View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4971_low_1 (Length: 388)

Name: NF4971_low_1
Description: NF4971
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4971_low_1
NF4971_low_1
[»] chr3 (1 HSPs)
chr3 (20-374)||(14553463-14553819)
[»] chr5 (27 HSPs)
chr5 (90-374)||(37533453-37533739)
chr5 (90-374)||(37824248-37824534)
chr5 (90-374)||(37400333-37400619)
chr5 (91-374)||(37703021-37703306)
chr5 (90-363)||(37594688-37594963)
chr5 (90-374)||(37711977-37712263)
chr5 (90-374)||(37640225-37640511)
chr5 (90-342)||(37697172-37697426)
chr5 (110-347)||(37436087-37436326)
chr5 (161-374)||(37392484-37392699)
chr5 (20-80)||(37392337-37392397)
chr5 (21-79)||(37824617-37824675)
chr5 (20-80)||(37436428-37436488)
chr5 (273-370)||(37412962-37413059)
chr5 (20-80)||(37533821-37533881)
chr5 (20-80)||(37697508-37697568)
chr5 (20-71)||(37400191-37400242)
chr5 (20-71)||(37640602-37640653)
chr5 (20-71)||(37712354-37712405)
chr5 (22-71)||(37412657-37412706)
chr5 (20-71)||(37703398-37703449)
chr5 (22-56)||(37429486-37429520)
chr5 (20-62)||(37595063-37595105)
chr5 (295-340)||(37429119-37429164)
chr5 (150-200)||(37429261-37429311)
chr5 (287-336)||(37343272-37343321)
chr5 (90-134)||(37381856-37381900)
[»] chr4 (3 HSPs)
chr4 (90-374)||(16842397-16842683)
chr4 (287-347)||(24217460-24217520)
chr4 (20-80)||(16842255-16842315)
[»] chr8 (1 HSPs)
chr8 (285-327)||(23496081-23496123)


