 aatattacttgcacatgaataggaggcaagcgggcaa 4419158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 174 - 218
Target Start/End: Complemental strand, 48657170 - 48657126
Alignment:
Q  174 ttactatcaatattacttacacatgaataggaggcaagcgggcaa 218  Q
    ||||||||||||||||||| ||||||||||||| ||||| |||||    
T  48657170 ttactatcaatattacttatacatgaataggagccaagcaggcaa 48657126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 172 - 211
Target Start/End: Complemental strand, 9657499 - 9657460
Alignment:
Q  172 atttactatcaatattacttacacatgaataggaggcaag 211  Q
    ||||||||||||||||||||||||||||||| || |||||    
T  9657499 atttactatcaatattacttacacatgaataagaagcaag 9657460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 187 - 218
Target Start/End: Original strand, 39001260 - 39001291
Alignment:
Q  187 tacttacacatgaataggaggcaagcgggcaa 218  Q
    ||||||||||||||||||||||||||||||||    
T  39001260 tacttacacatgaataggaggcaagcgggcaa 39001291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 172 - 214
Target Start/End: Original strand, 23255561 - 23255603
Alignment:
Q  172 atttactatcaatattacttacacatgaataggaggcaagcgg 214  Q
    ||||||||||||||||||| ||| |||||||||||| ||||||    
T  23255561 atttactatcaatattactcacatatgaataggaggtaagcgg 23255603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 174 - 207
Target Start/End: Complemental strand, 9514096 - 9514063
Alignment:
Q  174 ttactatcaatattacttacacatgaataggagg 207  Q
    ||||||||||||||||||||| ||||||||||||    
T  9514096 ttactatcaatattacttacatatgaataggagg 9514063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 173 - 210
Target Start/End: Complemental strand, 28977351 - 28977314
Alignment:
Q  173 tttactatcaatattacttacacatgaataggaggcaa 210  Q
    |||||||||||||||| |||| ||||||||||||||||    
T  28977351 tttactatcaatattaattacgcatgaataggaggcaa 28977314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 172 - 216
Target Start/End: Complemental strand, 46441148 - 46441104
Alignment:
Q  172 atttactatcaatattacttacacatgaataggaggcaagcgggc 216  Q
    ||||||||||| ||||||||||| ||||||| ||| |||||||||    
T  46441148 atttactatcagtattacttacaaatgaataagagacaagcgggc 46441104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 172 - 218
Target Start/End: Original strand, 26772606 - 26772652
Alignment:
Q  172 atttactatcaatattacttacacatgaataggaggcaagcgggcaa 218  Q
    ||||| |||||||||||||||||||||||||||||||||||||||||    
T  26772606 atttattatcaatattacttacacatgaataggaggcaagcgggcaa 26772652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 172 - 214
Target Start/End: Complemental strand, 38671139 - 38671097
Alignment:
Q  172 atttactatcaatattacttacacatgaataggaggcaagcgg 214  Q
    ||||||||||||||||| |||||||| ||||||||| ||||||    
T  38671139 atttactatcaatattatttacacataaataggaggtaagcgg 38671097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 172 - 222
Target Start/End: Original strand, 28224848 - 28224898
Alignment:
Q  172 atttactatcaatattacttacacatgaataggaggcaagcgggcaataag 222  Q
    ||||||||||||||||||||||| ||||||||||| |||||||||||||||    
T  28224848 atttactatcaatattacttacaaatgaataggagacaagcgggcaataag 28224898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 172 - 218
Target Start/End: Complemental strand, 38724051 - 38724005
Alignment:
Q  172 atttactatcaatattacttacacatgaataggaggcaagcgggcaa 218  Q
    |||||||||||||||||||||||||| ||||||||||||||| ||||    
T  38724051 atttactatcaatattacttacacataaataggaggcaagcgagcaa 38724005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 172 - 210
Target Start/End: Complemental strand, 34250246 - 34250208
Alignment:
Q  172 atttactatcaatattacttacacatgaataggaggcaa 210  Q
    ||||| ||||||||||||||||||||||||| |||||||    
T  34250246 atttaatatcaatattacttacacatgaatatgaggcaa 34250208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 182 - 218
Target Start/End: Original strand, 27494169 - 27494205
Alignment:
Q  182 aatattacttacacatgaataggaggcaagcgggcaa 218  Q
    ||||||||||||| ||||||||||||||||| |||||    
T  27494169 aatattacttacatatgaataggaggcaagcaggcaa 27494205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 172 - 223
Target Start/End: Original strand, 42659075 - 42659126
Alignment:
Q  172 atttactatcaatattacttacacatgaataggaggcaagcgggcaataagt 223  Q
    ||||||||||||||||||||||||| ||||||||||||||||| ||| ||||    
T  42659075 atttactatcaatattacttacacaagaataggaggcaagcggacaacaagt 42659126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 172 - 208
Target Start/End: Original strand, 39434517 - 39434553
Alignment:
Q  172 atttactatcaatattacttacacatgaataggaggc 208  Q
    |||||||||||||||||||||||||||||||||||||    
T  39434517 atttactatcaatattacttacacatgaataggaggc 39434553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 178 - 218
Target Start/End: Original strand, 44337194 - 44337234
Alignment:
Q  178 tatcaatattacttacacatgaataggaggcaagcgggcaa 218  Q
    |||||||||||||||||||||||||||||||||||| ||||    
T  44337194 tatcaatattacttacacatgaataggaggcaagcgagcaa 44337234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 172 - 206
Target Start/End: Original strand, 25326162 - 25326196
Alignment:
Q  172 atttactatcaatattacttacacatgaataggag 206  Q
    ||||||||||||||||||||||||||| |||||||    
T  25326162 atttactatcaatattacttacacatggataggag 25326196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University