View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4972-Insertion-3 (Length: 828)
Name: NF4972-Insertion-3
Description: NF4972
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4972-Insertion-3 |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 697; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 697; E-Value: 0
Query Start/End: Original strand, 8 - 828
Target Start/End: Complemental strand, 26035284 - 26034464
Alignment:
| Q |
8 |
ctgctcctgccagagccacaacaatgcttgaaattataattgctgactttagtttatccaaatattccttcttttctatttgttttttcttctgtttggc |
107 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
26035284 |
ctgctcctgccagagccacaacaatgcttgaaattataattgctgactttagtttatccaaatattccttcttttctatttgttttttcttctgtttgtc |
26035185 |
T |
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| Q |
108 |
tgtagcttcctccttcaatcaataagcaccatggtacnnnnnnnntaaggtatatattagttcttcagtcatgttccataattccatctagaaattgnnn |
207 |
Q |
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| T |
26035184 |
tgtagcttcctccttcaatcaataagcaccatggtacaaaaaaa-taaggtatatattagttcttcagtcatgttccataattccatctaggaattgaaa |
26035086 |
T |
|
| Q |
208 |
nnnnnn-tctatgaacaccgacatcagatatgacaccggcgacactgacacatataataatttgaaaaatgaaagtaattgaatgtaatctgtttgccgg |
306 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
26035085 |
aaaaaaatctatgaacaccgacatcagatatgacaccggcgacactgacacatgtaataatttaaaaaatgaaagtaattgaatgtaatctgtttgccgg |
26034986 |
T |
|
| Q |
307 |
tgtccgaacaaacttaacatcagtgttgcatagaaaaaacaatcaatgcatgtaccttaatttccttggaggcagcaacttcagaagatataggatcaac |
406 |
Q |
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|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26034985 |
tgtccgaacaaacttaacgtcagtgttgcatagaaaaaacaatcaatgcatgtaccttaatttccttggaggcagcaacttcagaagatataggatcaac |
26034886 |
T |
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| Q |
407 |
ttgaacctcagtattattcccaggattcagttctgcagcaatatctgcagatggaaacgtttcgtctgagttttcaggtgagctagccatatttccttct |
506 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||| |
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| T |
26034885 |
ttgaacctcagtattattcccaggattcagttctgcagcaatatctgcagatggaaacgtttcgtctgagttctcagttgagctagccatatttccttct |
26034786 |
T |
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| Q |
507 |
atagctatcaagcaatgttactctaacgttgttatggaataatggtgtgggagagaaaagagaagagaaattaagaaataatgaatcaaaacattatcaa |
606 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26034785 |
atagctatcaagcaatgttactctaacgttgttatggaataatggtgtgggagagaaaagagaagagaaattaagaaataatgaatcaaaacattatcaa |
26034686 |
T |
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| Q |
607 |
ggatcaatgccnnnnnnngttgttaattttaaattgacacgtgccagtgttccgaattatgaggatgttatagctttcttgttctcaaacttgccgatat |
706 |
Q |
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| T |
26034685 |
ggatcaatgccaaaaaaagttgttaattttaaattgacacgtgctagtgttccgaattatgaggatgttatagctttcttgttctcaaacttgccgatat |
26034586 |
T |
|
| Q |
707 |
acttgttcagacatgcctcaacttgtggtactaatatagtacattactttacctacaagaaaaacaaatcaacaaaaacaggaaacatgtatactattaa |
806 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
26034585 |
acttgttcagacatgcctcaacttgtggtactaatatagtacattactttacctacaagaaaaacaaatcaacaaaaacaggaaacaggtatactattaa |
26034486 |
T |
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| Q |
807 |
tagaccttgtttccactttctt |
828 |
Q |
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|||| ||||||||||||||||| |
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| T |
26034485 |
tagaacttgtttccactttctt |
26034464 |
T |
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Back To:
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Target: chr7 (Bit Score: 33; Significance: 0.000000005; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 260 - 296
Target Start/End: Complemental strand, 45909012 - 45908976
Alignment:
| Q |
260 |
ataataatttgaaaaatgaaagtaattgaatgtaatc |
296 |
Q |
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| T |
45909012 |
ataataatttgagaaatgaaagtaattgaatgtaatc |
45908976 |
T |
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