View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4971_high_4 (Length: 240)
Name: NF4971_high_4
Description: NF4971
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4971_high_4 |
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Alignment Details
Target: chr7 (Bit Score: 187; Significance: 1e-101; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 4 - 222
Target Start/End: Original strand, 35940278 - 35940496
Alignment:
| Q |
4 |
gaaaaatctcactgatgttctatatgtgtctaaaattaatcagaacttgcttagtgttggacaactacttgaaaaagggttcaaagttatatttgaagat |
103 |
Q |
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|||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
35940278 |
gaaaaatctcactgatgttctatatgtgactgaaattaatcagaacttgcttagtgttggacaactacttgaaaaagggttcaaagttatttttgaagat |
35940377 |
T |
|
| Q |
104 |
aagaattgtataattaatgacccaacatgccaagaaatgttcaaagtaaaaatgaagagcaggagtttttcatttgatccaatgaaggaggagcaatctg |
203 |
Q |
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||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
35940378 |
aagaattgtataattaaggacccaacaggccaagaaatgttcaaagtaaaaatgaagagcaagagtttttcatttgatccaatgaaggaggagcaatctg |
35940477 |
T |
|
| Q |
204 |
ctcttccagtcacaattag |
222 |
Q |
| |
|
|||||| ||||||||||| |
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|
| T |
35940478 |
ctcttctggtcacaattag |
35940496 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 167 - 199
Target Start/End: Original strand, 29869105 - 29869137
Alignment:
| Q |
167 |
agtttttcatttgatccaatgaaggaggagcaa |
199 |
Q |
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||||||||||||||||||||||||||||||||| |
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|
| T |
29869105 |
agtttttcatttgatccaatgaaggaggagcaa |
29869137 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 183; Significance: 4e-99; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 183; E-Value: 4e-99
Query Start/End: Original strand, 4 - 222
Target Start/End: Complemental strand, 20333164 - 20332946
Alignment:
| Q |
4 |
gaaaaatctcactgatgttctatatgtgtctaaaattaatcagaacttgcttagtgttggacaactacttgaaaaagggttcaaagttatatttgaagat |
103 |
Q |
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||||||| |||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||| |
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| T |
20333164 |
gaaaaatttcactgatgttctatatgtgcctgaaattaatcagaacttgcttagtgttggacaactacttgaaaaagggttcaaagttatttttaaagat |
20333065 |
T |
|
| Q |
104 |
aagaattgtataattaatgacccaacatgccaagaaatgttcaaagtaaaaatgaagagcaggagtttttcatttgatccaatgaaggaggagcaatctg |
203 |
Q |
| |
|
||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||| |
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|
| T |
20333064 |
aagaattgtataattaaggacccaacaggccaagaaatgttcaaagtaaaaatgaagagcaagaatttttcatttgatccaatgaaggaggagcaatctg |
20332965 |
T |
|
| Q |
204 |
ctcttccagtcacaattag |
222 |
Q |
| |
|
||||||||||||||||||| |
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|
| T |
20332964 |
ctcttccagtcacaattag |
20332946 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 183; Significance: 4e-99; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 183; E-Value: 4e-99
Query Start/End: Original strand, 4 - 222
Target Start/End: Original strand, 25429620 - 25429838
Alignment:
| Q |
4 |
gaaaaatctcactgatgttctatatgtgtctaaaattaatcagaacttgcttagtgttggacaactacttgaaaaagggttcaaagttatatttgaagat |
103 |
Q |
| |
|
|||||||||||||||||||||||||||| || |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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|
| T |
25429620 |
gaaaaatctcactgatgttctatatgtgcctgaaattaatcaaaacttgcttagtgttggacaactacttgaaaaagggttcaaagttatttttgaagat |
25429719 |
T |
|
| Q |
104 |
aagaattgtataattaatgacccaacatgccaagaaatgttcaaagtaaaaatgaagagcaggagtttttcatttgatccaatgaaggaggagcaatctg |
203 |
Q |
| |
|
|||||||||||| |||| || ||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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|
| T |
25429720 |
aagaattgtatagttaaggatccaacatgccaagaaatgtgcaaagtaaaaatgaagagcaagagtttttcatttgatccaatgaaggaggagcaatctg |
25429819 |
T |
|
| Q |
204 |
ctcttccagtcacaattag |
222 |
Q |
| |
|
||||||||||||||||||| |
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|
| T |
25429820 |
ctcttccagtcacaattag |
25429838 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 171; Significance: 6e-92; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 171; E-Value: 6e-92
Query Start/End: Original strand, 4 - 222
Target Start/End: Original strand, 49212184 - 49212402
Alignment:
| Q |
4 |
gaaaaatctcactgatgttctatatgtgtctaaaattaatcagaacttgcttagtgttggacaactacttgaaaaagggttcaaagttatatttgaagat |
103 |
Q |
| |
|
||||||||||||| |||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||| ||||| |
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| T |
49212184 |
gaaaaatctcactaatgttctatatgtgcctgaaattaatcagaacttgcttagtgttggacaactacttgaaaaagggttcaaagctattttttaagat |
49212283 |
T |
|
| Q |
104 |
aagaattgtataattaatgacccaacatgccaagaaatgttcaaagtaaaaatgaagagcaggagtttttcatttgatccaatgaaggaggagcaatctg |
203 |
Q |
| |
|
||||||||||||||||| ||||||| | ||||| |||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||| |
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| T |
49212284 |
aagaattgtataattaaggacccaataggccaacaaatgttcaaagtaaaaatgaagaccaagagtttttcatttgatccaatgaaggaggagcaatctg |
49212383 |
T |
|
| Q |
204 |
ctcttccagtcacaattag |
222 |
Q |
| |
|
||||||||||||||||||| |
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|
| T |
49212384 |
ctcttccagtcacaattag |
49212402 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 167 - 199
Target Start/End: Complemental strand, 20785204 - 20785172
Alignment:
| Q |
167 |
agtttttcatttgatccaatgaaggaggagcaa |
199 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |
|
|
| T |
20785204 |
agtttttcatttgatccaatgaaggaggagcaa |
20785172 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 167 - 199
Target Start/End: Original strand, 29470854 - 29470886
Alignment:
| Q |
167 |
agtttttcatttgatccaatgaaggaggagcaa |
199 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |
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|
| T |
29470854 |
agtttttcatttgatccaatgaaggaggagcaa |
29470886 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 33; Significance: 0.000000001; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 167 - 199
Target Start/End: Original strand, 19966611 - 19966643
Alignment:
| Q |
167 |
agtttttcatttgatccaatgaaggaggagcaa |
199 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |
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|
| T |
19966611 |
agtttttcatttgatccaatgaaggaggagcaa |
19966643 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 167 - 199
Target Start/End: Complemental strand, 21026385 - 21026353
Alignment:
| Q |
167 |
agtttttcatttgatccaatgaaggaggagcaa |
199 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |
|
|
| T |
21026385 |
agtttttcatttgatccaatgaaggaggagcaa |
21026353 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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