View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4972-Insertion-2 (Length: 859)

Name: NF4972-Insertion-2
Description: NF4972
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4972-Insertion-2
NF4972-Insertion-2
[»] chr6 (7 HSPs)
chr6 (79-468)||(13549185-13549572)
chr6 (685-832)||(13548809-13548957)
chr6 (560-674)||(13548987-13549098)
chr6 (689-790)||(19215309-19215411)
chr6 (717-832)||(31876514-31876631)
chr6 (717-832)||(7457466-7457583)
chr6 (346-424)||(7457783-7457861)
[»] scaffold0017 (3 HSPs)
scaffold0017 (79-271)||(39623-39816)
scaffold0017 (560-828)||(39052-39325)
scaffold0017 (320-412)||(39478-39570)
[»] chr3 (6 HSPs)
chr3 (79-261)||(6078673-6078855)
chr3 (688-790)||(6079294-6079397)
chr3 (689-810)||(11028600-11028721)
chr3 (333-468)||(6078968-6079104)
chr3 (320-434)||(11028885-11028999)
chr3 (560-593)||(6079191-6079224)
[»] chr2 (1 HSPs)
chr2 (580-832)||(13652818-13653072)
[»] chr1 (1 HSPs)
chr1 (689-755)||(19190482-19190548)
[»] chr7 (3 HSPs)
chr7 (572-627)||(26645473-26645528)
chr7 (712-832)||(26645614-26645736)
chr7 (363-429)||(26645270-26645335)
[»] chr5 (1 HSPs)
chr5 (717-832)||(11349481-11349598)
[»] chr4 (3 HSPs)
chr4 (572-627)||(51030827-51030882)
chr4 (702-832)||(51030619-51030751)
chr4 (363-429)||(51031020-51031086)
[»] chr8 (2 HSPs)
chr8 (572-634)||(21350039-21350101)
chr8 (369-468)||(21350203-21350301)


