View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4972-Insertion-5 (Length: 131)
Name: NF4972-Insertion-5
Description: NF4972
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4972-Insertion-5 |
 | |
|
| [»] scaffold0006 (1 HSPs) |
| | |
|
| [»] scaffold0069 (1 HSPs) |
| | |
|
| [»] scaffold0008 (1 HSPs) |
| | |
|
Alignment Details
Target: chr5 (Bit Score: 108; Significance: 1e-54; HSPs: 6)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 108; E-Value: 1e-54
Query Start/End: Original strand, 8 - 127
Target Start/End: Complemental strand, 23322293 - 23322174
Alignment:
| Q |
8 |
aaataggcacatgtgaacggtgacgtgacaacttgcaacatgtatccaccttagacattggattaacggttttgacggtggagatttatttgattgatgg |
107 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||| || |
|
|
| T |
23322293 |
aaataggcacatgtgaacggtgacgtgacaacttgcaacatgtatccaccttagacattggcttaacggttttgacggtggagatttatttgcttgacgg |
23322194 |
T |
|
| Q |
108 |
aagatgacttaaagggacca |
127 |
Q |
| |
|
|||||||||||||||||||| |
|
|
| T |
23322193 |
aagatgacttaaagggacca |
23322174 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 85; E-Value: 6e-41
Query Start/End: Original strand, 8 - 124
Target Start/End: Original strand, 25088931 - 25089047
Alignment:
| Q |
8 |
aaataggcacatgtgaacggtgacgtgacaacttgcaacatgtatccaccttagacattggattaacggttttgacggtggagatttatttgattgatgg |
107 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||||||| ||||| ||||||||||||||| ||||| |||||||||||||| ||||||||| ||||| | |
|
|
| T |
25088931 |
aaatacgcacatgtgaacggtgacgtgacaacttgcaacgtgtattcaccttagacattggcttaaccgttttgacggtggaaatttatttggttgatag |
25089030 |
T |
|
| Q |
108 |
aagatgacttaaaggga |
124 |
Q |
| |
|
||||||||||||||||| |
|
|
| T |
25089031 |
aagatgacttaaaggga |
25089047 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 85; E-Value: 6e-41
Query Start/End: Original strand, 8 - 124
Target Start/End: Original strand, 25146900 - 25147016
Alignment:
| Q |
8 |
aaataggcacatgtgaacggtgacgtgacaacttgcaacatgtatccaccttagacattggattaacggttttgacggtggagatttatttgattgatgg |
107 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||||||| ||||| ||||||||||||||| ||||| |||||||||||||| ||||||||| ||||| | |
|
|
| T |
25146900 |
aaatacgcacatgtgaacggtgacgtgacaacttgcaacgtgtattcaccttagacattggcttaaccgttttgacggtggaaatttatttggttgatag |
25146999 |
T |
|
| Q |
108 |
aagatgacttaaaggga |
124 |
Q |
| |
|
||||||||||||||||| |
|
|
| T |
25147000 |
aagatgacttaaaggga |
25147016 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 81; E-Value: 2e-38
Query Start/End: Original strand, 8 - 124
Target Start/End: Complemental strand, 5841072 - 5840956
Alignment:
| Q |
8 |
aaataggcacatgtgaacggtgacgtgacaacttgcaacatgtatccaccttagacattggattaacggttttgacggtggagatttatttgattgatgg |
107 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||| |||||||||| |||| || |
|
|
| T |
5841072 |
aaataggaacatgtgaacggtgacgtgacaacttgcaatgcatatccaccttagacattggcttaacggttttgacggtggggatttatttggttgacgg |
5840973 |
T |
|
| Q |
108 |
aagatgacttaaaggga |
124 |
Q |
| |
|
||||||||||||||||| |
|
|
| T |
5840972 |
aagatgacttaaaggga |
5840956 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 70; E-Value: 6e-32
Query Start/End: Original strand, 8 - 125
Target Start/End: Complemental strand, 15933551 - 15933434
Alignment:
| Q |
8 |
aaataggcacatgtgaacggtgacgtgacaacttgcaacatgtatccaccttagacattggattaacggttttgacggtggagatttatttgattgatgg |
107 |
Q |
| |
|
||||| || ||||||||||||||||||||||||||||| | ||||||||||| ||||||| ||||||||||||||||||| |||||||||| |||| || |
|
|
| T |
15933551 |
aaatatgcgcatgtgaacggtgacgtgacaacttgcaatgtttatccaccttaaacattgggttaacggttttgacggtggggatttatttggttgacgg |
