View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4972-Insertion-1 (Length: 1033)

Name: NF4972-Insertion-1
Description: NF4972
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4972-Insertion-1
NF4972-Insertion-1
[»] chr7 (12 HSPs)
chr7 (627-1033)||(8514520-8514929)
chr7 (143-382)||(27963674-27963911)
chr7 (175-381)||(39274554-39274751)
chr7 (552-773)||(26001997-26002220)
chr7 (556-773)||(44115428-44115647)
chr7 (767-837)||(39273898-39273968)
chr7 (16-67)||(27963961-27964012)
chr7 (574-698)||(48847516-48847640)
chr7 (574-677)||(15494909-15495012)
chr7 (574-698)||(1264298-1264422)
chr7 (574-647)||(14231573-14231647)
chr7 (574-647)||(26907119-26907192)
[»] chr2 (3 HSPs)
chr2 (141-381)||(26443027-26443266)
chr2 (767-837)||(26441975-26442045)
chr2 (13-67)||(26443312-26443366)
[»] chr8 (6 HSPs)
chr8 (143-382)||(14837779-14838016)
chr8 (143-385)||(22783719-22783959)
chr8 (573-701)||(16804413-16804541)
chr8 (16-67)||(14837677-14837728)
chr8 (13-63)||(22784014-22784064)
chr8 (574-698)||(8163500-8163624)
[»] chr4 (4 HSPs)
chr4 (143-385)||(6221931-6222173)
chr4 (13-67)||(6222224-6222278)
chr4 (574-677)||(23143944-23144047)
chr4 (574-644)||(38466180-38466250)
[»] chr3 (10 HSPs)
chr3 (552-772)||(38894695-38894917)
chr3 (552-708)||(21037409-21037565)
chr3 (571-695)||(36155145-36155269)
chr3 (795-837)||(37220511-37220553)
chr3 (590-698)||(24826617-24826725)
chr3 (590-698)||(33648648-33648756)
chr3 (590-698)||(24759289-24759397)
chr3 (574-635)||(31687241-31687302)
chr3 (592-677)||(52381607-52381692)
chr3 (593-698)||(53025194-53025299)
[»] chr1 (4 HSPs)
chr1 (552-765)||(19252237-19252456)
chr1 (767-837)||(47935637-47935707)
chr1 (571-701)||(47741706-47741836)
chr1 (574-698)||(25226344-25226468)
[»] chr5 (2 HSPs)
chr5 (767-837)||(34505658-34505728)
chr5 (574-698)||(30443196-30443320)
[»] scaffold1028 (1 HSPs)
scaffold1028 (767-834)||(2009-2076)
[»] chr6 (7 HSPs)
chr6 (574-647)||(31891834-31891907)
chr6 (966-1015)||(30133367-30133416)
chr6 (584-677)||(34417357-34417450)
chr6 (574-698)||(21999665-21999789)
chr6 (966-1014)||(30124712-30124760)
chr6 (968-1010)||(21956421-21956463)
chr6 (966-1015)||(29939295-29939344)


Alignment Details
Target: chr7 (Bit Score: 361; Significance: 0; HSPs: 12)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 361; E-Value: 0
Query Start/End: Original strand, 627 - 1033
Target Start/End: Original strand, 8514520 - 8514929
Alignment:
627 tggtcttccaaaccacaagatcacattaaaggtagaagttcctgttatgctactgaggaacttggacataactgctggcttacaacgtaacacgcttaat 726  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
8514520 tggtcttccaaaccacaagatcacattaaaggtagaagttcctgttatgctactgaggaacttggacataactgctggcttacaacgtaacacgcttaat 8514619  T
727 aataacaagaatggggatatatgttttagaaggaagagtgatttcagaatgtataaccttctacatacaatataagaatcatttagcttattttgtaatt 826  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
8514620 aataacaagaatggggagatatgttttagaaggaagagtgatttcagaatgtataaccttctacatacaatataagaatcatttagcttattttgtaatt 8514719  T
827 cactttatctagagtgggatttcatgttcgtttgtgcattaaatttagtgggaccgtaaatc-aaaaaagaattggtatagtttcacnnnnnnnttatag 925  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||       ||||||    
8514720 cactttatctagagtgggatttcatgttcgtttgtgcattaaatttagtgggaccgtaaatcaaaaaaagaattggtatagtttcacaaaataattatag 8514819  T
926 cattcatgaag-aatccgtgctcatctcctcttacattcttattcttatatatagtaagagcttcttccattatatgagcttgagcaagc-agtctgctc 1023  Q
    ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
8514820 cattcatgaagaaatccgtgctcatctcctcttacattcttattcttatatatagtaagagcttcttccattatatgagcttgagcaagcaagtctgctc 8514919  T
1024 tcattcctgc 1033  Q
    ||||||||||    
8514920 tcattcctgc 8514929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 200; E-Value: 1e-108
Query Start/End: Original strand, 143 - 382
Target Start/End: Complemental strand, 27963911 - 27963674
Alignment:
143 ttgtgacattgctcgctgaggtgccaattagaaagtagctaaaagcacatgtacataccaatgaaaatgcatttttctgtcacaatttgactttaggata 242  Q
    |||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||    
