View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4972-Insertion-4 (Length: 240)
Name: NF4972-Insertion-4
Description: NF4972
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4972-Insertion-4 |
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| [»] chr4 (1 HSPs) |
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| [»] chr1 (1 HSPs) |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 225; Significance: 1e-124; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 8 - 240
Target Start/End: Original strand, 15026220 - 15026452
Alignment:
| Q |
8 |
gtgaccaaccatatgtaaatgtactaaatcttgaaataataataatgtttgtgtgtatatattctgattaaataactaaaatgcaggcacaatacttgaa |
107 |
Q |
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| T |
15026220 |
gtgaccaaccatatgtaaatgtactaaatcttgaaataataataatgtttgtgtgtatatattctgattaaataactaaaatgtaggcacaatacttgaa |
15026319 |
T |
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| Q |
108 |
aaacgatccagattacatgagctgcaaaaagaaagaatgcaagaaagaacagaatgggaaatgcagtgtgacaacttgtagtggttcaataaagtttcat |
207 |
Q |
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| T |
15026320 |
aaacgatccagattacatgagctgcaaaaagaaagaatgcaagaaagaacagaatgggaaatgcagtgtgacaacttgtagtggttcaataaagtttcat |
15026419 |
T |
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| Q |
208 |
gttatcaacattagaagtgatatagagtttgtg |
240 |
Q |
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| T |
15026420 |
gttatcaacattagaagtgatatagaatttgtg |
15026452 |
T |
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Target: chr1 (Bit Score: 102; Significance: 9e-51; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 102; E-Value: 9e-51
Query Start/End: Original strand, 87 - 240
Target Start/End: Original strand, 21365698 - 21365851
Alignment:
| Q |
87 |
aatgcaggcacaatacttgaaaaacgatccagattacatgagctgcaaaaagaaagaatgcaagaaagaacagaatgggaaatgcagtgtgacaacttgt |
186 |
Q |
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| T |
21365698 |
aatgtaggcacagtacttgaaaaacgatccagattacctaagttgcaaaaagaaagaatgcaagaaagagcttaatggaaaatgcattgtgacaacttgc |
21365797 |
T |
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| Q |
187 |
agtggttcaataaagtttcatgttatcaacattagaagtgatatagagtttgtg |
240 |
Q |
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| T |
21365798 |
agtggttcaataaagtttcatgttatcaacataagaagtgacatagagtttgtg |
21365851 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 62; Significance: 6e-27; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 143 - 240
Target Start/End: Original strand, 26695899 - 26695996
Alignment:
| Q |
143 |
aatgcaagaaagaacagaatgggaaatgcagtgtgacaacttgtagtggttcaataaagtttcatgttatcaacattagaagtgatatagagtttgtg |
240 |
Q |
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||||||||||||| | ||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||| |||||||| ||||| |||||| |
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| T |
26695899 |
aatgcaagaaagagcttaatgggaaatgcattgtgacaacttgtagtggttcaataaagtttcatgttacaaacataagaagtgacatagaatttgtg |
26695996 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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