15933452 |
T |
|
| Q |
108 |
aagatgacttaaagggac |
125 |
Q |
| |
|
||||| ||||||||||| |
|
|
| T |
15933451 |
aagatagcttaaagggac |
15933434 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 56; E-Value: 1e-23
Query Start/End: Original strand, 16 - 119
Target Start/End: Original strand, 42793649 - 42793752
Alignment:
| Q |
16 |
acatgtgaacggtgacgtgacaacttgcaacatgtatccaccttagacattggattaacggttttgacggtggagatttatttgattgatggaagatgac |
115 |
Q |
| |
|
||||||||||||||| |||||||||||||| |||||||| ||||||||||||||||||| ||||||| ||| | ||||||||| |||| |||||| || |
|
|
| T |
42793649 |
acatgtgaacggtgatgtgacaacttgcaatgtgtatccatcttagacattggattaacgattttgactgtgaaaatttatttggttgacagaagataac |
42793748 |
T |
|
| Q |
116 |
ttaa |
119 |
Q |
| |
|
|||| |
|
|
| T |
42793749 |
ttaa |
42793752 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 92; Significance: 4e-45; HSPs: 5)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 92; E-Value: 4e-45
Query Start/End: Original strand, 8 - 127
Target Start/End: Complemental strand, 5367610 - 5367491
Alignment:
| Q |
8 |
aaataggcacatgtgaacggtgacgtgacaacttgcaacatgtatccaccttagacattggattaacggttttgacggtggagatttatttgattgatgg |
107 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||| |||| | |
|
|
| T |
5367610 |
aaataggcacatgtgaacggtgacgtgacaacttgcaatgtgtatccaccttagacattgggttaacggttttgacggtggagatttatttggttgacag |
5367511 |
T |
|
| Q |
108 |
aagatgacttaaagggacca |
127 |
Q |
| |
|
|||||||||||||| ||||| |
|
|
| T |
5367510 |
aagatgacttaaagagacca |
5367491 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 89; E-Value: 3e-43
Query Start/End: Original strand, 8 - 124
Target Start/End: Complemental strand, 3659147 - 3659031
Alignment:
| Q |
8 |
aaataggcacatgtgaacggtgacgtgacaacttgcaacatgtatccaccttagacattggattaacggttttgacggtggagatttatttgattgatgg |
107 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||| ||||||||||||||| || |||| || |
|
|
| T |
3659147 |
aaataggcacatgtgaacggtgacgtgacaacttgcaatgtgtatccaccttagacattgggttaacggttttaacggtggagatttatctggttgacgg |
3659048 |
T |
|
| Q |
108 |
aagatgacttaaaggga |
124 |
Q |
| |
|
||||||||||||||||| |
|
|
| T |
3659047 |
aagatgacttaaaggga |
3659031 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 65; E-Value: 5e-29
Query Start/End: Original strand, 8 - 104
Target Start/End: Complemental strand, 28944440 - 28944344
Alignment:
| Q |
8 |
aaataggcacatgtgaacggtgacgtgacaacttgcaacatgtatccaccttagacattggattaacggttttgacggtggagatttatttgattga |
104 |
Q |
| |
|
|||||| ||||||||||| ||||||| ||||||||||| ||||| ||||||||||||| |||||||||||||||||||||||||||||||| |||| |
|
|
| T |
28944440 |
aaatagacacatgtgaacagtgacgttacaacttgcaatgtgtattcaccttagacattagattaacggttttgacggtggagatttatttggttga |
28944344 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 34; E-Value: 0.0000000002
Query Start/End: Original strand, 38 - 119
Target Start/End: Complemental strand, 8286952 - 8286871
Alignment:
| Q |
38 |
acttgcaacatgtatccaccttagacattggattaacggttttgacggtggagatttatttgattgatggaagatgacttaa |
119 |
Q |
| |
|
|||||||| ||||||||||||||||||| ||||||||| | ||||||| |||||||||| |||| |||||| |||||| |
|
|
| T |
8286952 |
acttgcaatgtgtatccaccttagacattttgttaacggttctaacggtggggatttatttggttgacagaagataacttaa |
8286871 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 30; E-Value: 0.00000004
Query Start/End: Original strand, 70 - 119
Target Start/End: Original strand, 8287369 - 8287418
Alignment:
| Q |
70 |
ttaacggttttgacggtggagatttatttgattgatggaagatgacttaa |
119 |
Q |
| |
|
||||| ||||||||| |||||||||||||| |||| ||||||| |||||| |
|
|
| T |
8287369 |
ttaacagttttgacgatggagatttatttggttgacggaagataacttaa |