27963911 ttgtgacattgctcgctgaggtgccagttagaaagtagctaagagcacatgtacataccaatgaaaatgcatttttctgtctcaatttgactttaggtta 27963812  T
243 agtttgatagatttcataggaattggctatgtgagcttgatgacagcaagagggaatttgatacaaaacattaacttttgtaattactaaaacattaacc 342  Q
    ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
27963811 agtttgatagatttcatgggaattggctatgtgagcttgatgacagcaagagggaatttgatac-aaacattaacttttgtaattactaaaacattaacc 27963713  T
343 aactatatttttagatgatttgatattcccttaaaaatag 382  Q
    |||||||||||||||||| |||| ||||||||||||||||    
27963712 aactatatttttagatga-ttgacattcccttaaaaatag 27963674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 142; E-Value: 5e-74
Query Start/End: Original strand, 175 - 381
Target Start/End: Complemental strand, 39274751 - 39274554
Alignment:
175 aagtagctaaaagcacatgtacataccaatgaaaatgcatttttctgtcacaatttgactttaggataagtttgatagatttcataggaattggctatgt 274  Q
    ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||    
39274751 aagtatctaaaagcacatgtacataccaatgaaaatgcatttttctgtcacaatttgactttaggataagtttgatagctttcatgggaattggctatgt 39274652  T
275 gagcttgatgacagcaagagggaatttgatacaaaacattaacttttgtaattactaaaacattaaccaactatatttttagatgatttgatattccctt 374  Q
     ||||||||  ||||||||||||||||||||| ||||||||||||||||||||||||||||||        |||||||||||||||||||| ||||||||    
39274651 cagcttgatagcagcaagagggaatttgatac-aaacattaacttttgtaattactaaaacat--------tatatttttagatgatttgacattccctt 39274561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 129; E-Value: 3e-66
Query Start/End: Original strand, 552 - 773
Target Start/End: Original strand, 26001997 - 26002220
Alignment:
552 ttgccccagtagtactgtagctaataggcctgatgatgttcacacaccagaatttttgaacacgattaatgcatctggtcttccaaaccacaagatcaca 651  Q
    |||||||||||||| ||| ||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||| || |||||||||||||||    
26001997 ttgccccagtagtattgttgctaacaggcctgatgatgttcacacaccagaatttttgaacacaattaatgcatctggtctacctaaccacaagatcaca 26002096  T
652 ttaaaggtagaagttcctgttatgctactgaggaacttggacataactgctggctta--caacgtaacacgcttaataataacaagaatggggatatatg 749  Q
    |||||||||| ||||||||||||| |  ||||||| |||||||||| ||||||||||  ||| | ||||| ||||||||| ||||||||||| | |||||    
26002097 ttaaaggtaggagttcctgttatgttgttgaggaatttggacataaatgctggcttatgcaatggaacacacttaataattacaagaatgggaagatatg 26002196  T
750 ttttagaaggaagagtgatttcag 773  Q
    |  |||||||||| ||||||||||    
26002197 tgctagaaggaagggtgatttcag 26002220  T

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Target: chr7; HSP #5
Raw Score: 121; E-Value: 2e-61
Query Start/End: Original strand, 556 - 773
Target Start/End: Original strand, 44115428 - 44115647
Alignment:
556 cccagtagtactgtagctaataggcctgatgatgttcacacaccagaatttttgaacacgattaatgcatctggtcttccaaaccacaagatcacattaa 655  Q
    |||||||||| ||| || ||||||||||||||||||||||||||| ||||||||||||| |||| ||||||||||||||||||||||||||||| ||| |    
44115428 cccagtagtattgttgccaataggcctgatgatgttcacacaccaaaatttttgaacactattagtgcatctggtcttccaaaccacaagatcatattga 44115527  T
656 aggtagaagttcctgttatgctactgaggaacttggacataactgctggctta--caacgtaacacgcttaataataacaagaatggggatatatgtttt 753  Q
    |||||||||||||| |||||||||| ||||||||||||||| | | ||| |||  ||||| |||||| ||||||||||||||||| |||| |||| | ||    
44115528 aggtagaagttcctattatgctactaaggaacttggacatatccgttggtttatgcaacgaaacacgtttaataataacaagaatcgggagatatatgtt 44115627  T
754 agaaggaagagtgatttcag 773  Q
    |||||| |||||||| ||||    
44115628 agaagggagagtgatctcag 44115647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 59; E-Value: 2e-24
Query Start/End: Original strand, 767 - 837
Target Start/End: Complemental strand, 39273968 - 39273898
Alignment:
767 atttcagaatgtataaccttctacatacaatataagaatcatttagcttattttgtaattcactttatcta 837  Q
    |||||| ||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||    
39273968 atttcataatgtataaacttctacatataatataagaatcatttagcttattttgtaattcactttatcta 39273898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 48; E-Value: 7e-18
Query Start/End: Original strand, 16 - 67
Target Start/End: Complemental strand, 27964012 - 27963961
Alignment:
16 aggacaaatcacataattaaacacaaattctggaggtaaagtaaaaatgaag 67  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||||||||    
