View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4972_low_1 (Length: 512)
Name: NF4972_low_1
Description: NF4972
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4972_low_1 |
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Alignment Details
Target: chr8 (Bit Score: 170; Significance: 5e-91; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 170; E-Value: 5e-91
Query Start/End: Original strand, 263 - 482
Target Start/End: Complemental strand, 22784311 - 22784080
Alignment:
| Q |
263 |
tgttgagatgctttccttaatttttct-ctctttataaacaaattaaagaattggaagctactcatcaagttagttttgtattttcctctccttattctt |
361 |
Q |
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|||||||||||||| |||||||||| | |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
22784311 |
tgttgagatgcttttcttaattttttttctctttatcaacaaattaaagaattggaagctactcatcaagttagttttgtattttcctctccttattctt |
22784212 |
T |
|
| Q |
362 |
tcaatctttgtgtggaatagattatgaaattca-----------ttgcaggattcaatttcaagaactaaagagtgaagcaaaacaaccattgtaaagaa |
450 |
Q |
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||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
22784211 |
tcaatctttgtgtggaatagattatgaaattcaattacttactcttgcaggattcaattgcaagaactaaagagtgaagcaaaacaaccattgtaaagaa |
22784112 |
T |
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| Q |
451 |
tacttcccatatgccatcaattactaaatgac |
482 |
Q |
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|||||||||||||||||||||||||||||||| |
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| T |
22784111 |
tacttcccatatgccatcaattactaaatgac |
22784080 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 168; E-Value: 8e-90
Query Start/End: Original strand, 264 - 494
Target Start/End: Original strand, 14837429 - 14837670
Alignment:
| Q |
264 |
gttgagatgctttccttaatttttctctctttataaacaaattaaagaattggaagctactcatcaagttagttttgtattttcctctccttattctttc |
363 |
Q |
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||||||||||||| |||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14837429 |
gttgagatgcttttcttaatttttttctctttatcaacaaattaaagaattggaagctactcatcaagttagttttgtattttcctctccttattctttc |
14837528 |
T |
|
| Q |
364 |
aatctttgtgtggaatagattatgaaattca-----------ttgcaggattcaatttcaagaactaaagagtgaagcaaaacaaccattgtaaagaata |
452 |
Q |
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| T |
14837529 |
aatctttgtgtggaatagattatgaaattcaattacttactcttgcaggattcaattgcaagaactacagagtgaagcaaaacggccattgtaaagaata |
14837628 |
T |
|
| Q |
453 |
cttcccatatgccatcaattactaaatgacgctgactataca |
494 |
Q |
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|||||||||||||||||||||||||||||||| | ||||||| |
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| T |
14837629 |
cttcccatatgccatcaattactaaatgacgcggtctataca |
14837670 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 164; Significance: 2e-87; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 164; E-Value: 2e-87
Query Start/End: Original strand, 264 - 494
Target Start/End: Complemental strand, 27964260 - 27964019
Alignment:
| Q |
264 |
gttgagatgctttccttaatttttctctctttataaacaaattaaagaattggaagctactcatcaagttagttttgtattttcctctccttattctttc |
363 |
Q |
| |
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||||||||||||| |||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27964260 |
gttgagatgcttttcttaatttttttctctttatcaacaaattaaagaattggaagctactcatcaagttagttttgtattttcctctccttattctttc |
27964161 |
T |
|
| Q |
364 |
aatctttgtgtggaatagattatgaaattca-----------ttgcaggattcaatttcaagaactaaagagtgaagcaaaacaaccattgtaaagaata |
452 |
Q |
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||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||| ||||||||||| ||| ||||||||||||||| |
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| T |
27964160 |
aatctttgtgtggaatagattatgaaattcaattacttactcttgcaggattcaattgcaagaactacagagtgaagcagaacggccattgtaaagaata |
27964061 |
T |
|
| Q |
453 |
cttcccatatgccatcaattactaaatgacgctgactataca |
494 |
Q |
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|||||||||||||||||||||||||||||||| | ||||||| |
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| T |
27964060 |
cttcccatatgccatcaattactaaatgacgcggtctataca |
27964019 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 148; Significance: 7e-78; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 148; E-Value: 7e-78
Query Start/End: Original strand, 263 - 494
Target Start/End: Complemental strand, 6222522 - 6222282
Alignment:
| Q |
263 |
tgttgagatgctttccttaattttt-ctctctttataaacaaattaaagaattggaagctactcatcaagttagttttgtattttcctctccttattctt |
361 |
Q |
| |
|
|||||||||||||| |||||||||| |||||||||| |||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6222522 |
tgttgagatgcttttcttaattttttctctctttatcaaca---taaagaattcaaagctactcatcaagttagttttgtattttcctctccttattctt |
6222426 |
T |
|
| Q |
362 |
tcaatctttgtgtggaatagattatgaaattca-----------ttgcaggattcaatttcaagaactaaagagtgaagcaaaacaaccattgtaaagaa |
450 |
Q |
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||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||| ||||||||||||| |
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| T |
6222425 |
tcaatctttgtgtggaatagattatgaaattcaattacttactcttgcaggattcaattgcaagaactaaagagtgaagcaaaacagccattgtaaagaa |
6222326 |
T |
|
| Q |
451 |
tacttcccatatgccatcaattactaaatgacgctgactataca |
494 |
Q |
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|||||| ||||||||||||||||||||||||||| | ||||||| |
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| T |
6222325 |
tacttctcatatgccatcaattactaaatgacgcggtctataca |
6222282 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 60; Significance: 2e-25; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 419 - 494
Target Start/End: Complemental strand, 26443445 - 26443370
Alignment:
| Q |
419 |
aaagagtgaagcaaaacaaccattgtaaagaatacttcccatatgccatcaattactaaatgacgctgactataca |
494 |
Q |
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||||||||||||||| || ||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||| |
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| T |
26443445 |
aaagagtgaagcaaatcagccattgtaaagaatacttcccatataccatcaattactaaatgacgcggactataca |
26443370 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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