8287418 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 89; Significance: 3e-43; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 89; E-Value: 3e-43
Query Start/End: Original strand, 8 - 120
Target Start/End: Complemental strand, 18202968 - 18202856
Alignment:
| Q |
8 |
aaataggcacatgtgaacggtgacgtgacaacttgcaacatgtatccaccttagacattggattaacggttttgacggtggagatttatttgattgatgg |
107 |
Q |
| |
|
|||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
18202968 |
aaatagacacatgtgaacggtgacgtgacaacttgcaacgtgtatccaccttagacattgacttaacggttttgacggtggagatttatttgcttgatgg |
18202869 |
T |
|
| Q |
108 |
aagatgacttaaa |
120 |
Q |
| |
|
||||| ||||||| |
|
|
| T |
18202868 |
aagattacttaaa |
18202856 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 80; E-Value: 6e-38
Query Start/End: Original strand, 8 - 127
Target Start/End: Original strand, 30905867 - 30905986
Alignment:
| Q |
8 |
aaataggcacatgtgaacggtgacgtgacaacttgcaacatgtatccaccttagacattggattaacggttttgacggtggagatttatttgattgatgg |
107 |
Q |
| |
|
||||||||| |||||||||||||| ||||||||||||| |||| |||||||||||||||| |||||||||||||||||| |||||||||| |||| || |
|
|
| T |
30905867 |
aaataggcatatgtgaacggtgacatgacaacttgcaatgtgtacccaccttagacattggcttaacggttttgacggtgatgatttatttggttgacgg |
30905966 |
T |
|
| Q |
108 |
aagatgacttaaagggacca |
127 |
Q |
| |
|
|||||||||||||||||||| |
|
|
| T |
30905967 |
aagatgacttaaagggacca |
30905986 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 88; Significance: 1e-42; HSPs: 11)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 88; E-Value: 1e-42
Query Start/End: Original strand, 8 - 127
Target Start/End: Complemental strand, 10468675 - 10468556
Alignment:
| Q |
8 |
aaataggcacatgtgaacggtgacgtgacaacttgcaacatgtatccaccttagacattggattaacggttttgacggtggagatttatttgattgatgg |
107 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||| ||||||||||||||||||| ||||||||| |||| || |
|
|
| T |
10468675 |
aaataggcacatgtgaacggtgacgtgacaacttgcaatgtgtatccaccttagatattgggttaacggttttgacggtgggaatttatttggttgacgg |
10468576 |
T |
|
| Q |
108 |
aagatgacttaaagggacca |
127 |
Q |
| |
|
|||||||||||||||||||| |
|
|
| T |
10468575 |
aagatgacttaaagggacca |
10468556 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 76; E-Value: 1e-35
Query Start/End: Original strand, 8 - 127
Target Start/End: Original strand, 52677693 - 52677812
Alignment:
| Q |
8 |
aaataggcacatgtgaacggtgacgtgacaacttgcaacatgtatccaccttagacattggattaacggttttgacggtggagatttatttgattgatgg |
107 |
Q |
| |
|
|||||||||||||||||| || |||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||| |||| | |
|
|
| T |
52677693 |
aaataggcacatgtgaactgttacgtgacaacttgcaatgtgtatccaccttagacattggattaacggttttgacggtgagaatttatttggttgacgt |
52677792 |
T |
|
| Q |
108 |
aagatgacttaaagggacca |
127 |
Q |
| |
|
||||| |||||||||||||| |
|
|
| T |
52677793 |
aagataacttaaagggacca |
52677812 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 73; E-Value: 9e-34
Query Start/End: Original strand, 8 - 124
Target Start/End: Complemental strand, 12585353 - 12585237
Alignment:
| Q |
8 |
aaataggcacatgtgaacggtgacgtgacaacttgcaacatgtatccaccttagacattggattaacggttttgacggtggagatttatttgattgatgg |
107 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||| |||||||| ||| ||||||||| |||| | |
|
|
| T |
12585353 |
aaataggcacatgtgaacggtgacgtgacaacttgcaatgtgtatccaccttagacattggtttaacagttttgacagtgaggatttattttgttgacga |
12585254 |
T |
|
| Q |
108 |
aagatgacttaaaggga |
124 |
Q |
| |
|
||||||||||||||||| |
|
|
| T |
12585253 |
aagatgacttaaaggga |
12585237 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 70; E-Value: 6e-32
Query Start/End: Original strand, 8 - 125