27964012 aggacaaatcacatacttaaacacaaattctggaggtaaagtaaaaatgaag 27963961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 41; E-Value: 0.0000000000001
Query Start/End: Original strand, 574 - 698
Target Start/End: Complemental strand, 48847640 - 48847516
Alignment:
574 aataggcctgatgatgttcacacaccagaatttttgaacacgattaatgcatctggtcttccaaaccacaagatcacattaaaggtagaagttcctgtta 673  Q
    |||||||| |||||| |||||||||||||||| |||||||| || ||| |||| |||||||| || |||||||| || || || || | ||||||| |||    
48847640 aataggccagatgatattcacacaccagaattcttgaacacaatcaattcatcgggtcttcctaatcacaagattactttgaaagttggagttcctatta 48847541  T
674 tgctactgaggaacttggacataac 698  Q
    || |  |||| || |||||||||||    
48847540 tgttgttgagaaatttggacataac 48847516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 574 - 677
Target Start/End: Complemental strand, 15495012 - 15494909
Alignment:
574 aataggcctgatgatgttcacacaccagaatttttgaacacgattaatgcatctggtcttccaaaccacaagatcacattaaaggtagaagttcctgtta 673  Q
    |||||||| |||||||| ||||||||||||||| | ||||| |||| |||||| ||||| || |||||||| || |   |||| |||| ||| |||||||    
15495012 aataggccggatgatgtgcacacaccagaatttcttaacactattactgcatccggtctacctaaccacaaaattaagctaaaagtaggagtccctgtta 15494913  T
674 tgct 677  Q
    ||||    
15494912 tgct 15494909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 574 - 698
Target Start/End: Original strand, 1264298 - 1264422
Alignment:
574 aataggcctgatgatgttcacacaccagaatttttgaacacgattaatgcatctggtcttccaaaccacaagatcacattaaaggtagaagttcctgtta 673  Q
    |||||||| |||||| | |||| ||||||||| |||||||| || ||| |||| |||||||| || |||||||| || || || || | ||||||| |||    
1264298 aataggccagatgatatacacaaaccagaattcttgaacacaatcaattcatcgggtcttcctaatcacaagattactttgaaagttggagttcctatta 1264397  T
674 tgctactgaggaacttggacataac 698  Q
    || |  |||| || |||||||||||    
1264398 tgttgttgagaaatttggacataac 1264422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 574 - 647
Target Start/End: Original strand, 14231573 - 14231647
Alignment:
574 aataggcctgatgatgttcacacaccagaatttttgaacac-gattaatgcatctggtcttccaaaccacaagat 647  Q
    |||||||| |||||| |||||||||||||||| ||||||||  || ||| |||| |||||||| || ||||||||    
14231573 aataggccagatgatattcacacaccagaattcttgaacacaaatcaattcatcgggtcttcctaatcacaagat 14231647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 574 - 647
Target Start/End: Complemental strand, 26907192 - 26907119
Alignment:
574 aataggcctgatgatgttcacacaccagaatttttgaacacgattaatgcatctggtcttccaaaccacaagat 647  Q
    |||| ||| |||||| |||||||||||||||| |||||||| || ||| ||||  ||||||| || ||||||||    
26907192 aatatgccagatgatattcacacaccagaattcttgaacactatcaattcatcaagtcttcctaatcacaagat 26907119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 205; Significance: 1e-111; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 205; E-Value: 1e-111
Query Start/End: Original strand, 141 - 381
Target Start/End: Complemental strand, 26443266 - 26443027
Alignment:
141 ggttgtgacattgctcgctgaggtgccaattagaaagtagctaaaagcacatgtacataccaatgaaaatgcatttttctgtcacaatttgactttagga 240  Q
    ||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
26443266 ggttgtgacattgctcgctaaggtgccaattagaaagtatctaaaagcacatgtacataccaatgaaagtgcatttttctgtcacaatttgactttagga 26443167  T
241 taagtttgatagatttcataggaattggctatgtgagcttgatgacagcaagagggaatttgatacaaaacattaacttttgtaattactaaaacattaa 340  Q
    ||||||||||||||||||| |||||||||||||| |||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
26443166 taagtttgatagatttcatgggaattggctatgtcagcttgataacagcaagagggaatttgatac-aaacattaacttttgtaattactaaaacattaa 26443068  T
341 ccaactatatttttagatgatttgatattcccttaaaaata 381  Q
    ||||||||||||||||||||||||| |||||||||||||||    
26443067 ccaactatatttttagatgatttgacattcccttaaaaata 26443027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 63; E-Value: 8e-27
Query Start/End: Original strand, 767 - 837
Target Start/End: Complemental strand, 26442045 - 26441975
Alignment:
767 atttcagaatgtataaccttctacatacaatataagaatcatttagcttattttgtaattcactttatcta 837  Q
    |||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
