View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4971_high_3 (Length: 339)
Name: NF4971_high_3
Description: NF4971
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4971_high_3 |
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Alignment Details
Target: chr4 (Bit Score: 311; Significance: 1e-175; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 311; E-Value: 1e-175
Query Start/End: Original strand, 1 - 327
Target Start/End: Complemental strand, 27775074 - 27774748
Alignment:
| Q |
1 |
ttgcttatcagacatcatttatcttttacatttttatcttttgacatgttaaatttagaatacatctttattttccaaccaccaggataactgcggctgt |
100 |
Q |
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| T |
27775074 |
ttgcttatcagacatcatttatcttttacatttttatcttttgacatgttaaatttagaatacatctttattttccaaccaccaggataactacggctgt |
27774975 |
T |
|
| Q |
101 |
tgtttatcttctttgttttcaattatatcaaacagacatgctattgttgttttttactacaaattataacatttgcatctactctaagatatttttcctt |
200 |
Q |
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| T |
27774974 |
tgtttatcttctttgttttcaattatatcaaacagacatgctattgttgttttttactacaaatgataacatttgcatctactctaagatatttttcctt |
27774875 |
T |
|
| Q |
201 |
acattgatttttatattgcagatgctgagggatgactcccttcccgtttgcttacctgagaaagtacatgatgtgaaattgggcgactcagctgaggaga |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27774874 |
acattgatttttatattgcagatgctgagggatgactcccttcctgtttgcttacctgagaaagtacatgatgtgaaattgggcgactcagctgaggaga |
27774775 |
T |
|
| Q |
301 |
gtactgctactcctgcaaccgatgatg |
327 |
Q |
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|||||||||||||||||||| |||||| |
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| T |
27774774 |
gtactgctactcctgcaaccaatgatg |
27774748 |
T |
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