Target Start/End: Original strand, 21038255 - 21038372
Alignment:
| Q |
8 |
aaataggcacatgtgaacggtgacgtgacaacttgcaacatgtatccaccttagacattggattaacggttttgacggtggagatttatttgattgatgg |
107 |
Q |
| |
|
||||| ||||||| |||| |||||| |||||||||||| | |||||||| |||||||||| |||||||||||||||||||||||||||||| |||| || |
|
|
| T |
21038255 |
aaatatgcacatgagaacagtgacgcgacaacttgcaatgtatatccaccatagacattggcttaacggttttgacggtggagatttatttggttgacgg |
21038354 |
T |
|
| Q |
108 |
aagatgacttaaagggac |
125 |
Q |
| |
|
||||||||||||| |||| |
|
|
| T |
21038355 |
aagatgacttaaatggac |
21038372 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 69; E-Value: 2e-31
Query Start/End: Original strand, 8 - 120
Target Start/End: Complemental strand, 3990870 - 3990758
Alignment:
| Q |
8 |
aaataggcacatgtgaacggtgacgtgacaacttgcaacatgtatccaccttagacattggattaacggttttgacggtggagatttatttgattgatgg |
107 |
Q |
| |
|
|||||||||| || |||| |||| |||||||||||||| ||||||||||||||||||||| ||||||||||||||||||| ||||||||| |||| || |
|
|
| T |
3990870 |
aaataggcacgtgcgaaccgtgatgtgacaacttgcaatgtgtatccaccttagacattggcttaacggttttgacggtgggaatttatttggttgacgg |
3990771 |
T |
|
| Q |
108 |
aagatgacttaaa |
120 |
Q |
| |
|
||||||||||||| |
|
|
| T |
3990770 |
aagatgacttaaa |
3990758 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 69; E-Value: 2e-31
Query Start/End: Original strand, 8 - 124
Target Start/End: Complemental strand, 10286605 - 10286489
Alignment:
| Q |
8 |
aaataggcacatgtgaacggtgacgtgacaacttgcaacatgtatccaccttagacattggattaacggttttgacggtggagatttatttgattgatgg |
107 |
Q |
| |
|
||||||||| |||||||| ||||||||||||||||||| | ||| |||||||||||||| |||||||||||||||||||| | ||||||| |||| || |
|
|
| T |
10286605 |
aaataggcagatgtgaacagtgacgtgacaacttgcaatgtttattcaccttagacattgatttaacggttttgacggtggaaaattatttggttgaagg |
10286506 |
T |
|
| Q |
108 |
aagatgacttaaaggga |
124 |
Q |
| |
|
||||||||||||||||| |
|
|
| T |
10286505 |
aagatgacttaaaggga |
10286489 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 64; E-Value: 2e-28
Query Start/End: Original strand, 8 - 127
Target Start/End: Original strand, 16067465 - 16067584
Alignment:
| Q |
8 |
aaataggcacatgtgaacggtgacgtgacaacttgcaacatgtatccaccttagacattggattaacggttttgacggtggagatttatttgattgatgg |
107 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| | |||||||| |||||||||||| |||||||||||||| ||| ||||||||| || || |
|
|
| T |
16067465 |
aaataggcacatgtgaacggtgacgtgacaacttgcgatgtgtatccatcttagacattggcttaacggttttgacagtgagaatttatttggttagcgg |
16067564 |
T |
|
| Q |
108 |
aagatgacttaaagggacca |
127 |
Q |
| |
|
|||||||||||| ||||||| |
|
|
| T |
16067565 |
aagatgacttaaggggacca |
16067584 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #8
Raw Score: 61; E-Value: 1e-26
Query Start/End: Original strand, 31 - 127
Target Start/End: Complemental strand, 36098917 - 36098821
Alignment:
| Q |
31 |
cgtgacaacttgcaacatgtatccaccttagacattggattaacggttttgacggtggagatttatttgattgatggaagatgacttaaagggacca |
127 |
Q |
| |
|
||||||| ||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||| |||| ||||||| ||||||||||||| |
|
|
| T |
36098917 |
cgtgacagcttgcaatgtgtatccaccttagatattggattaacggttttgacggtggagatttatttagttgacggaagatagcttaaagggacca |
36098821 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #9
Raw Score: 60; E-Value: 5e-26
Query Start/End: Original strand, 16 - 127
Target Start/End: Complemental strand, 49028450 - 49028339
Alignment:
| Q |
16 |
acatgtgaacggtgacgtgacaacttgcaacatgtatccaccttagacattggattaacggttttgacggtggagatttatttgattgatggaagatgac |
115 |
Q |
| |
|
|||||||||| |||| |||||||||| ||| ||||||||| |||||||||| ||||||||||||||||||| |||||||||| |||| ||||||| | |
|
|
| T |
49028450 |