26442045 atttcataatgtataaacttctacatacaatataagaatcatttagcttattttgtaattcactttatcta 26441975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 47; E-Value: 3e-17
Query Start/End: Original strand, 13 - 67
Target Start/End: Complemental strand, 26443366 - 26443312
Alignment:
13 aagaggacaaatcacataattaaacacaaattctggaggtaaagtaaaaatgaag 67  Q
    ||||||||||||||||||  |||||||||||||||||||||||||||||||||||    
26443366 aagaggacaaatcacataggtaaacacaaattctggaggtaaagtaaaaatgaag 26443312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 200; Significance: 1e-108; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 200; E-Value: 1e-108
Query Start/End: Original strand, 143 - 382
Target Start/End: Original strand, 14837779 - 14838016
Alignment:
143 ttgtgacattgctcgctgaggtgccaattagaaagtagctaaaagcacatgtacataccaatgaaaatgcatttttctgtcacaatttgactttaggata 242  Q
    |||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||    
14837779 ttgtgacattgctcgctgaggtgccagttagaaagtagctaagagcacatgtacataccaatgaaaatgcatttttctgtctcaatttgactttaggtta 14837878  T
243 agtttgatagatttcataggaattggctatgtgagcttgatgacagcaagagggaatttgatacaaaacattaacttttgtaattactaaaacattaacc 342  Q
    ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
14837879 agtttgatagatttcatgggaattggctatgtgagcttgatgacagcaagagggaatttgatac-aaacattaacttttgtaattactaaaacattaacc 14837977  T
343 aactatatttttagatgatttgatattcccttaaaaatag 382  Q
    |||||||||||||||||| |||| ||||||||||||||||    
14837978 aactatatttttagatga-ttgacattcccttaaaaatag 14838016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 191; E-Value: 1e-103
Query Start/End: Original strand, 143 - 385
Target Start/End: Complemental strand, 22783959 - 22783719
Alignment:
143 ttgtgacattgctcgctgaggtgccaattagaaagtagctaaaagcacatgtacataccaatgaaaatgcatttttctgtcacaatttgactttaggata 242  Q
    ||||| |||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||    
22783959 ttgtggcattgctcgctgaggtgccagttagaaagtagctaagagcacatgtacataccaatgaaaatgcatttatctgtctcaatttgactttaggata 22783860  T
243 agtttgatagatttcataggaattggctatgtgagcttgatgacagcaagagggaatttgatacaaaacattaacttttgtaattactaaaacattaacc 342  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||| |||| |||||||||||||||||||||||||||||||||||    
22783859 agtttgatagatttcatgggaattggctatgtgagcttgatgacagccagagggaatttcatac-aaacattaacttttgtaattactaaaacattaacc 22783761  T
343 aactatatttttagatgatttgatattcccttaaaaatagcag 385  Q
    |||||||||||||||||| |||| |||||||||||||||||||    
22783760 aactatatttttagatga-ttgacattcccttaaaaatagcag 22783719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 53; E-Value: 7e-21
Query Start/End: Original strand, 573 - 701
Target Start/End: Original strand, 16804413 - 16804541
Alignment:
573 taataggcctgatgatgttcacacaccagaatttttgaacacgattaatgcatctggtcttccaaaccacaagatcacattaaaggtagaagttcctgtt 672  Q
    |||||||||||||||| |||||||||  ||||| |||||||| ||||||||||||||| ||||||| ||||| || |  || ||||||| ||| ||||||    
16804413 taataggcctgatgatattcacacactggaattcttgaacacaattaatgcatctggtattccaaatcacaaaataaagttgaaggtaggagtccctgtt 16804512  T
673 atgctactgaggaacttggacataactgc 701  Q
    ||| || || | ||||||||||| |||||    
16804513 atgttattgtgaaacttggacattactgc 16804541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 48; E-Value: 7e-18
Query Start/End: Original strand, 16 - 67
Target Start/End: Original strand, 14837677 - 14837728
Alignment:
16 aggacaaatcacataattaaacacaaattctggaggtaaagtaaaaatgaag 67  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||||||||    
14837677 aggacaaatcacatacttaaacacaaattctggaggtaaagtaaaaatgaag 14837728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 43; E-Value: 0.000000000000006
Query Start/End: Original strand, 13 - 63
Target Start/End: Complemental strand, 22784064 - 22784014
Alignment:
13 aagaggacaaatcacataattaaacacaaattctggaggtaaagtaaaaat 63  Q
    |||||||||||||||||| ||||||||||||| ||||||||||||||||||    
22784064 aagaggacaaatcacatacttaaacacaaattttggaggtaaagtaaaaat 22784014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 574 - 698
Target Start/End: Original strand, 8163500 - 8163624
