View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4970_low_9 (Length: 497)

Name: NF4970_low_9
Description: NF4970
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4970_low_9
NF4970_low_9
[»] chr2 (3 HSPs)
chr2 (7-490)||(35209594-35210079)
chr2 (232-338)||(10211249-10211355)
chr2 (44-164)||(23772075-23772195)
[»] chr4 (4 HSPs)
chr4 (7-470)||(29508118-29508584)
chr4 (230-470)||(2542615-2542855)
chr4 (230-470)||(48444619-48444859)
chr4 (44-173)||(48444432-48444561)
[»] scaffold0577 (2 HSPs)
scaffold0577 (254-470)||(4147-4363)
scaffold0577 (7-133)||(4474-4600)
[»] chr5 (3 HSPs)
chr5 (98-413)||(27454488-27454804)
chr5 (203-276)||(14492668-14492741)
chr5 (44-81)||(14492859-14492896)
[»] chr8 (3 HSPs)
chr8 (44-165)||(26706015-26706136)
chr8 (230-470)||(32284712-32284952)
chr8 (342-386)||(10998098-10998142)
[»] chr3 (3 HSPs)
chr3 (229-386)||(21687768-21687925)
chr3 (7-127)||(51194163-51194283)
chr3 (232-368)||(51193921-51194057)
[»] scaffold0004 (2 HSPs)
scaffold0004 (230-412)||(214415-214597)
scaffold0004 (7-160)||(214191-214344)
[»] chr6 (2 HSPs)
chr6 (44-165)||(7605959-7606080)
chr6 (354-470)||(32955514-32955630)


Alignment Details
Target: chr2 (Bit Score: 431; Significance: 0; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 431; E-Value: 0
Query Start/End: Original strand, 7 - 490
Target Start/End: Complemental strand, 35210079 - 35209594
Alignment:
Q  7 gaaggcaatagctaaaggaaagaaaagtgaagtttctcttaagttggatattagtaaatcttatgacaggttagattagaagtatttgcgtgatatcatg 106  Q
    |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||    
T  35210079 gaaggcaatagctaaaggaaagaaaaatgaagtttctcttaagttggatattagtaaatcttatgacagattagattagaagtatttgcatgatatcatg 35209980  T
Q  107 ggtcaaacgggtttctcatcttgatggattaacgggatcatgcttcgtgctgagacggtggactattggtctatgtaaatggagcaactgtaggacctat 206  Q
    ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||    
T  35209979 ggtcaaacgggtttctcatcttgatcgattaacgggatcatgcttcgtgctgagacggtggactatcggtctatgtcaatggagcaactgtaggacctat 35209880  T
Q  207 tatgttgggtcgtggttttcgatagggtgatcctctttcaccctaccttttcattatttgtgttgaaggtttatccttccttgttcacgaagttgatcgt 306  Q
    |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |    
T  35209879 tatgttgggttgtggttttcgatagggtgatcctctttcaccctaccttttcattatttgtgttgaaggtttatccttccttgttcacgaagttgatcat 35209780  T
Q  307 cgaaatgatattagatgtatcatgatttgcacgggtgcacccgttacttctcac--attctcttcacagacgattgttttctattttttggagcatgtga 404  Q
    ||||||||||||||| |||||||||||||||||||||| |||||||||||||||  || |||||||||||||||||||||||||||||||||||||||||    
T  35209779 cgaaatgatattagaggtatcatgatttgcacgggtgcgcccgttacttctcacatatcctcttcacagacgattgttttctattttttggagcatgtga 35209680  T
Q  405 aggtgaggcggttgttatggaatatatattggttgtttatgaagaagcttcgaggcaagctattaacttatagaaagtagaattat 490  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35209679 aggtgaggcggttgttatggaatatatattggttgtttatgaagaagcttcgaggcaagctattaacttatagaaagtagaattat 35209594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 232 - 338
Target Start/End: Original strand, 10211249 - 10211355
Alignment:
Q  232 ggtgatcctctttcaccctaccttttcattatttgtgttgaaggtttatccttccttgttcacgaagttgatcgtcgaaatgatattagatgtatcatga 331  Q
    ||||||||||||||||| || || ||||||||||||||||||||  | |||| |||| ||| ||||| ||| ||| | |||||||||||| |||  ||||    
