View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4971_high_2 (Length: 373)

Name: NF4971_high_2
Description: NF4971
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4971_high_2
NF4971_high_2
[»] chr7 (3 HSPs)
chr7 (1-350)||(35939873-35940222)
chr7 (239-332)||(35969113-35969206)
chr7 (239-332)||(35990525-35990618)
[»] chr5 (1 HSPs)
chr5 (1-350)||(20333220-20333569)
[»] chr4 (3 HSPs)
chr4 (1-350)||(25429215-25429564)
chr4 (194-340)||(15538162-15538308)
chr4 (239-319)||(16938485-16938565)
[»] chr1 (2 HSPs)
chr1 (1-347)||(49211782-49212128)
chr1 (209-295)||(6838520-6838606)
[»] chr6 (2 HSPs)
chr6 (1-270)||(16713165-16713434)
chr6 (239-353)||(26254702-26254816)
[»] chr8 (2 HSPs)
chr8 (194-340)||(18011890-18012036)
chr8 (239-353)||(43442237-43442351)


Alignment Details
Target: chr7 (Bit Score: 314; Significance: 1e-177; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 314; E-Value: 1e-177
Query Start/End: Original strand, 1 - 350
Target Start/End: Complemental strand, 35940222 - 35939873
Alignment:
Q  1 caccatttccaattctgacccatttgatttcggtgtcctccagtttcttgaacaaagctttatcgtaggtcatgtgattagtgcatccactatcaatcag 100  Q
    ||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  35940222 caccatttccaattctgacccatttgatttcggtgtcctccagattcttgaataaagctttatcgtaggtcatgtgattagtgcatccactatcaatcag 35940123  T
Q  101 ccaagattcacatgatttgctgctggaaaaacatgttgcaacaaagagatggtcttcctcctcttgctgtacattttctgcttcaactgcaacttgttgg 200  Q
    |||||||||||||||  ||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||    
T  35940122 ccaagattcacatgaactgctgctggaaaaacatgttgcaacaaagagatagttttcctcctcttgctgtacattttctgcttcaactgcaacttgttgg 35940023  T
Q  201 atttttgctttacaaatcacatcttcatgacccatttcattgcacttgctgcactttgcatctggccttctccaacatttaaatggtgggtgacccattt 300  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35940022 attttttctttacaaatcacatcttcatgacccatttcattgcacttgctgcactttgcatctggccttctccaacatttaaatggtgggtgacccattt 35939923  T
Q  301 ttccgcaatgttcacaaggtgggaaacttttcttcttaccctttcctttg 350  Q
    ||||||| |||||||||||||| |||||||||||||||||||||||||||    
T  35939922 ttccgcagtgttcacaaggtggaaaacttttcttcttaccctttcctttg 35939873  T

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Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 239 - 332
Target Start/End: Original strand, 35969113 - 35969206
Alignment:
Q  239 attgcacttgctgcactttgcatctggccttctccaacatttaaatggtgggtgacccatttttccgcaatgttcacaaggtgggaaacttttc 332  Q
    |||||| ||| |||| ||||||||||| ||| |||||||| | ||||| || ||||||| |||||| || || |||||||| || ||| |||||    
T  35969113 attgcagttgttgcattttgcatctggtcttttccaacatctgaatggcggatgacccaattttccacagtgctcacaaggaggaaaatttttc 35969206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 239 - 332
Target Start/End: Original strand, 35990525 - 35990618
Alignment:
Q  239 attgcacttgctgcactttgcatctggccttctccaacatttaaatggtgggtgacccatttttccgcaatgttcacaaggtgggaaacttttc 332  Q
    |||||| ||| |||| ||||||||||| ||| |||||||| | ||||| || ||||||| |||||| || || |||||||| || ||| |||||    
T  35990525 attgcagttgttgcattttgcatctggtcttttccaacatctgaatggcggatgacccaattttccacagtgctcacaaggaggaaaatttttc 35990618  T

