View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4970_low_6 (Length: 560)
Name: NF4970_low_6
Description: NF4970
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4970_low_6 |
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Alignment Details
Target: chr8 (Bit Score: 274; Significance: 1e-153; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 274; E-Value: 1e-153
Query Start/End: Original strand, 1 - 350
Target Start/End: Complemental strand, 29596215 - 29595865
Alignment:
| Q |
1 |
agtaggcaacaaactgcttg-gcatgtttgaatacaacacatgacggcgcatctcatattcatgatcaacacacttatctacttactagtnnnnnnntct |
99 |
Q |
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| T |
29596215 |
agtaggcaacaaactgcttgagcatgttagaatacaacacatgacggcgcatctcatgttcatgatcaacacacttatctacttactagtaaaaaaatct |
29596116 |
T |
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| Q |
100 |
tatactacaagtctgtttggatccacggtggggctctgcagacgcgcggtttttcgaagcatcaaatactagcttcgcaattatcacaattagtggtttg |
199 |
Q |
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| T |
29596115 |
tatactacaagtctgtttggatccacggtggggctatgcagacacgcggtttttcgaagcaccaaatactagcttcgcaattttcacgattagtggtatg |
29596016 |
T |
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| Q |
200 |
ttagtcgcgtgtttgatgtaagaaaattcgggaatcaaacacatactacaacattggtgtcattgaaaggaggtaaatctttttcttaatgtgtttcgta |
299 |
Q |
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|||| ||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
29596015 |
ttagacgcgtgtttgatgtaagaagattcgggaatcaaacacatactaaaacattggtgtcattgaaaggaggtaaatctttttcttcatgtgtttcgta |
29595916 |
T |
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| Q |
300 |
gttagtataaaatctcatctacttagaaccgcaaaactgtctcaaatcttg |
350 |
Q |
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| T |
29595915 |
gttagtataaaatctcatctacttagaaccgcaaaactgtctcaaatcttg |
29595865 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 419 - 512
Target Start/End: Complemental strand, 29595784 - 29595691
Alignment:
| Q |
419 |
accgaaattactcttgtttgatgaatcgttggatattaaaggtgattataccatttattcaaactttgatttatcacattaaaaaactagaaaa |
512 |
Q |
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| T |
29595784 |
accgaaattactcttgtttgatgaatcgttggatattaaaggtgatcgtatcatttattcaaactttgatttatcacattaaaaaactagaaaa |
29595691 |
T |
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