T  10211249 ggtgatcctctttcaccttatctgttcattatttgtgttgaaggcctctcctcccttcttcgcgaagctgaacgttgtaatgatattagaggtactatga 10211348  T
Q  332 tttgcac 338  Q
    | |||||    
T  10211349 tatgcac 10211355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 44 - 164
Target Start/End: Complemental strand, 23772195 - 23772075
Alignment:
Q  44 cttaagttggatattagtaaatcttatgacaggttagattagaagtatttgcgtgatatcatgggtcaaacgggtttctcatcttgatggattaacggga 143  Q
    ||||||||||| ||||||||| ||||||| ||  |||||| | | ||| | || |||||||||  ||||| ||||||||||||| ||||| ||| | | |    
T  23772195 cttaagttggacattagtaaagcttatgatagactagattgggattatctacgagatatcatgattcaaatgggtttctcatctcgatgggttagctgta 23772096  T
Q  144 tcatgcttcgtgctgagacgg 164  Q
    | |||||| ||| ||||||||    
T  23772095 ttatgctttgtgttgagacgg 23772075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 148; Significance: 7e-78; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 148; E-Value: 7e-78
Query Start/End: Original strand, 7 - 470
Target Start/End: Original strand, 29508118 - 29508584
Alignment:
Q  7 gaaggcaatagctaaaggaaagaaaagtgaagtttctcttaagttggatattagtaaatcttatgacaggttagattagaagtatttgcgtgatatcatg 106  Q
    |||||||| | |||||||||||||| |||| ||| |||||||| |||||||||  ||| ||||||||| |||||||| | | ||| ||||| |||||||     
T  29508118 gaaggcaaaaactaaaggaaagaaaggtgatgttgctcttaagctggatattatcaaagcttatgacaagttagattgggaatatatgcgtcatatcata 29508217  T
Q  107 ggtcaaacgggtttctcatcttgatggattaacgggatcatgcttcgtgctgagacggtggactattg-gtctatgtaaatggagcaactgtaggaccta 205  Q
    ||||||| ||| ||||| ||| |||||||||||  |||||||||| ||| |||||||||||| ||||  | ||   | |||||||||| |||||||||||    
T  29508218 ggtcaaatgggattctcgtctcgatggattaactagatcatgctttgtgttgagacggtggaatattctggcttgatcaatggagcaattgtaggaccta 29508317  T
Q  206 ttatgttgggtcgtggttttcgatagggtgatcctctttcaccctaccttttcattatttgtgttgaaggtttatccttccttgttcacgaagttgatcg 305  Q
    || ||| |||| ||||| ||||| ||   |||||||||||||| |||||||| |||||||| |||||||||||||| | |||| |||  |||| ||  ||    
T  29508318 ttgtgtagggttgtggtcttcgacagaacgatcctctttcaccatacctttttattatttgcgttgaaggtttatcatcccttattcgtgaagctgggcg 29508417  T
Q  306 tcgaaatgatattagatgtatcatgatttgcacgggtgcacccgttacttctcacattctcttcacagacgattgttttctattttttggagcatgtgaa 405  Q
    |  ||||||||||||| ||  |||||||||||||| ||| ||  ||| ||||||| | |||||  ||||||||||||||||||||||| |||| ||||||    
T  29508418 tataaatgatattagaggtgccatgatttgcacggatgcgccaattatttctcacctcctctttgcagacgattgttttctattttttagagcttgtgaa 29508517  T
Q  406 ggtgaggcggttgttatg--gaatatatattggttgtttatgaagaagcttcgaggcaagctattaa 470  Q
     | ||||| |||||||||   || |||||||||||||||||||||||||||||  |||| |||||||    
T  29508518 tgagaggcagttgttatgaaaaaaatatattggttgtttatgaagaagcttcggagcaaactattaa 29508584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 230 - 470
Target Start/End: Original strand, 2542615 - 2542855
Alignment:
Q  230 agggtgatcctctttcaccctaccttttcattatttgtgttgaaggtttatccttccttgttcacgaagttgatcgtcgaaatgatattagatgtatcat 329  Q
    |||||||||| || ||||| || || ||||  || |||||||||||  | |||| |||| |||  |||| ||| | ||| |||||||||||| |||  ||    
T  2542615 agggtgatcccctctcaccttatctattcaacatctgtgttgaaggcctttcctcccttattcgtgaagctgaacatcgtaatgatattagaggtaatat 2542714  T