Alignment Details
Target: chr3 (Bit Score: 342; Significance: 0; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 342; E-Value: 0
Query Start/End: Original strand, 20 - 374
Target Start/End: Complemental strand, 14553819 - 14553463
Alignment:
Q  20 ggttcctctatctttgtggaacctcactcaactaacacatttggacctttcacaaaataaattaagctggagcatcccagatgtttgtggaaatttaatc 119  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  14553819 ggttcctctatctttgtggaacctcactcaactaacacatttggacctttcacaaaataacttaagctggagcatcccagatgtttgtggaaatttaatc 14553720  T
Q  120 aaattggaatatttataccttttctctaacaacctagcaggccaagttccatcatcactttttaatctacctcagctttcttttttatgtttatcatcta 219  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14553719 aaattggaatatttataccttttctctaacaacctagcaggccaagttccatcatcactttttaatctacctcagctttcttttttatgtttatcatcta 14553620  T
Q  220 acaaactagttgggccgattgcaattgaaatcacaaaacgttcaaaattgagc--tgtggatttaagttataacatgttaaatggaacaattccacattg 317  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||    
T  14553619 acaaactagttgggccgattgcaattgaaatcacaaaacgttcaaaattgagctatgtggatttaagttataacatgttaaatggaacaattccacattg 14553520  T
Q  318 gtgttattctttgccttcgttgttagagttatccctcagcgacaaccacctcacagg 374  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14553519 gtgttattctttgccttcgttgttagagttatccctcagcgacaaccacctcacagg 14553463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 200; Significance: 1e-109; HSPs: 27)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 90 - 374
Target Start/End: Complemental strand, 37533739 - 37533453
Alignment:
Q  90 agcatcccagatgtttgtggaaatttaatcaaattggaatatttataccttttctctaacaacctagcaggccaagttccatcatcactttttaatctac 189  Q
    ||||||||| |||||| |||||||||||||||||||||||||||||  |||| ||||||||||||| |||||||||||||||||||||||||| ||||||    
T  37533739 agcatcccaaatgtttatggaaatttaatcaaattggaatatttatcactttcctctaacaacctaacaggccaagttccatcatcactttttcatctac 37533640  T
Q  190 ctcagctttcttttttatgtttatcatctaacaaactagttgggccgattgcaattgaaatcacaaaacgttcaaaattgagc--tgtggatttaagtta 287  Q
    |||| |||||| ||||| ||||||||| |||||||||||||||||| ||| ||||||||||||||||||||||||||||||||  ||||| ||| ||| |    
T  37533639 ctcacctttctattttaggtttatcatataacaaactagttgggccaattccaattgaaatcacaaaacgttcaaaattgagctatgtgggtttgagtga 37533540  T
Q  288 taacatgttaaatggaacaattccacattggtgttattctttgccttcgttgttagagttatccctcagcgacaaccacctcacagg 374  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||| ||||||||||||||||    
T  37533539 taacatgttaaatggaacaattccacattggtgttattctttgccttcgttgttagagttacacctcagcaacaaccacctcacagg 37533453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 196; E-Value: 1e-106
Query Start/End: Original strand, 90 - 374
Target Start/End: Complemental strand, 37824534 - 37824248
Alignment:
Q  90 agcatcccagatgtttgtggaaatttaatcaaattggaatatttataccttttctctaacaacctagcaggccaagttccatcatcactttttaatctac 189  Q
    ||||||||| |||||| ||||||||||||||||||||||||||||   |||| ||||||||||||| |||||||||||||||||||||||||| ||||||    
T  37824534 agcatcccaaatgtttatggaaatttaatcaaattggaatatttagcactttcctctaacaacctaacaggccaagttccatcatcactttttcatctac 37824435  T
Q  190 ctcagctttcttttttatgtttatcatctaacaaactagttgggccgattgcaattgaaatcacaaaacgttcaaaattgag--ctgtggatttaagtta 287  Q
    |||| ||||||| ||||| |||||||||||||||||||||||| || ||| |||||||||||||||||||||||||||||||   |||||||||||| |     
T  37824434 ctcatctttcttatttatatttatcatctaacaaactagttggcccaattccaattgaaatcacaaaacgttcaaaattgagtattgtggatttaagctt 37824335  T
Q  288 taacatgttaaatggaacaattccacattggtgttattctttgccttcgttgttagagttatccctcagcgacaaccacctcacagg 374  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||   ||||||||||||||||||||||||    
T  37824334 taacatgttaaatggaacaattccacattggtgttattctttgccttcgttgttagagttgggcctcagcgacaaccacctcacagg 37824248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 172; E-Value: 2e-92
Query Start/End: Original strand, 90 - 374
Target Start/End: Original strand, 37400333 - 37400619
Alignment:
Q  90 agcatcccagatgtttgtggaaatttaatcaaattggaatatttataccttttctctaacaacctagcaggccaagttccatcatcactttttaatctac 189  Q
    |||||||||  ||||| ||||||||||||||||||||||||||||   |||| ||||||||||||| |||||||||||||||||||||||||| ||||||    
T  37400333 agcatcccaattgtttatggaaatttaatcaaattggaatatttagcactttcctctaacaacctaacaggccaagttccatcatcactttttcatctac 37400432  T
Q  190 ctcagctttcttttttatgtttatcatctaacaaactagttgggccgattgcaattgaaatcacaaaacgttcaaaattgagct--gtggatttaagtta 287  Q
    |||| ||||||  ||||| |||||||||||||||||||||||| || ||| |||||||||||||||||||||||||||||||||  |||  |||  || |    
T  37400433 ctcatctttctcatttatatttatcatctaacaaactagttggcccaattccaattgaaatcacaaaacgttcaaaattgagctatgtgtttttgggtga 37400532  T
Q  288 taacatgttaaatggaacaattccacattggtgttattctttgccttcgttgttagagttatccctcagcgacaaccacctcacagg 374  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||| ||||| | ||||||||    