Alignment Details
Target: chr6 (Bit Score: 257; Significance: 1e-142; HSPs: 7)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 257; E-Value: 1e-142
Query Start/End: Original strand, 79 - 468
Target Start/End: Complemental strand, 13549572 - 13549185
Alignment:
Q  79 aggtcgacctgtttatgaaaatgtaggtgattttgtgaatcgatatagaatgatttagttatcttttaagaagtcattgcctgcatgtgcttattagaag 178  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13549572 aggtcgacctgtttatgaaaatgtaggtgattttgtgaatcgatatagaatgatttagttatcttttaagaagtcattgcctgcatgtgcttattagaag 13549473  T
Q  179 ccaacaaatcgagagagcggattagagggaagtcgtacaattttactgctattatttccagtttttgacttttgaactttaaccttaactgtcnnnnnnn 278  Q
    ||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||           
T  13549472 ccaacaaa--gagagagcggattagagggaagtcgtacaattttactgctattatttccagtttttgacttttgaactttaaccttaactgtc-----tt 13549380  T
Q  279 nnnnnnnnnnnncatttactatttgttttcgatca--gcgtgtatggaggacaggagtagaggaatagaagagacaaaataacatctaagaaaaataggg 376  Q
                |||||| ||||||||||||||||  ||  |||||||||||||||||||||||||| |||||||||||||| ||||||| |||||||||    
T  13549379 ttttttttttttcatttattatttgttttcgatcaacgccggtatggaggacaggagtagaggaatataagagacaaaataatatctaaggaaaataggg 13549280  T
Q  377 agccatcgaggtcatcctttgaccgtggcctaaatgtaaatcctcacagc---actggcacgaaattatgaaggaaagggggcataaggtttttg 468  Q
    |||||||||||||| ||||||||||||||||||||||||||||||||| |   ||| ||||||||| ||||||||||||||||||||||||||||    
T  13549279 agccatcgaggtcaccctttgaccgtggcctaaatgtaaatcctcacaacatgactcgcacgaaatgatgaaggaaagggggcataaggtttttg 13549185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 108; E-Value: 9e-54
Query Start/End: Original strand, 685 - 832
Target Start/End: Complemental strand, 13548957 - 13548809
Alignment:
Q  685 gtattttgtacctctgtacttatttgatattggctttgtgttactcaagtatactttacctaagttcaacctctaaactcatttcaacctcaacca-aga 783  Q
    ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||    
T  13548957 gtattttgtacctctgtacttatttaatattggctttgtgttactcaagtatactttacccaagttcaacctctaaactcatttcaacctcaaccataga 13548858  T
Q  784 gtggagagaataag-accataaggagtggg-aaaagctctaaaggtaaata 832  Q
    |||  ||||||||| ||||||||||||||| ||||||||||||||||||||    
T  13548857 gtg--gagaataagaaccataaggagtgggaaaaagctctaaaggtaaata 13548809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 72; E-Value: 3e-32
Query Start/End: Original strand, 560 - 674
Target Start/End: Complemental strand, 13549098 - 13548987
Alignment:
Q  560 gtagaaaaggaaagtgtgatgtaaatagagatgaagaatatttcttatattttgatttcaaagaaaatagtttggnnnnnnnnncttccttcatatatac 659  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||          |||||||||||||||    
T  13549098 gtagaaaaggaaagtgtgatgtaaatagagatgaagaatatttcttatattttgatttcgaagaaaataatttggttttttt---ttccttcatatatac 13549002  T
Q  660 ctataaataaagacc 674  Q
    |||||||||||||||    
T  13549001 ctataaataaagacc 13548987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 63; E-Value: 6e-27
Query Start/End: Original strand, 689 - 790
Target Start/End: Complemental strand, 19215411 - 19215309
Alignment:
Q  689 tttgtacctctgtacttatttgatattggctttgtgttactcaagtatactttacctaagttcaacctctaaactcatttcaacctcaacca-agagtgg 787  Q
    |||||||||||| |||||| |||||||  ||||||||||||||||||||||||||| |  ||||||||||||||||||| |||||||||||| |||||||    
T  19215411 tttgtacctctggacttatatgatatttactttgtgttactcaagtatactttacccatattcaacctctaaactcattccaacctcaaccatagagtgg 19215312  T
Q  788 aga 790  Q
    |||    
T  19215311 aga 19215309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 717 - 832
Target Start/End: Original strand, 31876514 - 31876631
Alignment:
Q  717 gctttgtgttactcaagtatact-ttacctaagttcaacctctaaactcatttcaacctcaacca-agagtggagagaataag-accataaggagtggga 813  Q
    ||||| ||||||||||||||||| ||||| |||||||||  ||||||||||||||| ||||| || |||||  |||||||||| ||||||||  ||||||    
T  31876514 gctttttgttactcaagtatactattacccaagttcaacagctaaactcatttcaatctcaagcatagagt--agagaataagaaccataagtggtggga 31876611  T
Q  814 -aaagctctaaaggtaaata 832  Q
     |||||||||||||||||||    
T  31876612 gaaagctctaaaggtaaata 31876631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 717 - 832
Target Start/End: Complemental strand, 7457583 - 7457466
Alignment:
Q  717 gctttgtgttactcaagtatact-ttacctaagttcaacctctaaactcatttcaacctcaacca-agagtggagagaataaga-ccataaggagtggga 813  Q
    ||||| ||||||||||||||||| ||||| |||||||||  |||||| ||||||| |||||| || |||||  ||||||||||| |||||||  ||||||    
T  7457583 gctttttgttactcaagtatactattacccaagttcaacagctaaacacatttcagcctcaaacatagagt--agagaataagaaccataagtggtggga 7457486  T
Q  814 -aaagctctaaaggtaaata 832  Q
     |||||||||||||||||||    
T  7457485 gaaagctctaaaggtaaata 7457466  T

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Target: chr6; HSP #7
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 346 - 424
Target Start/End: Complemental strand, 7457861 - 7457783
Alignment:
Q  346 agagacaaaataacatctaagaaaaatagggagccatcgaggtcatcctttgaccgtggcctaaatgtaaatcctcaca 424  Q
    ||||| ||||||| || |||| |||||||||||||||| |||||| |||||||| |||| ||||||| |||| ||||||    
T  7457861 agagataaaataatatgtaaggaaaatagggagccatctaggtcaccctttgacagtggactaaatgcaaatgctcaca 7457783  T