Alignment:
574 aataggcctgatgatgttcacacaccagaatttttgaacacgattaatgcatctggtcttccaaaccacaagatcacattaaaggtagaagttcctgtta 673  Q
    ||||||||  ||||| |||||||||||||||| |||||||| || ||| |||| |||||||| || |||||||| || || || || | ||||||| |||    
8163500 aataggccaaatgatattcacacaccagaattcttgaacactatcaattcatcaggtcttcctaatcacaagattactttgaaagttggagttcctatta 8163599  T
674 tgctactgaggaacttggacataac 698  Q
    || |  |||| || |||||||||||    
8163600 tgttgttgagaaatttggacataac 8163624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 194; Significance: 1e-105; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 143 - 385
Target Start/End: Complemental strand, 6222173 - 6221931
Alignment:
143 ttgtgacattgctcgctgaggtgccaattagaaagtagctaaaagcacatgtacataccaatgaaaatgcatttttct--gtcacaatttgactttagga 240  Q
    |||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||| |  ||| ||||||||||||||||    
6222173 ttgtgacattgctcgctgaggtgccatttagaaagtagctaagagcacatgtacataccaatgaaaatgcatttttttttgtctcaatttgactttagga 6222074  T
241 taagtttgatagatttcataggaattggctatgtgagcttgatgacagcaagagggaatttgatacaaaacattaacttttgtaattactaaaacattaa 340  Q
    ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
6222073 taagtttgatagatttcatgggaattggctatgtgagcttgatgacagcaagagggaatttgatac-aaacattaacttttgtaattactaaaacattaa 6221975  T
341 ccaactatatttttagatgatttgatattcccttaaaaatagcag 385  Q
    |||||||||||||||||||| |||| |||||||||||||||||||    
6221974 ccaactatatttttagatga-ttgacattcccttaaaaatagcag 6221931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 39; E-Value: 0.000000000002
Query Start/End: Original strand, 13 - 67
Target Start/End: Complemental strand, 6222278 - 6222224
Alignment:
13 aagaggacaaatcacataattaaacacaaattctggaggtaaagtaaaaatgaag 67  Q
    |||||||||| ||||||  |||||||||||||||| |||||||||||||||||||    
6222278 aagaggacaactcacattcttaaacacaaattctgaaggtaaagtaaaaatgaag 6222224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 574 - 677
Target Start/End: Complemental strand, 23144047 - 23143944
Alignment:
574 aataggcctgatgatgttcacacaccagaatttttgaacacgattaatgcatctggtcttccaaaccacaagatcacattaaaggtagaagttcctgtta 673  Q
    |||||||| |||||||| ||||||||||||||| | ||||| |||| |||||| ||||| || |||||||| || |   |||| |||| ||| |||||||    
23144047 aataggccggatgatgtgcacacaccagaatttcttaacactattactgcatccggtctacctaaccacaaaattaagctaaaagtaggagtccctgtta 23143948  T
674 tgct 677  Q
    ||||    
23143947 tgct 23143944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 574 - 644
Target Start/End: Complemental strand, 38466250 - 38466180
Alignment:
574 aataggcctgatgatgttcacacaccagaatttttgaacacgattaatgcatctggtcttccaaaccacaa 644  Q
    |||||||  |||||||| ||||||||||||||||| ||| | |||||| | || ||||||||||| |||||    
38466250 aataggctggatgatgtacacacaccagaattttttaactctattaattcttccggtcttccaaatcacaa 38466180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 116; Significance: 2e-58; HSPs: 10)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 116; E-Value: 2e-58
Query Start/End: Original strand, 552 - 772
Target Start/End: Complemental strand, 38894917 - 38894695
Alignment:
552 ttgccccagtagtactgtagctaataggcctgatgatgttcacacaccagaatttttgaacacgattaatgcatctggtcttccaaaccacaagatcaca 651  Q
    |||||||| ||||| ||| ||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||| || |||||||||||||||    
38894917 ttgccccattagtattgttgctaataggcctgatgatgttcacacacctgaatttttgaacacaattaatgcatctggtctacctaaccacaagatcaca 38894818  T
652 ttaaaggtagaagttcctgttatgctactgaggaacttggacataactgctggctta--caacgtaacacgcttaataataacaagaatggggatatatg 749  Q
    |||||||||  ||||| |||||||||| ||||||| |||||||||| || || ||||  ||| | ||| ||||||||||| ||||||||||| | |||||    
38894817 ttaaaggtatgagttcatgttatgctattgaggaatttggacataaatgttgacttatgcaatggaacgcgcttaataattacaagaatgggaagatatg 38894718  T
750 ttttagaaggaagagtgatttca 772  Q
    |  |||||||||| |||||||||    
38894717 tactagaaggaagggtgatttca 38894695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 113; E-Value: 1e-56
Query Start/End: Original strand, 552 - 708
Target Start/End: Complemental strand, 21037565 - 21037409