acatgtgaacagtgatgtgacaacttacaatgtgtatccactttagacattgagttaacggttttgacggtggggatttatttggttgacggaagatagc |
49028351 |
T |
|
| Q |
116 |
ttaaagggacca |
127 |
Q |
| |
|
|||||||||||| |
|
|
| T |
49028350 |
ttaaagggacca |
49028339 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #10
Raw Score: 59; E-Value: 2e-25
Query Start/End: Original strand, 16 - 122
Target Start/End: Original strand, 9268172 - 9268278
Alignment:
| Q |
16 |
acatgtgaacggtgacgtgacaacttgcaacatgtatccaccttagacattggattaacggttttgacggtggagatttatttgattgatggaagatgac |
115 |
Q |
| |
|
|||||||||||||| ||||||||||||||| || |||||||||||||| |||| ||||||||||||| ||||| |||||||| | ||| |||||||| || |
|
|
| T |
9268172 |
acatgtgaacggtggcgtgacaacttgcaatatatatccaccttagacgttggcttaacggttttgatggtggggatttattcggttgctggaagataac |
9268271 |
T |
|
| Q |
116 |
ttaaagg |
122 |
Q |
| |
|
|||||| |
|
|
| T |
9268272 |
ctaaagg |
9268278 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #11
Raw Score: 57; E-Value: 3e-24
Query Start/End: Original strand, 8 - 120
Target Start/End: Original strand, 622198 - 622310
Alignment:
| Q |
8 |
aaataggcacatgtgaacggtgacgtgacaacttgcaacatgtatccaccttagacattggattaacggttttgacggtggagatttatttgattgatgg |
107 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||| | ||||| |||||||||||| |||||||| ||||| | || |||||||||| |||||| |
|
|
| T |
622198 |
aaatagacacatgtgaacggtgacgtgacaacttgcaattagaatccatcttagacattggcttaacggtgttgacagaggggatttatttggttgatga |
622297 |
T |
|
| Q |
108 |
aagatgacttaaa |
120 |
Q |
| |
|
|| |||||||||| |
|
|
| T |
622298 |
aaaatgacttaaa |
622310 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 86; Significance: 2e-41; HSPs: 9)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 86; E-Value: 2e-41
Query Start/End: Original strand, 16 - 125
Target Start/End: Original strand, 18026000 - 18026109
Alignment:
| Q |
16 |
acatgtgaacggtgacgtgacaacttgcaacatgtatccaccttagacattggattaacggttttgacggtggagatttatttgattgatggaagatgac |
115 |
Q |
| |
|
|||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| | |
|
|
| T |
18026000 |
acatgtgaacggtgacgtgacagcttgcaatgtgtatccaccttagacattggattaacggttttgacggtggagatttatttgattgacagaagatggc |
18026099 |
T |
|
| Q |
116 |
ttaaagggac |
125 |
Q |
| |
|
|||||||||| |
|
|
| T |
18026100 |
ttaaagggac |
18026109 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 84; E-Value: 2e-40
Query Start/End: Original strand, 11 - 122
Target Start/End: Original strand, 27864943 - 27865054
Alignment:
| Q |
11 |
taggcacatgtgaacggtgacgtgacaacttgcaacatgtatccaccttagacattggattaacggttttgacggtggagatttatttgattgatggaag |
110 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |||||||||||||| |||||| ||||||||||||||||||| |||||||||| |||| ||||| |
|
|
| T |
27864943 |
taggcacatgtgaacggtgacgtgacaacttgcaatgtgtatccaccttagtcattgggttaacggttttgacggtggggatttatttggttgacggaag |
27865042 |
T |
|
| Q |
111 |
atgacttaaagg |
122 |
Q |
| |
|
|||||||||||| |
|
|
| T |
27865043 |
atgacttaaagg |
27865054 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 76; E-Value: 1e-35
Query Start/End: Original strand, 8 - 127
Target Start/End: Complemental strand, 3171684 - 3171565
Alignment:
| Q |
8 |
aaataggcacatgtgaacggtgacgtgacaacttgcaacatgtatccaccttagacattggattaacggttttgacggtggagatttatttgattgatgg |
107 |
Q |
| |
|
||||| |||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||| |||||| |||| || |
|
|
| T |
3171684 |
aaataagcacatgtgaacaatgacgtgacaacttgcagtgtgtatccaccttagacattggattaacggttttgacggtggggatgtatttggttgacgg |
3171585 |
T |
|
| Q |
108 |
aagatgacttaaagggacca |
127 |
Q |
| |
|
||||| |||||||||||||| |
|
|
| T |
3171584 |
aagataacttaaagggacca |
3171565 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 75; E-Value: 6e-35