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Target: chr5 (Bit Score: 310; Significance: 1e-174; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 310; E-Value: 1e-174
Query Start/End: Original strand, 1 - 350
Target Start/End: Original strand, 20333220 - 20333569
Alignment:
Q  1 caccatttccaattctgacccatttgatttcggtgtcctccagtttcttgaacaaagctttatcgtaggtcatgtgattagtgcatccactatcaatcag 100  Q
    ||||||||||||||||||||||||||||||| ||||||||||  |||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  20333220 caccatttccaattctgacccatttgatttcagtgtcctccaaattcttgaataaagctttatcgtaggtcatgtgattagtgcatccactatcaatcag 20333319  T
Q  101 ccaagattcacatgatttgctgctggaaaaacatgttgcaacaaagagatggtcttcctcctcttgctgtacattttctgcttcaactgcaacttgttgg 200  Q
    |||||||||||||||  ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  20333320 ccaagattcacatgaactgctgctggaaaaacatgttgcaacaaagagatagtcttcctcctcttgctgtacattttctgcttcaactgcaacttgttgg 20333419  T
Q  201 atttttgctttacaaatcacatcttcatgacccatttcattgcacttgctgcactttgcatctggccttctccaacatttaaatggtgggtgacccattt 300  Q
    |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  20333420 atttttgctttacaaatcacatcttcatgacctatttcattgcacttgctgcactttgcatctggccttctccaacatttaaatggtgggtgacccattt 20333519  T
Q  301 ttccgcaatgttcacaaggtgggaaacttttcttcttaccctttcctttg 350  Q
    ||||||| |||||||||||||| |||||||||||||||||||||||||||    
T  20333520 ttccgcagtgttcacaaggtggaaaacttttcttcttaccctttcctttg 20333569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 310; Significance: 1e-174; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 310; E-Value: 1e-174
Query Start/End: Original strand, 1 - 350
Target Start/End: Complemental strand, 25429564 - 25429215
Alignment:
Q  1 caccatttccaattctgacccatttgatttcggtgtcctccagtttcttgaacaaagctttatcgtaggtcatgtgattagtgcatccactatcaatcag 100  Q
    ||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  25429564 caccatttccaattctgacccatttgatttcggtgtcctccagattcttgaataaagctttatcgtaggtcatgtgattagtgcatccactatcaatcag 25429465  T
Q  101 ccaagattcacatgatttgctgctggaaaaacatgttgcaacaaagagatggtcttcctcctcttgctgtacattttctgcttcaactgcaacttgttgg 200  Q
    |||||||||||||||  ||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||    
T  25429464 ccaagattcacatgaactgctgctggaaaaacatgttgcaacaaagagatagttttcctcctcttgctgtacattttctgcttcaactgcaacttgttgg 25429365  T
Q  201 atttttgctttacaaatcacatcttcatgacccatttcattgcacttgctgcactttgcatctggccttctccaacatttaaatggtgggtgacccattt 300  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  25429364 attttttctttacaaatcacatcttcatgacccatttcattgcacttgctgcactttgcatctggccttctccaacatttaaatggtgggtgacccattt 25429265  T
Q  301 ttccgcaatgttcacaaggtgggaaacttttcttcttaccctttcctttg 350  Q
    ||||||| |||||||||||||||||||||||||||||| | |||||||||    
T  25429264 ttccgcagtgttcacaaggtgggaaacttttcttcttatcatttcctttg 25429215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 194 - 340
Target Start/End: Complemental strand, 15538308 - 15538162
Alignment:
Q  194 ttgttggatttttgctttacaaatcacatcttcatgacccatttcattgcacttgctgcactttgcatctggccttctccaacatttaaatggtgggtga 293  Q
    |||||| | |||| |||| ||||||||| ||| ||| || |  | ||||||||||||||||||||| |  || |||||||||||  | || ||||| |||    
T  15538308 ttgttgaaattttcctttgcaaatcacaactttatgtccaagctgattgcacttgctgcactttgcgttcggtcttctccaacagctgaacggtggatga 15538209  T
Q  294 cccatttttccgcaatgttcacaaggtgggaaacttttcttcttacc 340  Q
    |||||||| || || || || ||||||||| || ||||||| |||||    
T  15538208 cccattttaccacagtgctcgcaaggtgggtaatttttctttttacc 15538162  T

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Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 239 - 319
Target Start/End: Complemental strand, 16938565 - 16938485
Alignment:
Q  239 attgcacttgctgcactttgcatctggccttctccaacatttaaatggtgggtgacccatttttccgcaatgttcacaagg 319  Q
    |||| ||||| |||| ||||||||||| ||| |||||||| | ||||| || ||||||| |||||| ||||| ||||||||    
T  16938565 attgtacttgttgcattttgcatctggtcttttccaacatctgaatggcggatgacccaattttccacaatgctcacaagg 16938485  T