Alignment:
552 ttgccccagtagtactgtagctaataggcctgatgatgttcacacaccagaatttttgaacacgattaatgcatctggtcttccaaaccacaagatcaca 651  Q
    |||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||| || |||||||||||||||    
21037565 ttgccccagtagtactgttgctaataggcctgatgatgttcacacactagaatttttgaacacaattaatgcatctggtctacctaaccacaagatcaca 21037466  T
652 ttaaaggtagaagttcctgttatgctactgaggaacttggacataactgctggctta 708  Q
    |||||||||| ||||||||||||| |  ||||||| |||||||||| ||||||||||    
21037465 ttaaaggtaggagttcctgttatgttgatgaggaatttggacataaatgctggctta 21037409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 57; E-Value: 3e-23
Query Start/End: Original strand, 571 - 695
Target Start/End: Original strand, 36155145 - 36155269
Alignment:
571 gctaataggcctgatgatgttcacacaccagaatttttgaacacgattaatgcatctggtcttccaaaccacaagatcacattaaaggtagaagttcctg 670  Q
    ||||| |||||||||||| |||||||||||||||| |||||||| ||||||||||||||| ||||||| |||||||| |  || || || | ||| ||||    
36155145 gctaacaggcctgatgatattcacacaccagaattcttgaacacaattaatgcatctggtattccaaatcacaagataaagttgaaagtgggagtccctg 36155244  T
671 ttatgctactgaggaacttggacat 695  Q
    ||||| ||||| | |||||||||||    
36155245 ttatgttactgcgaaacttggacat 36155269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 43; E-Value: 0.000000000000006
Query Start/End: Original strand, 795 - 837
Target Start/End: Complemental strand, 37220553 - 37220511
Alignment:
795 aatataagaatcatttagcttattttgtaattcactttatcta 837  Q
    |||||||||||||||||||||||||||||||||||||||||||    
37220553 aatataagaatcatttagcttattttgtaattcactttatcta 37220511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 590 - 698
Target Start/End: Original strand, 24826617 - 24826725
Alignment:
590 ttcacacaccagaatttttgaacacgattaatgcatctggtcttccaaaccacaagatcacattaaaggtagaagttcctgttatgctactgaggaactt 689  Q
    |||||||||||||||| |||||||| || ||| |||| |||||||| || |||||||| || ||||| || | |||| || ||||| | ||||| || ||    
24826617 ttcacacaccagaattcttgaacactatcaattcatcaggtcttcctaatcacaagattactttaaaagttggagttactattatgttgctgagaaattt 24826716  T
690 ggacataac 698  Q
    |||||||||    
24826717 ggacataac 24826725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 590 - 698
Target Start/End: Complemental strand, 33648756 - 33648648
Alignment:
590 ttcacacaccagaatttttgaacacgattaatgcatctggtcttccaaaccacaagatcacattaaaggtagaagttcctgttatgctactgaggaactt 689  Q
    |||||||||||||||| |||||||| || ||| |||| |||||||| || |||||||| || ||||| || | |||| || ||||| | ||||| || ||    
33648756 ttcacacaccagaattcttgaacactatcaattcatcaggtcttcctaatcacaagattactttaaaagttggagttactattatgttgctgagaaattt 33648657  T
690 ggacataac 698  Q
    |||||||||    
33648656 ggacataac 33648648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 590 - 698
Target Start/End: Complemental strand, 24759397 - 24759289
Alignment:
590 ttcacacaccagaatttttgaacacgattaatgcatctggtcttccaaaccacaagatcacattaaaggtagaagttcctgttatgctactgaggaactt 689  Q
    |||||||||||||||| |||||||| || ||| |||| |||||||| || |||||||| || ||||| || | |||| || ||||| |  |||| || ||    
24759397 ttcacacaccagaattcttgaacactatcaattcatcaggtcttcctaatcacaagattactttaaaagttggagttactattatgttgttgagaaattt 24759298  T
690 ggacataac 698  Q
    |||||||||    
24759297 ggacataac 24759289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 574 - 635
Target Start/End: Original strand, 31687241 - 31687302
Alignment:
574 aataggcctgatgatgttcacacaccagaatttttgaacacgattaatgcatctggtcttcc 635  Q
    |||||||| |||||| | |||||||||||||| |||||||| || ||| |||| ||||||||    
31687241 aataggccagatgatatccacacaccagaattcttgaacacaatcaattcatcgggtcttcc 31687302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 592 - 677
Target Start/End: Original strand, 52381607 - 52381692
Alignment:
592 cacacaccagaatttttgaacacgattaatgcatctggtcttccaaaccacaagatcacattaaaggtagaagttcctgttatgct 677  Q
    |||||||| || ||||||||||| | ||||||||| ||| | || ||||||||||| | ||| ||||| | ||||||||| |||||    
52381607 cacacacctgagtttttgaacacaactaatgcatcaggtatccctaaccacaagataaaattgaaggttggagttcctgtcatgct 52381692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 593 - 698