T  37400533 taacatgttaaatggaacaattccacattggtgttattctttgccttcgttgttagagttgtacctcagcaacaacaatctcacagg 37400619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 171; E-Value: 1e-91
Query Start/End: Original strand, 91 - 374
Target Start/End: Complemental strand, 37703306 - 37703021
Alignment:
Q  91 gcatcccagatgtttgtggaaatttaatcaaattggaatatttataccttttctctaacaacctagcaggccaagttccatcatcactttttaatctacc 190  Q
    ||||||||  ||||| ||||||||||| |||||||||||||||||  |||| ||||||||| ||| |||||||||||||||||||||||||| |||||||    
T  37703306 gcatcccaattgtttatggaaatttaaacaaattggaatatttatcactttcctctaacaagctaacaggccaagttccatcatcactttttcatctacc 37703207  T
Q  191 tcagctttcttttttatgtttatcatctaacaaactagttgggccgattgcaattgaaatcacaaaacgttcaaaattgagc--tgtggatttaagttat 288  Q
    ||| |||| | ||||| ||||||||| |||||||||||||||||| ||| ||||||||||||||||||||||||||||||||  ||||| ||| ||  ||    
T  37703206 tcacctttttattttaggtttatcatttaacaaactagttgggccaattccaattgaaatcacaaaacgttcaaaattgagctatgtgggtttgagggat 37703107  T
Q  289 aacatgttaaatggaacaattccacattggtgttattctttgccttcgttgttagagttatccctcagcgacaaccacctcacagg 374  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||   |||| |||||||||||||||||||    
T  37703106 aacatgttaaatggaacaattccacattggtgttattctttgccttcgttgttagggttggtcctcggcgacaaccacctcacagg 37703021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 169; E-Value: 2e-90
Query Start/End: Original strand, 90 - 363
Target Start/End: Complemental strand, 37594963 - 37594688
Alignment:
Q  90 agcatcccagatgtttgtggaaatttaatcaaattggaatatttataccttttctctaacaacctagcaggccaagttccatcatcactttttaatctac 189  Q
    |||||||||  ||||| ||||||||||||||||||||||||||||   |||| || |||||||||| |||||||||||||||||||||||||| ||||||    
T  37594963 agcatcccaattgtttatggaaatttaatcaaattggaatatttagcactttcctttaacaacctaacaggccaagttccatcatcactttttcatctac 37594864  T
Q  190 ctcagctttcttttttatgtttatcatctaacaaactagttgggccgattgcaattgaaatcacaaaacgttcaaaattgagc--tgtggatttaagtta 287  Q
    |||| |||||| ||||| ||||||||| |||||||||||||||||| ||| ||||||||||||||||||||||||||||||||  ||||| ||| ||  |    
T  37594863 ctcacctttctattttaggtttatcatataacaaactagttgggccaattccaattgaaatcacaaaacgttcaaaattgagctatgtgggtttgaggga 37594764  T
Q  288 taacatgttaaatggaacaattccacattggtgttattctttgccttcgttgttagagttatccctcagcgacaac 363  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || | ||||||| |||||    
T  37594763 taacatgttaaatggaacaattccacattggtgttattctttgccttcgttgttagaattgtacctcagcaacaac 37594688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 156; E-Value: 9e-83
Query Start/End: Original strand, 90 - 374
Target Start/End: Complemental strand, 37712263 - 37711977
Alignment:
Q  90 agcatcccagatgtttgtggaaatttaatcaaattggaatatttataccttttctctaacaacctagcaggccaagttccatcatcactttttaatctac 189  Q
    ||||||||| |||||| ||||||||||||||||||| ||||||||   |||| ||||||||||||| |||||||||||||||||||||||||| ||||||    
T  37712263 agcatcccaaatgtttatggaaatttaatcaaattgaaatatttagcactttcctctaacaacctaacaggccaagttccatcatcactttttcatctac 37712164  T
Q  190 ctcagctttcttttttatgtttatcatctaacaaactagttgggccgattgcaattgaaatcacaaaacgttcaaaattgagc--tgtggatttaagtta 287  Q
    |||| ||||||  ||||| |||| ||  ||||||||||||||| || ||| ||||||||||||||||||||||||||||||||  ||||  |||   | |    
T  37712163 ctcatctttctcatttatatttagcagataacaaactagttggcccaattccaattgaaatcacaaaacgttcaaaattgagctatgtgtttttggatga 37712064  T
Q  288 taacatgttaaatggaacaattccacattggtgttattctttgccttcgttgttagagttatccctcagcgacaaccacctcacagg 374  Q
    ||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||   ||||||||||||||||||||||||    
T  37712063 taacatgttaaatggaacaattccacagtggtgttattctttgccttcattgttagagttgggcctcagcgacaaccacctcacagg 37711977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 152; E-Value: 2e-80
Query Start/End: Original strand, 90 - 374
Target Start/End: Complemental strand, 37640511 - 37640225
Alignment:
Q  90 agcatcccagatgtttgtggaaatttaatcaaattggaatatttataccttttctctaacaacctagcaggccaagttccatcatcactttttaatctac 189  Q
    |||||||||  ||||| |||||||||||||||||||||||||||||  |||| || |||||||||| |||||||||||||||||||||||||| ||||||    
T  37640511 agcatcccaattgtttatggaaatttaatcaaattggaatatttatcactttactttaacaacctaacaggccaagttccatcatcactttttcatctac 37640412  T
Q  190 ctcagctttcttttttatgtttatcatctaacaaactagttgggccgattgcaattgaaatcacaaaacgttcaaaattgag--ctgtggatttaagtta 287  Q
    |||| ||||||  ||||| |||| ||| ||||||||||||||| || ||| ||||||||||| |||||||||| ||||||||   ||||| |||   | |    
T  37640411 ctcatctttctcatttatatttagcatataacaaactagttggcccaattccaattgaaatcgcaaaacgttccaaattgagatatgtgggtttggatga 37640312  T
Q  288 taacatgttaaatggaacaattccacattggtgttattctttgccttcgttgttagagttatccctcagcgacaaccacctcacagg 374  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||| |||||| | ||||||||    