Query Start/End: Original strand, 8 - 122
Target Start/End: Complemental strand, 19860685 - 19860571
Alignment:
| Q |
8 |
aaataggcacatgtgaacggtgacgtgacaacttgcaacatgtatccaccttagacattggattaacggttttgacggtggagatttatttgattgatgg |
107 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| | |||||||| ||||||||||| |||||||||||||||||||||| ||||||| |||| || |
|
|
| T |
19860685 |
aaataggcacatgtgaacggtgacgtgacaacttgcgatgtgtatccaatttagacattggcttaacggttttgacggtggagaattatttggttgacgg |
19860586 |
T |
|
| Q |
108 |
aagatgacttaaagg |
122 |
Q |
| |
|
||||| ||||||||| |
|
|
| T |
19860585 |
aagatcacttaaagg |
19860571 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 72; E-Value: 4e-33
Query Start/End: Original strand, 8 - 127
Target Start/End: Original strand, 24107292 - 24107411
Alignment:
| Q |
8 |
aaataggcacatgtgaacggtgacgtgacaacttgcaacatgtatccaccttagacattggattaacggttttgacggtggagatttatttgattgatgg |
107 |
Q |
| |
|
|||||||||||||||||||| || |||||||||||||| ||||||| ||||||||||||| ||||||||||||||||||| ||||||||| || | || |
|
|
| T |
24107292 |
aaataggcacatgtgaacggcgaagtgacaacttgcaatgtgtatcctccttagacattggcttaacggttttgacggtgggaatttatttggttaacgg |
24107391 |
T |
|
| Q |
108 |
aagatgacttaaagggacca |
127 |
Q |
| |
|
|||||||||||| ||||||| |
|
|
| T |
24107392 |
aagatgacttaacgggacca |
24107411 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 70; E-Value: 6e-32
Query Start/End: Original strand, 8 - 125
Target Start/End: Complemental strand, 38758803 - 38758686
Alignment:
| Q |
8 |
aaataggcacatgtgaacggtgacgtgacaacttgcaacatgtatccaccttagacattggattaacggttttgacggtggagatttatttgattgatgg |
107 |
Q |
| |
|
||||||| |||||||||||| || |||||||||||||| ||||||||||||||||||||| |||||||||||||| ||||| ||||||||| | || || |
|
|
| T |
38758803 |
aaataggaacatgtgaacggcgatgtgacaacttgcaatgtgtatccaccttagacattgggttaacggttttgacagtggaaatttatttggtagaggg |
38758704 |
T |
|
| Q |
108 |
aagatgacttaaagggac |
125 |
Q |
| |
|
||||| |||||||||||| |
|
|
| T |
38758703 |
aagataacttaaagggac |
38758686 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 61; E-Value: 1e-26
Query Start/End: Original strand, 19 - 127
Target Start/End: Complemental strand, 54446199 - 54446096
Alignment:
| Q |
19 |
tgtgaacggtgacgtgacaacttgcaacatgtatccaccttagacattggattaacggttttgacggtggagatttatttgattgatggaagatgactta |
118 |
Q |
| |
|
||||||||||||||||||||| || ||||||||||||||||||||| |||||||||||||||||| ||||||||| |||| ||||||||||||| |
|
|
| T |
54446199 |
tgtgaacggtgacgtgacaacatg-----tgtatccaccttagacattggcttaacggttttgacggtgagaatttatttgtttgacggaagatgactta |
54446105 |
T |
|
| Q |
119 |
aagggacca |
127 |
Q |
| |
|
||||||||| |
|
|
| T |
54446104 |
aagggacca |
54446096 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #8
Raw Score: 58; E-Value: 8e-25
Query Start/End: Original strand, 12 - 97
Target Start/End: Original strand, 14812572 - 14812657
Alignment:
| Q |
12 |
aggcacatgtgaacggtgacgtgacaacttgcaacatgtatccaccttagacattggattaacggttttgacggtggagatttatt |
97 |
Q |
| |
|
|||||| ||||||||||||||||||||||| ||| |||||| |||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
14812572 |
aggcacgtgtgaacggtgacgtgacaacttacaatgtgtatctaccttagacattggcctaacggttttgacggtggagatttatt |
14812657 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #9
Raw Score: 37; E-Value: 0.000000000003
Query Start/End: Original strand, 51 - 119
Target Start/End: Original strand, 46685450 - 46685518
Alignment:
| Q |
51 |
atccaccttagacattggattaacggttttgacggtggagatttatttgattgatggaagatgacttaa |
119 |
Q |
| |
|
||||||||||||||||| |||||||||| ||||||| |||||||||| |||| ||||||| |||||| |
|
|
| T |
46685450 |