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Target: scaffold0017 (Bit Score: 110; Significance: 6e-55; HSPs: 3)
Name: scaffold0017
Description:

Target: scaffold0017; HSP #1
Raw Score: 110; E-Value: 6e-55
Query Start/End: Original strand, 79 - 271
Target Start/End: Complemental strand, 39816 - 39623
Alignment:
Q  79 aggtcgacctgtttatgaaaatgtaggtgattttgtgaatcgatatagaatgatttagttatcttttaagaagtcattgcctgcatgtgcttattagaag 178  Q
    |||||||| ||||||||||||| ||||||||||||| |||| ||||| | ||||||||||||||||||||||| |||||  |||| |||||||||||||     
T  39816 aggtcgacatgtttatgaaaatataggtgattttgttaatcaatatatattgatttagttatcttttaagaagccattggttgcacgtgcttattagaaa 39717  T
Q  179 -ccaacaaatcgagagagcggattagagggaagtcgtacaattttactgctattatttccagtttttgacttttgaactttaaccttaactgtc 271  Q
     ||||||||| ||||||| || |||||||||| ||||||||||||||| ||||||||| ||||| |||||||||| ||||||||||||||||||    
T  39716 accaacaaattgagagagggggttagagggaaatcgtacaattttactactattattttcagttgttgacttttgcactttaaccttaactgtc 39623  T

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Target: scaffold0017; HSP #2
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 560 - 828
Target Start/End: Complemental strand, 39325 - 39052
Alignment:
Q  560 gtagaaaaggaaagtgtgatgtaaatagagatgaagaatatttcttatattttgatttcaaagaaaatagtttggnnnnnnnnnctt--ccttcatatat 657  Q
    |||||||  ||||||||||||||||||||||||| ||| || ||||||||||||||||||||||||||| ||||           ||  |||||||||||    
T  39325 gtagaaattgaaagtgtgatgtaaatagagatgatgaacatatcttatattttgatttcaaagaaaataatttgattttggtttttttcccttcatatat 39226  T
Q  658 a--cctataaataaagaccnnnnnnnnnngtattttgtacctct-gtacttatttgatattggctttgtgttactcaagtatactttacctaagttcaac 754  Q
    |  | ||||||||||||||          || |||||||||||| | ||||||| |||||| |||||||||||||||||||||||||| | ||  |||||    
T  39225 atacttataaataaagacccattttttt-gtgttttgtacctcttggacttattagatatttgctttgtgttactcaagtatactttagccaaactcaac 39127  T
Q  755 ctctaaactcatttcaacctcaacca-agagtggagagaataag-accataaggagtggga-aaagctctaaaggta 828  Q
    | ||||||||||| |||||| ||||| ||||||  ||||||||| |||||||||| ||||| |||||||| ||||||    
T  39126 ccctaaactcattccaacctaaaccatagagtg--gagaataagaaccataaggaatgggagaaagctctgaaggta 39052  T

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Target: scaffold0017; HSP #3
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 320 - 412
Target Start/End: Complemental strand, 39570 - 39478
Alignment:
Q  320 atggaggacaggagtagaggaatagaagagacaaaataacatctaagaaaaatagggagccatcgaggtcatcctttgaccgtggcctaaatg 412  Q
    ||||||||||  |||||||||| |||| ||||||||||| |||||||||||||||||| ||||| |||||| ||||||||| |||||||||||    
T  39570 atggaggacaaaagtagaggaagagaatagacaaaataatatctaagaaaaatagggaaccatctaggtcaccctttgaccatggcctaaatg 39478  T