T  37640311 taacatgttaaatggaacaattccacattggtgttattctttgccttcgttgttagagttgtacctcagtgacaacaatctcacagg 37640225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 144; E-Value: 1e-75
Query Start/End: Original strand, 90 - 342
Target Start/End: Complemental strand, 37697426 - 37697172
Alignment:
Q  90 agcatcccagatgtttgtggaaatttaatcaaattggaatatttataccttttctctaacaacctagcaggccaagttccatcatcactttttaatctac 189  Q
    |||||||||  ||||| ||||||||||||||||||||||||||||   |||| ||||||||||||| |||||||||||||||||||||||||| ||||||    
T  37697426 agcatcccaattgtttatggaaatttaatcaaattggaatatttagcactttcctctaacaacctaacaggccaagttccatcatcactttttcatctac 37697327  T
Q  190 ctcagctttcttttttatgtttatcatctaacaaactagttgggccgattgcaattgaaatcacaaaacgttcaaaattgag--ctgtggatttaagtta 287  Q
    | || ||||||  |||| ||||||||| |||||||||||||||||| ||| |||||||||||||||||||||| ||||||||   ||||  |||   | |    
T  37697326 cccacctttctcatttaggtttatcatttaacaaactagttgggccaattccaattgaaatcacaaaacgttccaaattgagttatgtgtttttggatga 37697227  T
Q  288 taacatgttaaatggaacaattccacattggtgttattctttgccttcgttgtta 342  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37697226 taacatgttaaatggaacaattccacattggtgttattctttgccttcgttgtta 37697172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 117; E-Value: 2e-59
Query Start/End: Original strand, 110 - 347
Target Start/End: Complemental strand, 37436326 - 37436087
Alignment:
Q  110 aaatttaatcaaattggaatatttataccttttctctaacaacctagcaggccaagttccatcatcactttttaatctacctcagctttcttttttatgt 209  Q
    |||||||| |||||||||||||||||  |||| ||| |||| |||| |||||||||||||||||||||||||| ||||||| || ||||||  ||||  |    
T  37436326 aaatttaaccaaattggaatatttatcactttcctccaacagcctaacaggccaagttccatcatcactttttcatctaccccacctttctcatttagat 37436227  T
Q  210 ttatcatctaacaaactagttgggccgattgcaattgaaatcacaaaacgttcaaaattgagc--tgtggatttaagttataacatgttaaatggaacaa 307  Q
    ||||||| ||||||||||||||| || ||| |||||||||| |||||||||| ||||||||||  ||||| | ||   ||||||||||||||||||||||    
T  37436226 ttatcatttaacaaactagttggcccaattccaattgaaattacaaaacgtttaaaattgagctatgtgggtctagaatataacatgttaaatggaacaa 37436127  T
Q  308 ttccacattggtgttattctttgccttcgttgttagagtt 347  Q
    ||||||| |||||||||| ||||||||| |||||||||||    
T  37436126 ttccacagtggtgttattatttgccttcattgttagagtt 37436087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 161 - 374
Target Start/End: Original strand, 37392484 - 37392699
Alignment:
Q  161 ccaagttccatcatcactttttaatctacctcagctttcttttttatgtttatcatctaacaaactagttgggccgattgcaattgaaatcacaaaacgt 260  Q
    |||||||||||||||||||||| |||||||  | ||||||||||||  |||||||||||||||||||||||| || ||| || || |||||||||||||     
T  37392484 ccaagttccatcatcactttttcatctacccaacctttcttttttagatttatcatctaacaaactagttggcccaattccagttcaaatcacaaaacgc 37392583  T
Q  261 tcaaaattgagc--tgtggatttaagttataacatgttaaatggaacaattccacattggtgttattctttgccttcgttgttagagttatccctcagcg 358  Q
    ||||||||||||  |||| ||||| ||| ||||||||| ||||| |||||||| || |||||||||||||||||||| ||  |||||||   |||||  |    
T  37392584 tcaaaattgagcattgtgaatttaggttctaacatgtttaatggtacaattccgcagtggtgttattctttgccttcattaatagagttggacctcaatg 37392683  T
Q  359 acaaccacctcacagg 374  Q
    ||||||| ||||||||    
T  37392684 acaaccatctcacagg 37392699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 20 - 80
Target Start/End: Original strand, 37392337 - 37392397
Alignment:
Q  20 ggttcctctatctttgtggaacctcactcaactaacacatttggacctttcacaaaataaa 80  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37392337 ggttcctctatctttgtggaacctcactcaactaacacatttggacctttcacaaaataaa 37392397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 21 - 79
Target Start/End: Complemental strand, 37824675 - 37824617
Alignment:
Q  21 gttcctctatctttgtggaacctcactcaactaacacatttggacctttcacaaaataa 79  Q
    |||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||    
T  37824675 gttcctctatctttgtggaacctcacccaactaacatatttggacctttcacaaaataa 37824617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 20 - 80
Target Start/End: Complemental strand, 37436488 - 37436428
Alignment:
Q  20 ggttcctctatctttgtggaacctcactcaactaacacatttggacctttcacaaaataaa 80  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||||||||  |||||||    
T  37436488 ggttcctctatctttgtggaacctcactcaactaacatatttggacctttcaagaaataaa 37436428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 273 - 370
Target Start/End: Original strand, 37412962 - 37413059
Alignment:
Q  273 tgtggatttaagttataacatgttaaatggaacaattccacattggtgttattctttgccttcgttgttagagttatccctcagcgacaaccacctca 370  Q
    ||||||||||| | |||| |||||||||||||||| ||| ||||||||||||| ||||  ||| || |||||||| | |||||| |||||||||||||    
T  37412962 tgtggatttaaataataaaatgttaaatggaacaaatcctcattggtgttattatttgttttctttattagagttgtacctcagtgacaaccacctca 37413059  T