atccaccttagacattgtgttaacggtttcgacggtgtggatttatttggttgacggaagataacttaa |
46685518 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 78; Significance: 9e-37; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 78; E-Value: 9e-37
Query Start/End: Original strand, 8 - 121
Target Start/End: Original strand, 8905780 - 8905893
Alignment:
| Q |
8 |
aaataggcacatgtgaacggtgacgtgacaacttgcaacatgtatccaccttagacattggattaacggttttgacggtggagatttatttgattgatgg |
107 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||| | ||||||||| |||| || |
|
|
| T |
8905780 |
aaataggcacatgtgaacggtgacgtgacaacttgcaatgtgtatccaccttagacattgacttaacggttttgacggtaggaatttatttggttgacgg |
8905879 |
T |
|
| Q |
108 |
aagatgacttaaag |
121 |
Q |
| |
|
|||||||||||||| |
|
|
| T |
8905880 |
aagatgacttaaag |
8905893 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 76; E-Value: 1e-35
Query Start/End: Original strand, 8 - 127
Target Start/End: Complemental strand, 4265171 - 4265052
Alignment:
| Q |
8 |
aaataggcacatgtgaacggtgacgtgacaacttgcaacatgtatccaccttagacattggattaacggttttgacggtggagatttatttgattgatgg |
107 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||| ||||||||||||||||||| |||||||||| |||| || |
|
|
| T |
4265171 |
aaataggcacatgtgaacggtgacgtgacaacttgcaatgtgtatccactttagacattgggttaacggttttgacggtggggatttatttggttgacgg |
4265072 |
T |
|
| Q |
108 |
aagatgacttaaagggacca |
127 |
Q |
| |
|
|| || ||||||| ||||| |
|
|
| T |
4265071 |
aaaatagcttaaagagacca |
4265052 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 74; Significance: 2e-34; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 74; E-Value: 2e-34
Query Start/End: Original strand, 8 - 125
Target Start/End: Complemental strand, 37499367 - 37499250
Alignment:
| Q |
8 |
aaataggcacatgtgaacggtgacgtgacaacttgcaacatgtatccaccttagacattggattaacggttttgacggtggagatttatttgattgatgg |
107 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||| || |||||||||||||||||| | ||||||||| || | | |
|
|
| T |
37499367 |
aaataggcacatgtgaacggtgacgtgacaacttgcaatgtgtatccaccttagacactgacttaacggttttgacggtgaaaatttatttggttaacag |
37499268 |
T |
|
| Q |
108 |
aagatgacttaaagggac |
125 |
Q |
| |
|
|||||||||||||||||| |
|
|
| T |
37499267 |
aagatgacttaaagggac |
37499250 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 42; E-Value: 0.000000000000003
Query Start/End: Original strand, 62 - 127
Target Start/End: Original strand, 30335123 - 30335188
Alignment:
| Q |
62 |
acattggattaacggttttgacggtggagatttatttgattgatggaagatgacttaaagggacca |
127 |
Q |
| |
|
||||||| |||||||||||||||||||| ||||||||| ||||| ||||||||||||||| |||| |
|
|
| T |
30335123 |
acattggcttaacggttttgacggtggaaatttatttggttgatcaaagatgacttaaaggaacca |
30335188 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0006 (Bit Score: 73; Significance: 9e-34; HSPs: 1)
Name: scaffold0006
Description:
Target: scaffold0006; HSP #1
Raw Score: 73; E-Value: 9e-34
Query Start/End: Original strand, 8 - 112
Target Start/End: Original strand, 93772 - 93876
Alignment:
| Q |
8 |
aaataggcacatgtgaacggtgacgtgacaacttgcaacatgtatccaccttagacattggattaacggttttgacggtggagatttatttgattgatgg |
107 |
Q |
| |
|
|||||||||||||||||||||||||| |||||||||||| | |||| |||||||||||||||||||||||||||||||||| |||||||||| || | || |
|
|
| T |
93772 |
aaataggcacatgtgaacggtgacgtaacaacttgcaacgtatatctaccttagacattggattaacggttttgacggtggggatttatttggttaacgg |
93871 |
T |
|
| Q |
108 |
aagat |
112 |
Q |
| |
|
||||| |
|
|
| T |
93872 |
aagat |
93876 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 68; Significance: 9e-31; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 68; E-Value: 9e-31
Query Start/End: Original strand, 8 - 127