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Target: chr3 (Bit Score: 74; Significance: 2e-33; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 74; E-Value: 2e-33
Query Start/End: Original strand, 79 - 261
Target Start/End: Original strand, 6078673 - 6078855
Alignment:
Q  79 aggtcgacctgtttatgaaaatgtaggtgattttgtgaatcgatatagaatgattta--gttatcttttaagaagtcattgcctgcatgtgcttattaga 176  Q
    |||||||||||||||||||||||||||| ||||||||||| |||||||||||||||   ||||||||| |||||| |  ||  |||| ||| ||  || |    
T  6078673 aggtcgacctgtttatgaaaatgtaggt-attttgtgaattgatatagaatgatttgttgttatctttcaagaagccggtggttgcacgtgtttggtaaa 6078771  T
Q  177 agccaacaaatcgagagagcggattagagggaagtcgtacaattttactgctattatttccagtttttgacttttgaactttaac 261  Q
    | | ||||||| |||||||||| |||||||||| | ||||||||||| | ||||||||| |||||||||||||||||||||||||    
T  6078772 aacgaacaaattgagagagcgggttagagggaaatggtacaattttaatactattattt-cagtttttgacttttgaactttaac 6078855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 68; E-Value: 6e-30
Query Start/End: Original strand, 688 - 790
Target Start/End: Original strand, 6079294 - 6079397
Alignment:
Q  688 ttttgtacctctgtacttatttgatattggctttgtgttactcaagtatactttacctaagttcaacctctaaactcatttcaacctcaacca-agagtg 786  Q
    ||||||||||||| ||||||||||||||  ||||||||||||||||||||||||||| | |||||||| ||||||||||| |||||||||||| ||||||    
T  6079294 ttttgtacctctggacttatttgatatttactttgtgttactcaagtatactttacccatgttcaacccctaaactcattccaacctcaaccatagagtg 6079393  T
Q  787 gaga 790  Q
    ||||    
T  6079394 gaga 6079397  T

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Target: chr3; HSP #3
Raw Score: 65; E-Value: 4e-28
Query Start/End: Original strand, 689 - 810
Target Start/End: Complemental strand, 11028721 - 11028600
Alignment:
Q  689 tttgtacctctgtacttatttgatattggctttgtgttactcaagtatactttacctaagttcaacctctaaactcatttcaacctcaacca-agagtgg 787  Q
    |||||||| ||  |||||||||||||| ||||||||||||||||||| |||||||| |||||||||| ||||||||||| |||||||||||| ||||||     
T  11028721 tttgtaccactcgacttatttgatatttgctttgtgttactcaagtaaactttacccaagttcaacccctaaactcattccaacctcaaccatagagtg- 11028623  T
Q  788 agagaataag-accataaggagtg 810  Q
     ||||||||| |||||||||||||    
T  11028622 -gagaataagaaccataaggagtg 11028600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 333 - 468
Target Start/End: Original strand, 6078968 - 6079104
Alignment:
Q  333 gtagaggaatagaagagacaaaataacatctaagaaaaatagggagccatcgaggtcatcctttgaccgtggcctaaatgtaaatcctcac--agcactg 430  Q
    |||||| || ||||| |||||| ||| || |||| ||||||||||||||||||||| | ||||| ||| ||||||||||| ||||||||||  ||||||     
T  6078968 gtagagaaagagaagggacaaactaatatttaaggaaaatagggagccatcgaggtaaccctttcaccctggcctaaatgcaaatcctcacatagcactt 6079067  T
Q  431 gcacgaaattatgaaggaaagggggcataaggtttttg 468  Q
    |||| |||| |||||||   || |||||||||||||||    
T  6079068 gcacaaaatgatgaagg-ttggaggcataaggtttttg 6079104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 320 - 434
Target Start/End: Complemental strand, 11028999 - 11028885
Alignment:
Q  320 atggaggacaggagtagaggaatagaagagacaaaataacatctaagaaaaatagggagccatcgaggtcatcctttgaccgtggcctaaatgtaaatcc 419  Q
    ||||| |||| ||||||||||| | |||||||| | ||| |  |||| | ||||||||| ||||||||| | ||||| ||||||||||||||| ||||||    
T  11028999 atggaagacaagagtagaggaagacaagagacacactaataattaaggagaatagggagtcatcgaggtaaccctttcaccgtggcctaaatgcaaatcc 11028900  T
Q  420 tcacagcactggcac 434  Q
    ||| |||||| ||||    
T  11028899 tcatagcactcgcac 11028885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 560 - 593
Target Start/End: Original strand, 6079191 - 6079224
Alignment:
Q  560 gtagaaaaggaaagtgtgatgtaaatagagatga 593  Q
    |||||||| |||||||||||||||||||||||||    
T  6079191 gtagaaaatgaaagtgtgatgtaaatagagatga 6079224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 70; Significance: 4e-31; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 70; E-Value: 4e-31
Query Start/End: Original strand, 580 - 832
Target Start/End: Complemental strand, 13653072 - 13652818
Alignment:
Q  580 gtaaatagagatgaagaatatttcttatattttgatttcaaagaaaatagtttggnnnnnnnnncttccttcatatatacctataaataaagaccnnnnn 679  Q
    ||||||||| |||| ||| || ||||||||||||||||||||||||||| |||||          ||  | |||||||| |||||||||||||||         
T  13653072 gtaaatagatatgatgaacatgtcttatattttgatttcaaagaaaataatttggttttggtatttttttccatatataactataaataaagacccaatt 13652973  T
Q  680 nnnnngtattttgtacctctgtacttatttgatattggctttgtgttactcaagtatactttacctaagttcaacctctaaactcatttcaacctcaacc 779  Q
         ||   |||||||| |  |||||||||||||| |||||||||||||||||||||||||||  |||||||||| ||||||||||| ||| |||||||    
T  13652972 tttttgtgcattgtacctttcgacttatttgatatttgctttgtgttactcaagtatactttactcaagttcaacccctaaactcattccaatctcaacc 13652873  T
Q  780 a-agagtggagagaataag--accataaggagtggga-aaagctctaaaggtaaata 832  Q
    | |||||  ||||||||||  ||| |||||||||||| |||||||||||||||||||    
T  13652872 atagagt--agagaataagaaaccctaaggagtgggagaaagctctaaaggtaaata 13652818  T

