View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4970_low_8 (Length: 520)
Name: NF4970_low_8
Description: NF4970
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4970_low_8 |
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| [»] scaffold0385 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 130; Significance: 4e-67; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 130; E-Value: 4e-67
Query Start/End: Original strand, 108 - 253
Target Start/End: Complemental strand, 28308754 - 28308609
Alignment:
| Q |
108 |
aagataattttttactgaaaatgatgagactatgaaaagaccattcataagcttaggatcatatacattaatcaattggcctgaaagtcaaacacaagaa |
207 |
Q |
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| T |
28308754 |
aagataattttttattgaaaatgatgagactatgaaaagagcattcataaacttaggatcatatacattaatcaattggcctgaaagtcaaacacaagaa |
28308655 |
T |
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| Q |
208 |
gagataataaggcttttgccatcttttgacaaaaacaaaatcctta |
253 |
Q |
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| T |
28308654 |
gagataataaggcttttgccatcttttgacaaaaacaaaattctta |
28308609 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 90; E-Value: 3e-43
Query Start/End: Original strand, 17 - 118
Target Start/End: Complemental strand, 28309149 - 28309048
Alignment:
| Q |
17 |
cattcctaggtatgaacaatacaacccttcttctgatgtggacatcccatgggtaggagagggggattcttaaatgcatatgttttttgtgaagataatt |
116 |
Q |
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| T |
28309149 |
cattcctaggtatgaacagtacaacccttcttctgatgtggacatcccatgggtaggagaggggaattcttaaatgcatatgttttttgtgaagatattt |
28309050 |
T |
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| Q |
117 |
tt |
118 |
Q |
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|| |
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| T |
28309049 |
tt |
28309048 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 399 - 472
Target Start/End: Original strand, 30669709 - 30669782
Alignment:
| Q |
399 |
agaaacaagagagagagttgcaatatttactattttccaattatgcccctttgttgcattaggaaaagacaaaa |
472 |
Q |
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| T |
30669709 |
agaaacaggcgagagagttgcaatttttgcaattttccaattatgcccttccattgcatgaagaaaagacaaaa |
30669782 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 220 - 248
Target Start/End: Original strand, 13200339 - 13200367
Alignment:
| Q |
220 |
cttttgccatcttttgacaaaaacaaaat |
248 |
Q |
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| T |
13200339 |
cttttgccatcttttgacaaaaacaaaat |
13200367 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 44; Significance: 8e-16; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 350 - 478
Target Start/End: Original strand, 25051564 - 25051692
Alignment:
| Q |
350 |
attaaaacctgtggggcccactgnnnnnnnagtcttcccattgttgccaagaaacaagagagagagttgcaatatttactattttccaattatgcccctt |
449 |
Q |
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| T |
25051564 |
attaaaacctgtggggcccactatttttagagtcttctcatggatgggaagaaataggggagagagttccaatatttcttatcttccaattatgcccctt |
25051663 |
T |
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| Q |
450 |
tgttgcattaggaaaagacaaaaacgtaa |
478 |
Q |
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| T |
25051664 |
cattgcatgaggaaaagacaaaaacgtaa |
25051692 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 41; Significance: 0.00000000000005; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 351 - 484
Target Start/End: Original strand, 11314948 - 11315080
Alignment:
| Q |
351 |
ttaaaacctgtggggcccactgnnnnnnnagtcttcccattgttgccaagaaacaagagagagagttgcaatatttactattttccaattatgccccttt |
450 |
Q |
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| T |
11314948 |
ttaaaacctgtgggacccactgtttttttagccttcccatggatgagaagaaacaggggagagaattgcaatatttgttattttccaattatgcccctct |
11315047 |
T |
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| Q |
451 |
gttgcattaggaaaagacaaaaacgtaaatataa |
484 |
Q |
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| T |
11315048 |
attgca-taaaaaaagacaaaaacgcaaatataa |
11315080 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 302 - 330
Target Start/End: Original strand, 45052573 - 45052601
Alignment:
| Q |
302 |
gtcttgcatttctcttgtttggttgtggt |
330 |
Q |
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| T |
45052573 |
gtcttgcatttctcttgtttggttgtggt |
45052601 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0385 (Bit Score: 38; Significance: 0.000000000003; HSPs: 1)
Name: scaffold0385
Description:
Target: scaffold0385; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 409 - 478
Target Start/End: Original strand, 11181 - 11250
Alignment:
| Q |
409 |
gagagagttgcaatatttactattttccaattatgcccctttgttgcattaggaaaagacaaaaacgtaa |
478 |
Q |
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| T |
11181 |
gagagagttccaatatttcttatcttccaattataccccttcattgcatgaggaaaagacaaaaacgtaa |
11250 |
T |
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