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Target: chr5; HSP #15
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 20 - 80
Target Start/End: Complemental strand, 37533881 - 37533821
Alignment:
Q  20 ggttcctctatctttgtggaacctcactcaactaacacatttggacctttcacaaaataaa 80  Q
    ||||||||||||||||||||||||||| ||||||||| ||||||| |||||||| ||||||    
T  37533881 ggttcctctatctttgtggaacctcacccaactaacatatttggatctttcacataataaa 37533821  T

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Target: chr5; HSP #16
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 20 - 80
Target Start/End: Complemental strand, 37697568 - 37697508
Alignment:
Q  20 ggttcctctatctttgtggaacctcactcaactaacacatttggacctttcacaaaataaa 80  Q
    ||||||||||||||||||||||||||||||||||||| ||||||| |||||| | ||||||    
T  37697568 ggttcctctatctttgtggaacctcactcaactaacatatttggatctttcaaataataaa 37697508  T

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Target: chr5; HSP #17
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 20 - 71
Target Start/End: Original strand, 37400191 - 37400242
Alignment:
Q  20 ggttcctctatctttgtggaacctcactcaactaacacatttggacctttca 71  Q
    ||||||||||||||||||||||||||| ||||||||| ||||||||||||||    
T  37400191 ggttcctctatctttgtggaacctcacccaactaacatatttggacctttca 37400242  T

