View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4971-Insertion-1 (Length: 994)
Name: NF4971-Insertion-1
Description: NF4971
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4971-Insertion-1 |
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Alignment Details
Target: chr2 (Bit Score: 601; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 601; E-Value: 0
Query Start/End: Original strand, 7 - 697
Target Start/End: Original strand, 45364038 - 45364723
Alignment:
| Q |
7 |
aaaaactatctgatttgtgccattggttggtaaaatctagaaaagcacaagtctatccacttgtgtattgtgattttaactcttactcttacacttagtg |
106 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||| |
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| T |
45364038 |
aaaaactatctgatttgtgccattggttggtaaaatctagaaaagcacaagtctatccacttgtgaattgtgattttaactcttactcttacacttggtg |
45364137 |
T |
|
| Q |
107 |
ttctttttcagctataaatagactacacttcacaacaagatggaagtcaaacttcttagatcaaatgatgtcataatgtctcgtcataaatgatgtttaa |
206 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45364138 |
ttctttttcagctataaatagactacacttcacaacaagatggaagtcaaacttcttagatcaaatgatgtcataatgtctcgtcataaatgatgtttaa |
45364237 |
T |
|
| Q |
207 |
tgatagatcaaataaatctaaatcattcttacacaaaaaggctaggagataagcatacaagaagatcacaatcattcttctacaaggtatcacgagcagt |
306 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
45364238 |
tgatagatcaaataaatctaaatcattcttacacaaaaaggctaggagataagcatacaagaagatcacaatcattcttctacaaggcatcacgagcagt |
45364337 |
T |
|
| Q |
307 |
cgagcaactattcggcaagttattgcatcagcattcagcaagtgatgatactccaaattccgaggcagatatcttgtaattatgaaacataaagaattac |
406 |
Q |
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|||||| |||||||||||| |||||||||||||||||||||||||||||| ||| |||||||||||||||||| |||||||||||||||||||||||| |
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| T |
45364338 |
cgagcagctattcggcaag---ttgcatcagcattcagcaagtgatgatacttcaagttccgaggcagatatcttataattatgaaacataaagaattac |
45364434 |
T |
|
| Q |
407 |
ttaatatgctagctggcacacnnnnnnnntatgcaaagtgatctggatcagagccctcacaaaccttttgtatctgggattggtttgctctccgttccag |
506 |
Q |
| |
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| T |
45364435 |
ttaatatgctagctggcacacaaaaaaa--atgcaaagtgatctggatcagagccctcacaaaccttttgtatctgggattggtttgctctccgttccag |
45364532 |
T |
|
| Q |
507 |
ctcctccaggtcgatctcttttccaatgacaagtttctctatggcttttatctagtaaagagagacatatatcattttagcttagggtgacagaaaaaat |
606 |
Q |
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|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
45364533 |
ctcctccaggtcgatctcttttccaatgacgagtttctctatggcttttatctagtaaagagagacgtatatcattttagcttagggtgacagaaaaaat |
45364632 |
T |
|
| Q |
607 |
tggtgctttgctctattgtagaatcttctcacctcatcaggagaagcatcaaatcgagaagcaaggatataagttgtgcttccagagatgc |
697 |
Q |
| |
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| T |
45364633 |
tggtgctttgctctattgtagaatcttctcacctcatcaggagaagcatcaaatcgagcagcaaggatataaattgtgcttccagagatgc |
45364723 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 281; E-Value: 1e-157
Query Start/End: Original strand, 694 - 994
Target Start/End: Original strand, 45364762 - 45365062
Alignment:
| Q |
694 |
atgctgaaattagcaactctaattcgaaataggaaccacaacaggttaaataacaatacgtaattacatgtttggaccctgagtagttgtaaacgagctc |
793 |
Q |
| |
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|||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45364762 |
atgctgaaattagcaactctaatttgaaatcggaaccacaacaggttaaataacaatacgtaattacatgtttggaccctgagtagttgtaaacgagctc |
45364861 |
T |
|
| Q |
794 |
tgactgaagagtgtgtgtggtcaaagagtcttgcgacttggctacaagtgtcttgtgtgcagctgctataacagggaaaatatctggaatctggtgcagt |
893 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
45364862 |
tgactgaagagtgtgtgtggtcaaagagtcttgcgacttggctacaagtgtcttgtgtgcagctgctataacagggaaaatatatggaatctggtgcagt |
45364961 |
T |
|
| Q |
894 |
tgagaacagtggtaacatcagaaagaagcaaaagtattgtatacattcatagttaataatataagtaccggcatcactgcgaacttctccttaaaaacat |
993 |
Q |
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| T |
45364962 |
tcagaacagtgggaacatcagaaagaagcaaaagtattgtatacattcatagttaataatataagtaccggcatcactgcgaacttctccttaaaaacat |
45365061 |
T |
|
| Q |
994 |
a |
994 |
Q |
| |
|
| |
|
|
| T |
45365062 |
a |