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Target: chr1 (Bit Score: 55; Significance: 4e-22; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 55; E-Value: 4e-22
Query Start/End: Original strand, 689 - 755
Target Start/End: Original strand, 19190482 - 19190548
Alignment:
Q  689 tttgtacctctgtacttatttgatattggctttgtgttactcaagtatactttacctaagttcaacc 755  Q
    ||||||| |||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  19190482 tttgtacatctggacttatttgatatttgctttgtgttactcaagtatactttacctaagttcaacc 19190548  T

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Target: chr7 (Bit Score: 48; Significance: 6e-18; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 48; E-Value: 6e-18
Query Start/End: Original strand, 572 - 627
Target Start/End: Original strand, 26645473 - 26645528
Alignment:
Q  572 agtgtgatgtaaatagagatgaagaatatttcttatattttgatttcaaagaaaat 627  Q
    |||||||||||||||||||||| |||||| ||||||||||||||||||||||||||    
T  26645473 agtgtgatgtaaatagagatgatgaatatgtcttatattttgatttcaaagaaaat 26645528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 712 - 832
Target Start/End: Original strand, 26645614 - 26645736
Alignment:
Q  712 tattggctttgtgttactcaagtatact-ttacctaagttcaacctctaaactcatttcaacctcaaccaagagtggagagaataa-gaccataaggagt 809  Q
    |||| ||||||||||||||||||||||| ||||| || ||||||  ||||||| ||||||| ||||| || | | | |||||||||  ||||||||||||    
T  26645614 tatttgctttgtgttactcaagtatactattacccaaattcaacagctaaacttatttcaagctcaagcatg-gagtagagaataataaccataaggagt 26645712  T
Q  810 ggga-aaagctctaaaggtaaata 832  Q
    |||| |||||||||||||||||||    
T  26645713 gggagaaagctctaaaggtaaata 26645736  T

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Target: chr7; HSP #3
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 363 - 429
Target Start/End: Original strand, 26645270 - 26645335
Alignment:
Q  363 taagaaaaatagggagccatcgaggtcatcctttgaccgtggcctaaatgtaaatcctcacagcact 429  Q
    |||| |||||||||||||||| |||||| |||||| | |||||||||||| ||||||||||||||||    
T  26645270 taaggaaaatagggagccatctaggtcaccctttggcagtggcctaaatg-aaatcctcacagcact 26645335  T