Q  330 gatttgcacgggtgcacccgttacttctcacattctcttcacagacgattgttttctattttttggagcatgtgaaggtgaggcggttgttatggaatat 429  Q
    ||| || ||   ||||||  ||| ||||||| |||||||  |||||||||||||||| || |||||||| |||||| ||||||| |||  |||| || ||    
T  2542715 gatatggacaaatgcaccaattatttctcaccttctctttgcagacgattgttttcttttctttggagcttgtgaacgtgaggctgtttgtatgaaaaat 2542814  T
Q  430 atattggttgtttatgaagaagcttcgaggcaagctattaa 470  Q
    || |||| |   |||||||| | ||| |||||||| |||||    
T  2542815 attttggctacctatgaagaggtttctaggcaagccattaa 2542855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 230 - 470
Target Start/End: Original strand, 48444619 - 48444859
Alignment:
Q  230 agggtgatcctctttcaccctaccttttcattatttgtgttgaaggtttatccttccttgttcacgaagttgatcgtcgaaatgatattagatgtatcat 329  Q
    |||||||||| |||||||| ||  | ||||| ||||||||||||||| | |||| |||| |||  |||| ||| ||| | ||||| |||||| |||  ||    
T  48444619 agggtgatcccctttcaccttatttattcatcatttgtgttgaaggtctttcctcccttattcgtgaagctgaacgttgtaatgacattagaggtactat 48444718  T
Q  330 gatttgcacgggtgcacccgttacttctcacattctcttcacagacgattgttttctattttttggagcatgtgaaggtgaggcggttgttatggaatat 429  Q
    ||| ||||| | || ||| |||| ||||||  |||||||  |||||| ||| ||||| || ||| |||| |||||  ||||||| |||  |||| |  ||    
T  48444719 gatatgcacagatgtaccagttatttctcatcttctctttgcagacggttgctttcttttctttagagcttgtgatcgtgaggctgtttgtatgaagaat 48444818  T
Q  430 atattggttgtttatgaagaagcttcgaggcaagctattaa 470  Q
    || |||| |  |||||||||||||||| |||| || |||||    
T  48444819 attttggctacttatgaagaagcttcggggcaggccattaa 48444859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 44 - 173
Target Start/End: Original strand, 48444432 - 48444561
Alignment:
Q  44 cttaagttggatattagtaaatcttatgacaggttagattagaagtatttgcgtgatatcatgggtcaaacgggtttctcatcttgatggattaacggga 143  Q
    ||||||||||| ||||||||| ||||||| ||  |||||| | | ||| | || |||||||||  | ||| ||||||||||||| | ||| ||| | |||    
T  48444432 cttaagttggacattagtaaagcttatgatagactagattgggactatctacgagatatcatgatttaaatgggtttctcatctcgttgggttagctgga 48444531  T
Q  144 tcatgcttcgtgctgagacggtggactatt 173  Q
    | |||||| ||| ||||||||| |||||||    
T  48444532 ttatgctttgtgttgagacggttgactatt 48444561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0577 (Bit Score: 53; Significance: 3e-21; HSPs: 2)
Name: scaffold0577
Description:

Target: scaffold0577; HSP #1
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 254 - 470
Target Start/End: Complemental strand, 4363 - 4147
Alignment:
Q  254 ttttcattatttgtgttgaaggtttatccttccttgttcacgaagttgatcgtcgaaatgatattagatgtatcatgatttgcacgggtgcacccgttac 353  Q
    ||||||| ||||||||||||||| | ||||  ||  |||  |||| ||| ||||| |||||||||||| |||  ||||| ||||| | ||||||  |||     
T  4363 ttttcatcatttgtgttgaaggtctttcctctctgattcgtgaagctgaacgtcgcaatgatattagaggtactatgatatgcacagatgcaccaattat 4264  T
Q  354 ttctcacattctcttcacagacgattgttttctattttttggagcatgtgaaggtgaggcggttgttatggaatatatattggttgtttatgaagaagct 453  Q
    ||||||| |||||||  |||||||||||||||| || ||| |||| |||||| ||| ||| |||  |||| || |||| |||| |  |||||||||||||    
T  4263 ttctcaccttctctttgcagacgattgttttcttttctttagagcttgtgaacgtgcggctgtttgtatgaaaaatattttggctacttatgaagaagct 4164  T
Q  454 tcgaggcaagctattaa 470  Q
    ||| ||||||| |||||    
T  4163 tcggggcaagccattaa 4147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0577; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 7 - 133