45365062 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 192; Significance: 1e-104; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 141 - 697
Target Start/End: Original strand, 42282511 - 42283043
Alignment:
| Q |
141 |
acaagatggaagtcaaacttcttagatcaaa-tgatgtcataatgtctcgtcataaatgatgtttaatgatagatcaaataaatctaaatcattcttaca |
239 |
Q |
| |
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|||||||||||||||| |||| || |||||| ||||| |||||| |||| |||||| | ||||||||||| ||||||| | |||||||||||| |||||| |
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| T |
42282511 |
acaagatggaagtcaa-cttcatatatcaaaatgatgccataatatctcatcataattaatgtttaatgacagatcaactcaatctaaatcatccttaca |
42282609 |
T |
|
| Q |
240 |
caaaaaggctaggagataagcatacaagaagatcacaatcattcttctacaaggtatcacgagcagtcgagcaactattcggcaagttattgcatcagca |
339 |
Q |
| |
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||| ||||||||||| ||| |||||||| |||||| |||||||||||||||| | ||||||||||| |||||||||||||||||||||| |
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|
| T |
42282610 |
caataaggctaggagctaaacatacaagcagatcagaatcattcttctacaaagcatcacgagcag--------ctattcggcaagttattgcatc---- |
42282697 |
T |
|
| Q |
340 |
ttcagcaagtgatgatactccaaattccgaggcagatatcttgtaattatgaaacataaagaattacttaatatgctagctggcacacnnnnnnnntatg |
439 |
Q |
| |
|
|||| |||||||||| ||||| |||| |||||||||||||||||| |||||||||| ||||||| |||||||||| ||||||| || |
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| T |
42282698 |
ttca---agtgatgatattccaagttccaaggcagatatcttgtaatgctgaaacataacaaattactgaatatgctagttggcacaaaaagg-----tg |
42282789 |
T |
|
| Q |
440 |
caaagtgatctggatcagagccctcacaaaccttttgtatctgggattggtttgctctccgttccagctcctccaggtcgatctcttttccaatgacaag |
539 |
Q |
| |
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|||||| || || | |||||| |||||||||||||||||||| |||||||||||| || ||||||||||||||| ||||||||||||||||| || |
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| T |
42282790 |
caaagtaatatgaa----agccctgacaaaccttttgtatctggggcaggtttgctctccctttcagctcctccaggtcaatctcttttccaatgacgag |
42282885 |
T |
|
| Q |
540 |
tttctctatggcttttatctagtaaagagagacatatatcattttagcttagg---gtgacagaaaaaattggtgctttgctctattgtagaatcttctc |
636 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||| ||| | ||| | ||||||| ||||| | | |||||||||||||||| |
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| T |
42282886 |
tttctctatggcttttatctagtaaagagagacatatatcattttag-ttatgtaagtggc--aaaaaataggtgccatatttaattgtagaatcttctc |
42282982 |
T |
|
| Q |
637 |
acctcatcaggagaagcatcaaatcgagaagcaaggatataagttgtgcttccagagatgc |
697 |
Q |
| |
|
||||||||||||| |||||||||||||| |||||||||||| ||||||||| ||||||||| |
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|
| T |
42282983 |
acctcatcaggagtagcatcaaatcgagcagcaaggatataggttgtgctttcagagatgc |
42283043 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 171; E-Value: 3e-91
Query Start/End: Original strand, 694 - 928
Target Start/End: Original strand, 42283082 - 42283316
Alignment:
| Q |
694 |
atgctgaaattagcaactctaattcgaaataggaaccacaacaggttaaataacaatacgtaattacatgtttggaccctgagtagttgtaaacgagctc |
793 |
Q |
| |
|
|||||||||||||||||||||||| ||||| |||||| ||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||| |
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|
| T |
42283082 |
atgctgaaattagcaactctaattggaaatgtgaaccataacaggttaaatagaaatacataattacatgtttggaccctgagtagttgtaaacgagctc |
42283181 |
T |
|
| Q |
794 |
tgactgaagagtgtgtgtggtcaaagagtcttgcgacttggctacaagtgtcttgtgtgcagctgctataacagggaaaatatctggaatctggtgcagt |
893 |
Q |
| |
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|| ||||||||| |||||||||||||||| | ||||||| ||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||| |
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| T |
42283182 |
ggaatgaagagtgcgtgtggtcaaagagtcccgtgacttggttacaagtgtcttgtgagcagctgctagaacagggaaaatatctggaatctggtgcagt |
42283281 |
T |
|
| Q |
894 |
tgagaacagtggtaacatcagaaagaagcaaaagt |
928 |
Q |
| |
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||||||||||||||||||||||||||||||||||| |
|
|
| T |
42283282 |
tgagaacagtggtaacatcagaaagaagcaaaagt |
42283316 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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