Target Start/End: Complemental strand, 53025299 - 53025194
Alignment:
593 acacaccagaatttttgaacacgattaatgcatctggtcttccaaaccacaagatcacattaaaggtagaagttcctgttatgctactgaggaacttgga 692  Q
    ||||||||||||| |||||||| || ||| |||| |||||||| || |||||||| || ||||| || | |||| || ||||| |  |||| || |||||    
53025299 acacaccagaattcttgaacactatcaattcatcaggtcttcctaatcacaagattactttaaaagttggagttactattatgttgttgagaaatttgga 53025200  T
693 cataac 698  Q
    ||||||    
53025199 cataac 53025194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 64; Significance: 2e-27; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 64; E-Value: 2e-27
Query Start/End: Original strand, 552 - 765
Target Start/End: Complemental strand, 19252456 - 19252237
Alignment:
552 ttgccccagtagtactgtagctaataggcctgatgatgttcacacaccagaatttttgaacacgattaatgcatctggtcttccaaaccacaagatcaca 651  Q
    |||||| || || ||||| || ||||| ||||||||||| ||||||||||| ||| || |||| || || |||||||||||||||||||||||||| |||    
19252456 ttgcccgagcagcactgttgcaaatagacctgatgatgtccacacaccagagtttctgcacacaatcaacgcatctggtcttccaaaccacaagataaca 19252357  T
652 ttaaaggtagaagttc----ctgttatgctactgaggaacttggacataactgctggctta--caacgtaacacgcttaataataacaagaatggggata 745  Q
    || |||| || |||||    ||||||||||| |||||||| | ||||| ||||||||| ||   |||| |||||| ||  | || || |||||||||| |    
19252356 ttgaaggaaggagttcctttctgttatgctattgaggaaccttgacatcactgctggcctatgtaacggaacacgtttggtcatcactagaatggggaga 19252257  T
746 tatgttttagaaggaagagt 765  Q
    |||||||| |||||||||||    
19252256 tatgttttggaaggaagagt 19252237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 59; E-Value: 2e-24
Query Start/End: Original strand, 767 - 837
Target Start/End: Original strand, 47935637 - 47935707
Alignment:
767 atttcagaatgtataaccttctacatacaatataagaatcatttagcttattttgtaattcactttatcta 837  Q
    |||||||||||||| | | ||||||||||||||||||||||||||||||||||||||||||||||||||||    
47935637 atttcagaatgtatgaacatctacatacaatataagaatcatttagcttattttgtaattcactttatcta 47935707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 51; E-Value: 1e-19
Query Start/End: Original strand, 571 - 701
Target Start/End: Original strand, 47741706 - 47741836
Alignment:
571 gctaataggcctgatgatgttcacacaccagaatttttgaacacgattaatgcatctggtcttccaaaccacaagatcacattaaaggtagaagttcctg 670  Q
    ||||| |||||||||||| |||||||||| ||||| |||||||| ||||| ||||||||| ||||||| ||||| || |  || ||||||| ||| ||||    
47741706 gctaacaggcctgatgatattcacacaccggaattcttgaacacaattaacgcatctggtattccaaatcacaaaataaagttgaaggtaggagtccctg 47741805  T
671 ttatgctactgaggaacttggacataactgc 701  Q
    ||||| || || | ||||||||||| |||||    
47741806 ttatgttattgcgaaacttggacattactgc 47741836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 41; E-Value: 0.0000000000001
Query Start/End: Original strand, 574 - 698
Target Start/End: Original strand, 25226344 - 25226468
Alignment:
574 aataggcctgatgatgttcacacaccagaatttttgaacacgattaatgcatctggtcttccaaaccacaagatcacattaaaggtagaagttcctgtta 673  Q
    |||||||| |||||| |||||||||||||||| |||||||| || ||| |||| |||||||| || |||||||| || || || || | ||||||| |||    
25226344 aataggccagatgatattcacacaccagaattcttgaacacaatcaattcatcgggtcttcctaatcacaagattactttgaaagttggagttcctatta 25226443  T
674 tgctactgaggaacttggacataac 698  Q
    || |  |||| || |||||||||||    
25226444 tgttgttgagaaatttggacataac 25226468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 59; Significance: 2e-24; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 59; E-Value: 2e-24
Query Start/End: Original strand, 767 - 837
Target Start/End: Complemental strand, 34505728 - 34505658
Alignment:
767 atttcagaatgtataaccttctacatacaatataagaatcatttagcttattttgtaattcactttatcta 837  Q
    |||||||||||||||| |||| ||||||||||||||||||| |||||||||||||||||||||||||||||    
34505728 atttcagaatgtataaacttcgacatacaatataagaatcaattagcttattttgtaattcactttatcta 34505658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 574 - 698
Target Start/End: Complemental strand, 30443320 - 30443196
Alignment:
574 aataggcctgatgatgttcacacaccagaatttttgaacacgattaatgcatctggtcttccaaaccacaagatcacattaaaggtagaagttcctgtta 673  Q