Target Start/End: Complemental strand, 4600 - 4474
Alignment:
Q  7 gaaggcaatagctaaaggaaagaaaagtgaagtttctcttaagttggatattagtaaatcttatgacaggttagattagaagtatttgcgtgatatcatg 106  Q
    ||||||||  |||||||||||||   | || ||| | ||||||||||||||||||||| ||||||| || ||||||| | | ||  | || |||||||||    
T  4600 gaaggcaaaggctaaaggaaagagtggagatgttacacttaagttggatattagtaaagcttatgatagattagattgggattacctacgagatatcatg 4501  T
Q  107 ggtcaaacgggtttctcatcttgatgg 133  Q
      ||||| ||||||||| ||| |||||    
T  4500 aatcaaatgggtttctcctctcgatgg 4474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 45; Significance: 2e-16; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 98 - 413
Target Start/End: Complemental strand, 27454804 - 27454488
Alignment:
Q  98 gatatcatgggtcaaacgggtttctcatcttgatggattaacgggatcatgcttcgtgctgagacggtggactatt-ggtctatgtaaatggagcaactg 196  Q
    |||||||||  ||||| ||||||||||||| ||||| ||||| |||| |||||| ||| ||||||||| || || | |||||  || ||||||||| | |    
T  27454804 gatatcatgattcaaatgggtttctcatctcgatgggttaactggattatgctttgtgttgagacggttgattactcggtcttggttaatggagcatcgg 27454705  T
Q  197 taggacctattatgttgggtcgtggttttcgatagggtgatcctctttcaccctaccttttcattatttgtgttgaaggtttatccttccttgttcacga 296  Q
    | || |||||| |    ||  ||||  ||||  |||||||||| |||||||| ||  | ||||| ||| ||||||||||| | |||| |||| ||   ||    
T  27454704 tgggtcctattgtaccagggtgtggccttcgtcagggtgatcccctttcaccttatttgttcatcattcgtgttgaaggtctttcctcccttattagtga 27454605  T
Q  297 agttgatcgtcgaaatgatattagatgtatcatgatttgcacgggtgcacccgttacttctcacattctcttcacagacgattgttttctattttttgga 396  Q
    |||||| ||||| ||||| |||| |  ||  ||||| ||||| | |||||| |||| ||||||  ||||||||  ||||||||||||||| || ||| ||    
T  27454604 agttgaacgtcgtaatgacattaaagatactatgatatgcacagatgcaccagttatttctcatcttctcttcgtagacgattgttttcttttctttaga 27454505  T
Q  397 gcatgtgaaggtgaggc 413  Q
    || |||||| |||||||    
T  27454504 gcttgtgaacgtgaggc 27454488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 203 - 276
Target Start/End: Complemental strand, 14492741 - 14492668
Alignment:
Q  203 ctattatgttgggtcgtggttttcgatagggtgatcctctttcaccctaccttttcattatttgtgttgaaggt 276  Q
    ||||| ||| |||||||||| ||||  |  |||||||||| ||||| |||||||| ||||||||||||||||||    
T  14492741 ctattgtgtcgggtcgtggtcttcgtcaaagtgatcctctctcaccttacctttttattatttgtgttgaaggt 14492668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 44 - 81
Target Start/End: Complemental strand, 14492896 - 14492859
Alignment:
Q  44 cttaagttggatattagtaaatcttatgacaggttaga 81  Q
    ||||||||||||||||||||| | ||||||||||||||    
T  14492896 cttaagttggatattagtaaaccatatgacaggttaga 14492859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 38; Significance: 0.000000000003; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 44 - 165
Target Start/End: Original strand, 26706015 - 26706136
Alignment:
Q  44 cttaagttggatattagtaaatcttatgacaggttagattagaagtatttgcgtgatatcatgggtcaaacgggtttctcatcttgatggattaacggga 143  Q
    |||||||| || ||||||||| ||||||| |||||||||| | | ||| | |  |||||||||  ||||| ||||||||||||| ||||| ||| | |||    
T  26706015 cttaagttcgaaattagtaaagcttatgataggttagattgggactatctacaagatatcatgattcaaatgggtttctcatctcgatgggttagctgga 26706114  T
Q  144 tcatgcttcgtgctgagacggt 165  Q
    | |||||| ||| |||||||||    