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Target: chr5 (Bit Score: 45; Significance: 3e-16; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 717 - 832
Target Start/End: Complemental strand, 11349598 - 11349481
Alignment:
Q  717 gctttgtgttactcaagtatact-ttacctaagttcaacctctaaactcatttcaacctcaacca-agagtggagagaataag-accataaggagtggga 813  Q
    ||||| ||||||||||||||||| ||||| |||||||||  ||||||||||||||||||||| || |||||  |||||||||| ||||||||  || |||    
T  11349598 gctttttgttactcaagtatactattacccaagttcaacagctaaactcatttcaacctcaagcatagagt--agagaataagaaccataagtggtagga 11349501  T
Q  814 -aaagctctaaaggtaaata 832  Q
     |||||||||||||||||||    
T  11349500 gaaagctctaaaggtaaata 11349481  T

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Target: chr4 (Bit Score: 44; Significance: 0.000000000000001; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 572 - 627
Target Start/End: Complemental strand, 51030882 - 51030827
Alignment:
Q  572 agtgtgatgtaaatagagatgaagaatatttcttatattttgatttcaaagaaaat 627  Q
    |||||||||||| ||||||||| |||||| ||||||||||||||||||||||||||    
T  51030882 agtgtgatgtaagtagagatgatgaatatgtcttatattttgatttcaaagaaaat 51030827  T

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Target: chr4; HSP #2
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 702 - 832
Target Start/End: Complemental strand, 51030751 - 51030619
Alignment:
Q  702 acttatttgatattggctttgtgttactcaagtatact-ttacctaagttcaacctctaaactcatttcaacctcaacca-agagtggagagaataag-a 798  Q
    ||||||||  |||| ||||||||||||||||||||||| ||||| |||||||||   |||||||||||||| || || || |||||  |||||||||| |    
T  51030751 acttattttttatttgctttgtgttactcaagtatactattacccaagttcaacagttaaactcatttcaagctgaagcatagagt--agagaataagaa 51030654  T
Q  799 ccataaggagtggga-aaagctctaaaggtaaata 832  Q
    ||| |||| |||| | |||||||||||||||||||    
T  51030653 ccacaaggggtggaagaaagctctaaaggtaaata 51030619  T

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Target: chr4; HSP #3
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 363 - 429
Target Start/End: Complemental strand, 51031086 - 51031020
Alignment:
Q  363 taagaaaaatagggagccatcgaggtcatcctttgaccgtggcctaaatgtaaatcctcacagcact 429  Q
    |||| |||||||||||||||| | |||| |||||| | |||||||||||| ||||||||||| ||||    
T  51031086 taaggaaaatagggagccatctatgtcaccctttggcagtggcctaaatgcaaatcctcacatcact 51031020  T

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Target: chr8 (Bit Score: 43; Significance: 0.000000000000005; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 572 - 634
Target Start/End: Complemental strand, 21350101 - 21350039
Alignment:
Q  572 agtgtgatgtaaatagagatgaagaatatttcttatattttgatttcaaagaaaatagtttgg 634  Q
    |||||||||||||||||||||| | | || ||||||||||||||||||||||||||| |||||    
T  21350101 agtgtgatgtaaatagagatgatgtacatgtcttatattttgatttcaaagaaaataatttgg 21350039  T

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Target: chr8; HSP #2
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 369 - 468
Target Start/End: Complemental strand, 21350301 - 21350203
Alignment:
Q  369 aaatagggagccatcgaggtcatcctttgaccgtggcctaaatgtaaatcctcacagcactggcacgaaattatgaaggaaagggggcataaggtttttg 468  Q
    |||||||| ||||||||||||| ||||||||  | ||||||||| ||||| ||| |||||| |||| |||| ||  ||| ||||||||||||||||||||    
T  21350301 aaatagggtgccatcgaggtcaccctttgactatagcctaaatgcaaatcttcatagcactcgcacaaaatgatagagg-aagggggcataaggtttttg 21350203  T

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