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Target: chr5; HSP #18
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 20 - 71
Target Start/End: Complemental strand, 37640653 - 37640602
Alignment:
Q  20 ggttcctctatctttgtggaacctcactcaactaacacatttggacctttca 71  Q
    ||||||||||||||||||||||||||| ||||||||| ||||||||||||||    
T  37640653 ggttcctctatctttgtggaacctcacccaactaacatatttggacctttca 37640602  T

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Target: chr5; HSP #19
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 20 - 71
Target Start/End: Complemental strand, 37712405 - 37712354
Alignment:
Q  20 ggttcctctatctttgtggaacctcactcaactaacacatttggacctttca 71  Q
    ||||||||||||||||||||| ||||| ||||||||||||||||||||||||    
T  37712405 ggttcctctatctttgtggaatctcacccaactaacacatttggacctttca 37712354  T

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Target: chr5; HSP #20
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 22 - 71
Target Start/End: Original strand, 37412657 - 37412706
Alignment:
Q  22 ttcctctatctttgtggaacctcactcaactaacacatttggacctttca 71  Q
    |||||| |||||| ||||||||||||||||||||||||||||||||||||    
T  37412657 ttcctcaatctttatggaacctcactcaactaacacatttggacctttca 37412706  T

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Target: chr5; HSP #21
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 20 - 71
Target Start/End: Complemental strand, 37703449 - 37703398
Alignment:
Q  20 ggttcctctatctttgtggaacctcactcaactaacacatttggacctttca 71  Q
    ||||||||||||||||||||| ||||| ||||||||| ||||||||||||||    
T  37703449 ggttcctctatctttgtggaatctcacccaactaacatatttggacctttca 37703398  T

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Target: chr5; HSP #22
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 22 - 56
Target Start/End: Complemental strand, 37429520 - 37429486
Alignment:
Q  22 ttcctctatctttgtggaacctcactcaactaaca 56  Q
    |||||||||||||||||||||||||||||||||||    
T  37429520 ttcctctatctttgtggaacctcactcaactaaca 37429486  T

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Target: chr5; HSP #23
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 20 - 62
Target Start/End: Complemental strand, 37595105 - 37595063
Alignment:
Q  20 ggttcctctatctttgtggaacctcactcaactaacacatttg 62  Q
    ||||||||||||||||||||||||||| ||||||||| |||||    
T  37595105 ggttcctctatctttgtggaacctcacccaactaacatatttg 37595063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 295 - 340
Target Start/End: Complemental strand, 37429164 - 37429119
Alignment:
Q  295 ttaaatggaacaattccacattggtgttattctttgccttcgttgt 340  Q
    ||||| |||||||||||||| ||||||||||| |||||||||||||    
T  37429164 ttaaacggaacaattccacactggtgttattccttgccttcgttgt 37429119  T