T  26706115 ttatgctttgtgttgagacggt 26706136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 230 - 470
Target Start/End: Complemental strand, 32284952 - 32284712
Alignment:
Q  230 agggtgatcctctttcaccctaccttttcattatttgtgttgaaggtttatccttccttgttcacgaagttgatcgtcgaaatgatattagatgtatcat 329  Q
    ||||||||||||||||||| ||  | ||||| ||||||||||||||| | |||| |||  |||  |||||||| ||||| ||||| |||||| |||  ||    
T  32284952 agggtgatcctctttcaccttatttgttcatcatttgtgttgaaggtctttcctccctaattcgtgaagttgaacgtcgcaatgacattagaggtactat 32284853  T
Q  330 gatttgcacgggtgcacccgttacttctcacattctcttcacagacgattgttttctattttttggagcatgtgaaggtgaggcggttgttatggaatat 429  Q
    ||| |||||   |||||| |||| |||||| ||| ||||  || | ||||| ||||| || |||  ||| |||||| ||||||  |||  |||| |  ||    
T  32284852 gatatgcacatatgcaccagttatttctcatattatctttgcaaatgattgctttcttttctttaaagcttgtgaacgtgaggatgtttgtatgaagaat 32284753  T
Q  430 atattggttgtttatgaagaagcttcgaggcaagctattaa 470  Q
    || |||| |  |||||||||||||||| |||| || |||||    
T  32284752 attttggctacttatgaagaagcttcggggcaggccattaa 32284712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 342 - 386
Target Start/End: Original strand, 10998098 - 10998142
Alignment:
Q  342 tgcacccgttacttctcacattctcttcacagacgattgttttct 386  Q
    |||||| |||| |||||||||||||||  ||||||||||||||||    
T  10998098 tgcaccagttatttctcacattctctttgcagacgattgttttct 10998142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 38; Significance: 0.000000000003; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 229 - 386
Target Start/End: Original strand, 21687768 - 21687925
Alignment:
Q  229 tagggtgatcctctttcaccctaccttttcattatttgtgttgaaggtttatccttccttgttcacgaagttgatcgtcgaaatgatattagatgtatca 328  Q
    |||||||||||||| ||||| ||  | ||||| || |||||||||||| | || |||||| |||| |||| ||| ||||| ||||||||  || |||  |    
T  21687768 tagggtgatcctctctcaccttatttgttcatcatctgtgttgaaggtctttctttccttattcatgaagctgaacgtcgtaatgatatccgaggtacta 21687867  T
Q  329 tgatttgcacgggtgcacccgttacttctcacattctcttcacagacgattgttttct 386  Q
    |||| ||||| | ||||||  ||| |||||||||||||||  |||| ||||| |||||    
T  21687868 tgatatgcacagatgcaccaattatttctcacattctctttgcagatgattgctttct 21687925  T

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Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 7 - 127
Target Start/End: Complemental strand, 51194283 - 51194163
Alignment:
Q  7 gaaggcaatagctaaaggaaagaaaagtgaagtttctcttaagttggatattagtaaatcttatgacaggttagattagaagtatttgcgtgatatcatg 106  Q
    ||||||||  |||||||||||||   | || ||| | ||||||||||| ||||||||| ||||||| ||  |||||| ||| ||| | || |||||||||    
T  51194283 gaaggcaaaggctaaaggaaagagtggggatgttgcacttaagttggacattagtaaagcttatgatagactagattggaattatctacgagatatcatg 51194184  T
Q  107 ggtcaaacgggtttctcatct 127  Q
      ||||| |||||||||||||    
T  51194183 attcaaatgggtttctcatct 51194163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 232 - 368
Target Start/End: Complemental strand, 51194057 - 51193921
Alignment:
Q  232 ggtgatcctctttcaccctaccttttcattatttgtgttgaaggtttatccttccttgttcacgaagttgatcgtcgaaatgatattagatgtatcatga 331  Q
    ||||||||||||||||| ||  | ||||| ||||||||||||||| | |||| |||  |||  |||| ||| ||||| ||||| |||||| |||  ||||    
T  51194057 ggtgatcctctttcaccttatttgttcatcatttgtgttgaaggtctttcctccctaattcgtgaagctgaacgtcgcaatgacattagaggtactatga 51193958  T