Target Start/End: Complemental strand, 38695083 - 38694964
Alignment:
| Q |
8 |
aaataggcacatgtgaacggtgacgtgacaacttgcaacatgtatccaccttagacattggattaacggttttgacggtggagatttatttgattgatgg |
107 |
Q |
| |
|
||||||||||||||||||||||| |||||||||| ||| ||||||||| |||||||||| ||||||||||||||||||| |||||||||| |||| || |
|
|
| T |
38695083 |
aaataggcacatgtgaacggtgatgtgacaacttacaatgtgtatccactttagacattgagttaacggttttgacggtggggatttatttggttgacgg |
38694984 |
T |
|
| Q |
108 |
aagatgacttaaagggacca |
127 |
Q |
| |
|
|| || ||||||||||||| |
|
|
| T |
38694983 |
aaaatagcttaaagggacca |
38694964 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 67; E-Value: 3e-30
Query Start/End: Original strand, 13 - 127
Target Start/End: Original strand, 18171226 - 18171340
Alignment:
| Q |
13 |
ggcacatgtgaacggtgacgtgacaacttgcaacatgtatccaccttagacattggattaacggttttgacggtggagatttatttgattgatggaagat |
112 |
Q |
| |
|
|||||| |||||||||||| ||||||||||||| ||| ||||||||||||||||| ||||||||||||||||||| ||||||||| |||| ||||||| |
|
|
| T |
18171226 |
ggcacacgtgaacggtgacatgacaacttgcaatgtgtgtccaccttagacattggtttaacggttttgacggtgggaatttatttggttgacggaagat |
18171325 |
T |
|
| Q |
113 |
gacttaaagggacca |
127 |
Q |
| |
|
||||| || |||||| |
|
|
| T |
18171326 |
gacttgaaaggacca |
18171340 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 60; E-Value: 5e-26
Query Start/End: Original strand, 8 - 127
Target Start/End: Original strand, 42962909 - 42963028
Alignment:
| Q |
8 |
aaataggcacatgtgaacggtgacgtgacaacttgcaacatgtatccaccttagacattggattaacggttttgacggtggagatttatttgattgatgg |
107 |
Q |
| |
|
|||||| |||| ||||| ||||||||||||||||||| ||| ||||||||||||||||| ||||||||||||||||||| |||||||| |||| || |
|
|
| T |
42962909 |
aaatagacacacgtgaattgtgacgtgacaacttgcaatgtgtgtccaccttagacattggtttaacggttttgacggtgggaatttatttagttgacgg |
42963008 |
T |
|
| Q |
108 |
aagatgacttaaagggacca |
127 |
Q |
| |
|
|||||||||| |||| |||| |
|
|
| T |
42963009 |
aagatgacttgaaggcacca |
42963028 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0069 (Bit Score: 67; Significance: 3e-30; HSPs: 1)
Name: scaffold0069
Description:
Target: scaffold0069; HSP #1
Raw Score: 67; E-Value: 3e-30
Query Start/End: Original strand, 8 - 127
Target Start/End: Original strand, 20036 - 20159
Alignment:
| Q |
8 |
aaataggcacatgtgaacggtgacgtgacaacttgcaacatgtatccaccttagacattggattaacggttt----tgacggtggagatttatttgattg |
103 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||| | |||||||||| ||||||||| ||||||||| ||| |
|
|
| T |
20036 |
aaataggcacatgtgaacggtgacgtgacaacttgcaacgtgtatctaccttagacattaggttaacggttttgagtgacggtggggatttatttagttg |
20135 |
T |
|
| Q |
104 |
atggaagatgacttaaagggacca |
127 |
Q |
| |
|
||||||||| |||||||||||| |
|
|
| T |
20136 |
atggaagatagtttaaagggacca |
20159 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0008 (Bit Score: 56; Significance: 1e-23; HSPs: 1)
Name: scaffold0008
Description:
Target: scaffold0008; HSP #1
Raw Score: 56; E-Value: 1e-23
Query Start/End: Original strand, 8 - 127
Target Start/End: Complemental strand, 266815 - 266697
Alignment:
| Q |
8 |
aaataggcacatgtgaacggtgacgtgacaacttgcaacatgtatccaccttagacattggattaacggttttgacggtggagatttatttgattgatgg |
107 |
Q |
| |
|
||||||| ||||||||| ||||||||||||||||| || ||||| ||||||||||||||| |||||||||||||| |||| ||||||||| |||| | |
|
|
| T |
266815 |
aaataggaacatgtgaatggtgacgtgacaacttgtaatgtgtattcaccttagacattgggttaacggttttgac-gtgggaatttatttggttgacgt |
266717 |
T |
|
| Q |
108 |
aagatgacttaaagggacca |
127 |
Q |
| |
|
||||| | |||||||||||| |
|
|
| T |
266716 |
aagataatttaaagggacca |
266697 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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