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Target: chr5; HSP #25
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 150 - 200
Target Start/End: Complemental strand, 37429311 - 37429261
Alignment:
Q  150 aacctagcaggccaagttccatcatcactttttaatctacctcagctttct 200  Q
    |||||| |||||||||||||||||||| | ||| ||||| |||||||||||    
T  37429311 aacctaacaggccaagttccatcatcattgtttcatctaactcagctttct 37429261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #26
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 287 - 336
Target Start/End: Complemental strand, 37343321 - 37343272
Alignment:
Q  287 ataacatgttaaatggaacaattccacattggtgttattctttgccttcg 336  Q
    |||||||||||||||||| ||||| | ||||||||| | |||||||||||    
T  37343321 ataacatgttaaatggaaaaattctaaattggtgttttactttgccttcg 37343272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #27
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 90 - 134
Target Start/End: Original strand, 37381856 - 37381900
Alignment:
Q  90 agcatcccagatgtttgtggaaatttaatcaaattggaatattta 134  Q
    ||||||||| |||||| || ||||||||||||||| |||||||||    
T  37381856 agcatcccaaatgtttttgaaaatttaatcaaattagaatattta 37381900  T

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Target: chr4 (Bit Score: 132; Significance: 2e-68; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 132; E-Value: 2e-68
Query Start/End: Original strand, 90 - 374
Target Start/End: Original strand, 16842397 - 16842683
Alignment:
Q  90 agcatcccagatgtttgtggaaatttaatcaaattggaatatttataccttttctctaacaacctagcaggccaagttccatcatcactttttaatctac 189  Q
    |||||||||  ||||| ||||||||||| |||||| |||||| |||  |||| ||||||||  ||| |||||||||||||||||||||||||| ||||||    
T  16842397 agcatcccaattgtttatggaaatttaagcaaattagaatatctatcactttcctctaacagtctaacaggccaagttccatcatcactttttcatctac 16842496  T
Q  190 ctcagctttcttttttatgtttatcatctaacaaactagttgggccgattgcaattgaaatcacaaaacgttcaaaattgagc--tgtggatttaagtta 287  Q
    || | ||||||  ||||| |||||||| ||||||||| ||||| || ||| |||||||||||||||||  |||||||||||||  ||||| ||| ||| |    
T  16842497 cttatctttctaatttatatttatcatttaacaaactggttggcccaattccaattgaaatcacaaaaacttcaaaattgagctatgtgggtttgagtga 16842596  T
Q  288 taacatgttaaatggaacaattccacattggtgttattctttgccttcgttgttagagttatccctcagcgacaaccacctcacagg 374  Q
     |||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||| |||||  || ||||||| ||||||||    
T  16842597 gaacatgttaaatggaacaattccaaattggtgttattctttgccttcgttgttaaagttgtcccttcgctacaaccatctcacagg 16842683  T

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Target: chr4; HSP #2
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 287 - 347
Target Start/End: Original strand, 24217460 - 24217520
Alignment:
Q  287 ataacatgttaaatggaacaattccacattggtgttattctttgccttcgttgttagagtt 347  Q
    ||||||||||||||||||||||||| || ||||||||||| ||||||||||||||||||||    
T  24217460 ataacatgttaaatggaacaattccgcaatggtgttattccttgccttcgttgttagagtt 24217520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 20 - 80
Target Start/End: Original strand, 16842255 - 16842315
Alignment:
Q  20 ggttcctctatctttgtggaacctcactcaactaacacatttggacctttcacaaaataaa 80  Q
    ||||||||||||||||||||||||||||||||||||| ||||||| |||||| | ||||||    
T  16842255 ggttcctctatctttgtggaacctcactcaactaacatatttggatctttcaaataataaa 16842315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 285 - 327
Target Start/End: Complemental strand, 23496123 - 23496081
Alignment:
Q  285 ttataacatgttaaatggaacaattccacattggtgttattct 327  Q
    ||||||||||||||||||||||||||||| |||||||| ||||    
T  23496123 ttataacatgttaaatggaacaattccacgttggtgtttttct 23496081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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