Q  332 tttgcacgggtgcacccgttacttctcacattctctt 368  Q
    | ||||| | ||||||  ||| ||||||  |||||||    
T  51193957 tatgcacagatgcaccatttatttctcatcttctctt 51193921  T

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Target: scaffold0004 (Bit Score: 35; Significance: 0.0000000002; HSPs: 2)
Name: scaffold0004
Description:

Target: scaffold0004; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 230 - 412
Target Start/End: Original strand, 214415 - 214597
Alignment:
Q  230 agggtgatcctctttcaccctaccttttcattatttgtgttgaaggtttatccttccttgttcacgaagttgatcgtcgaaatgatattagatgtatcat 329  Q
    |||||||||| |||||||| ||  | ||||| ||||||| ||||||||| |||| |||| |||  |||| ||| ||||| ||||| ||||||  ||  ||    
T  214415 agggtgatcccctttcaccttatttgttcatcatttgtgctgaaggtttttcctcccttattcgtgaagctgaacgtcgtaatgacattagagttactat 214514  T
Q  330 gatttgcacgggtgcacccgttacttctcacattctcttcacagacgattgttttctattttttggagcatgtgaaggtgagg 412  Q
    ||| |||||   ||||||||||| ||||||  |||||||   ||||||||  ||||| || ||| |||| |||||| ||||||    
T  214515 gatatgcacatatgcacccgttatttctcatcttctctttgtagacgatttctttcttttctttagagcttgtgaacgtgagg 214597  T

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Target: scaffold0004; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 7 - 160
Target Start/End: Original strand, 214191 - 214344
Alignment:
Q  7 gaaggcaatagctaaaggaaagaaaagtgaagtttctcttaagttggatattagtaaatcttatgacaggttagattagaagtatttgcgtgatatcatg 106  Q
    ||||||||  |||||||||||||   | || ||| | ||||| ||||| || |||||| ||||||| ||  |||||| | | ||| | || |||||||||    
T  214191 gaaggcaaaggctaaaggaaagagtggggatgttgcacttaaattggacatcagtaaagcttatgatagactagattgggattatctacgagatatcatg 214290  T
Q  107 ggtcaaacgggtttctcatcttgatggattaacgggatcatgcttcgtgctgag 160  Q
      ||||| ||||||||||||| ||||||||| | |||| |||||| ||| ||||    
T  214291 cttcaaatgggtttctcatctcgatggattagctggattatgctttgtgttgag 214344  T

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Target: chr6 (Bit Score: 34; Significance: 0.0000000007; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 44 - 165
Target Start/End: Original strand, 7605959 - 7606080
Alignment:
Q  44 cttaagttggatattagtaaatcttatgacaggttagattagaagtatttgcgtgatatcatgggtcaaacgggtttctcatcttgatggattaacggga 143  Q
    ||||||||||| ||||||||| ||||||| ||  |||||| | | ||| | || |||||||||  ||||| ||||||||||||| ||||| ||| | | |    
T  7605959 cttaagttggacattagtaaagcttatgatagactagattgggattatctacgagatatcatgattcaaatgggtttctcatctcgatgggttagctgaa 7606058  T
Q  144 tcatgcttcgtgctgagacggt 165  Q
    | |||||| ||| |||||||||    
T  7606059 ttatgctttgtgttgagacggt 7606080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 354 - 470
Target Start/End: Original strand, 32955514 - 32955630
Alignment:
Q  354 ttctcacattctcttcacagacgattgttttctattttttggagcatgtgaaggtgaggcggttgttatggaatatatattggttgtttatgaagaagct 453  Q
    ||||||| |||||||  |||||||||||||||| || ||| |||| |||||  ||||||| |||  |||| || |||| |||  |  |||||||||||||    
T  32955514 ttctcaccttctctttgcagacgattgttttctcttctttagagcctgtgagagtgaggctgtttgtatgaaaaatattttgactacttatgaagaagct 32955613  T
Q  454 tcgaggcaagctattaa 470  Q
    ||||| ||||| |||||    
T  32955614 tcgagtcaagccattaa 32955630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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