    |||||||| |||||| |||||| ||||||||| |||||||| || ||| |||| |||||||| || |||||||| || || || || | ||||||| |||    
30443320 aataggccagatgatattcacataccagaattcttgaacacaatcaattcatcgggtcttcctaatcacaagattactttgaaagttggagttcctatta 30443221  T
674 tgctactgaggaacttggacataac 698  Q
    || |  |||| || |||||||||||    
30443220 tgttgttgagaaatttggacataac 30443196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1028 (Bit Score: 48; Significance: 7e-18; HSPs: 1)
Name: scaffold1028
Description:

Target: scaffold1028; HSP #1
Raw Score: 48; E-Value: 7e-18
Query Start/End: Original strand, 767 - 834
Target Start/End: Complemental strand, 2076 - 2009
Alignment:
767 atttcagaatgtataaccttctacatacaatataagaatcatttagcttattttgtaattcactttat 834  Q
    |||||||||||||| | |||||| |||||||||||||||||||| ||||||||||||||| |||||||    
2076 atttcagaatgtatgaacttctaaatacaatataagaatcattttgcttattttgtaatttactttat 2009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 38; Significance: 0.000000000006; HSPs: 7)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 574 - 647
Target Start/End: Complemental strand, 31891907 - 31891834
Alignment:
574 aataggcctgatgatgttcacacaccagaatttttgaacacgattaatgcatctggtcttccaaaccacaagat 647  Q
    |||||||| |||||| |||||||||||||||| |||||||| || ||| |||| |||||||| || ||||||||    
31891907 aataggccagatgatattcacacaccagaattcttgaacacaatcaattcatcgggtcttcctaatcacaagat 31891834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 966 - 1015
Target Start/End: Original strand, 30133367 - 30133416
Alignment:
966 attcttatatatagtaagagcttcttccattatatgagcttgagcaagca 1015  Q
    |||||||||||||||||||||||| |||||||  ||||||||||| ||||    
30133367 attcttatatatagtaagagcttcatccattacctgagcttgagccagca 30133416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 584 - 677
Target Start/End: Complemental strand, 34417450 - 34417357
Alignment:
584 atgatgttcacacaccagaatttttgaacacgattaatgcatctggtcttccaaaccacaagatcacattaaaggtagaagttcctgttatgct 677  Q
    ||||||| ||||| ||||||||| | ||||| || ||||| ||||| ||||||   |||||||||| ||||||| | | |||||||||||||||    
34417450 atgatgtccacactccagaatttctcaacacaatcaatgcttctgggcttccacgtcacaagatcagattaaagattggagttcctgttatgct 34417357  T

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Target: chr6; HSP #4
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 574 - 698
Target Start/End: Complemental strand, 21999789 - 21999665
Alignment:
574 aataggcctgatgatgttcacacaccagaatttttgaacacgattaatgcatctggtcttccaaaccacaagatcacattaaaggtagaagttcctgtta 673  Q
    ||||| || |||||| |||||||||| ||||| |||||||| || ||| |||| |||||||| || |||||||| || || || || | ||||||| |||    
21999789 aatagaccagatgatattcacacaccggaattcttgaacacaatcaattcatcgggtcttcctaatcacaagattactttgaaagttggagttcctatta 21999690  T
674 tgctactgaggaacttggacataac 698  Q
    || |  |||| || |||||||||||    
21999689 tgttgttgagaaatttggacataac 21999665  T

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Target: chr6; HSP #5
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 966 - 1014
Target Start/End: Complemental strand, 30124760 - 30124712
Alignment:
966 attcttatatatagtaagagcttcttccattatatgagcttgagcaagc 1014  Q
    |||||||||||||||||| ||||| |||||||  |||||||||||||||    
30124760 attcttatatatagtaagcgcttcatccattacctgagcttgagcaagc 30124712  T

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Target: chr6; HSP #6
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 968 - 1010
Target Start/End: Original strand, 21956421 - 21956463
Alignment:
968 tcttatatatagtaagagcttcttccattatatgagcttgagc 1010  Q
    |||||||||||||||||||||| |||||||  |||||||||||    
21956421 tcttatatatagtaagagcttcatccattacctgagcttgagc 21956463  T

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Target: chr6; HSP #7
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 966 - 1015
Target Start/End: Original strand, 29939295 - 29939344
Alignment:
966 attcttatatatagtaagagcttcttccattatatgagcttgagcaagca 1015  Q
    |||||||||||||| ||||||||| |||||||  ||||||||||| ||||    
29939295 attcttatatatagcaagagcttcatccattacttgagcttgagcgagca 29939344  T

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