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Target: chr1 (Bit Score: 307; Significance: 1e-173; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 307; E-Value: 1e-173
Query Start/End: Original strand, 1 - 347
Target Start/End: Complemental strand, 49212128 - 49211782
Alignment:
Q  1 caccatttccaattctgacccatttgatttcggtgtcctccagtttcttgaacaaagctttatcgtaggtcatgtgattagtgcatccactatcaatcag 100  Q
    |||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||    
T  49212128 caccatttccaattctgacccatttgatttcggtgtcctctagtttcttgaacaaagttttatcgtaggtcatgtgattagtccatccactatcaatcag 49212029  T
Q  101 ccaagattcacatgatttgctgctggaaaaacatgttgcaacaaagagatggtcttcctcctcttgctgtacattttctgcttcaactgcaacttgttgg 200  Q
    ||||||||||||||| ||||||||| ||||||||||| |||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||    
T  49212028 ccaagattcacatgaattgctgctgtaaaaacatgtttcaacaaagagatagtcttcctcctcttgttgtacattttctgcttcaactgcaacttgttgg 49211929  T
Q  201 atttttgctttacaaatcacatcttcatgacccatttcattgcacttgctgcactttgcatctggccttctccaacatttaaatggtgggtgacccattt 300  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  49211928 atttttgctttacaaatcacatcttcatgacccatttcattgcacttgttgcactttgcatctggccttctccaacatttaaatggtgggtgacccattt 49211829  T
Q  301 ttccgcaatgttcacaaggtgggaaacttttcttcttaccctttcct 347  Q
    ||||||| |||||||||||||||||||||||||||||||||||||||    
T  49211828 ttccgcagtgttcacaaggtgggaaacttttcttcttaccctttcct 49211782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 209 - 295
Target Start/End: Original strand, 6838520 - 6838606
Alignment:
Q  209 tttacaaatcacatcttcatgacccatttcattgcacttgctgcactttgcatctggccttctccaacatttaaatggtgggtgacc 295  Q
    ||||||||| ||| ||||||| ||||||| ||| |||||| | ||||| ||||| || |||||||||||| |||| ||||| |||||    
T  6838520 tttacaaataacagcttcatgccccatttgattacacttggtacacttagcatcaggtcttctccaacatctaaagggtggatgacc 6838606  T

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Target: chr6 (Bit Score: 214; Significance: 1e-117; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 1 - 270
Target Start/End: Original strand, 16713165 - 16713434
Alignment:
Q  1 caccatttccaattctgacccatttgatttcggtgtcctccagtttcttgaacaaagctttatcgtaggtcatgtgattagtgcatccactatcaatcag 100  Q
    |||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||    
T  16713165 caccattttcaattctgacccatttcatttcggtgtcctccagtttcttgaacaaagctttatcgtaggtcatgtgattagtgcatccactatcaattag 16713264  T
Q  101 ccaagattcacatgatttgctgctggaaaaacatgttgcaacaaagagatggtcttcctcctcttgctgtacattttctgcttcaactgcaacttgttgg 200  Q
    |||||||||||||||  |||||| ||||||||||||||||||||||| || || ||||||||||||||| |||||||| |||||||||||||||||||||    
T  16713265 ccaagattcacatgaactgctgccggaaaaacatgttgcaacaaagaaatagtgttcctcctcttgctggacattttccgcttcaactgcaacttgttgg 16713364  T
Q  201 atttttgctttacaaatcacatcttcatgacccatttcattgcacttgctgcactttgcatctggccttc 270  Q
    | ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  16713365 aattttgctatacaaatcacatcttcatgacccatttcattgcacttgctgcactttgcatctgaccttc 16713434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 239 - 353
Target Start/End: Complemental strand, 26254816 - 26254702
Alignment:
Q  239 attgcacttgctgcactttgcatctggccttctccaacatttaaatggtgggtgacccatttttccgcaatgttcacaaggtgggaaacttttcttctta 338  Q
    |||||| ||| |||| ||||||||||| ||| |||||||| | ||||| || ||||||| |||||| || || |||||||| || ||| ||||| | ||     
T  26254816 attgcagttgttgcattttgcatctggtcttttccaacatctgaatggcggatgacccaattttccacagtgctcacaaggaggaaaatttttccttttt 26254717  T
Q  339 ccctttcctttgctt 353  Q
    |||||  ||||||||    
T  26254716 cccttatctttgctt 26254702  T

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Target: chr8 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 194 - 340
Target Start/End: Complemental strand, 18012036 - 18011890
Alignment:
Q  194 ttgttggatttttgctttacaaatcacatcttcatgacccatttcattgcacttgctgcactttgcatctggccttctccaacatttaaatggtgggtga 293  Q
    |||||| | |||| |||| ||||| ||| ||||||| || |  | ||||||||||||||||||||| || || |||||||||||| | || ||||| |||    
T  18012036 ttgttgaaattttcctttgcaaatgacagcttcatgtccaagctgattgcacttgctgcactttgcgtccggtcttctccaacatctgaacggtggatga 18011937  T
Q  294 cccatttttccgcaatgttcacaaggtgggaaacttttcttcttacc 340  Q
    |||||||| || || || || ||||||||| || | ||||| |||||    
T  18011936 cccattttaccacagtgctcgcaaggtgggtaattcttctttttacc 18011890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 239 - 353
Target Start/End: Complemental strand, 43442351 - 43442237
Alignment:
Q  239 attgcacttgctgcactttgcatctggccttctccaacatttaaatggtgggtgacccatttttccgcaatgttcacaaggtgggaaacttttcttctta 338  Q
    |||||| ||| |||| ||||||||||| ||| |||||||| | ||||| || ||||||| |||||| || || |||||||| || ||| ||||| | ||     
T  43442351 attgcagttgttgcattttgcatctggtcttttccaacatctgaatggcggatgacccaattttccacagtgctcacaaggaggaaaatttttccttttt 43442252  T
Q  339 ccctttcctttgctt 353  Q
    |||||  ||||||||    
T  43442251 cccttatctttgctt 43442237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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