View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4972_low_2 (Length: 391)
Name: NF4972_low_2
Description: NF4972
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4972_low_2 |
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Alignment Details
Target: chr1 (Bit Score: 307; Significance: 1e-173; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 307; E-Value: 1e-173
Query Start/End: Original strand, 56 - 375
Target Start/End: Complemental strand, 26035601 - 26035280
Alignment:
| Q |
56 |
tacatcaatcatcagggtacttacatcctgaaaagtgtatatgattatcatttcataaacactattgagatatgaaagtacatagtgaaaaatgtatatg |
155 |
Q |
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| T |
26035601 |
tacatcaatcatcagggtacttacatcctgaaaagtgtatatgattatcatttcataaacactattgagatatgaaagtacatagtgaaaaatgtatatg |
26035502 |
T |
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| Q |
156 |
attatcatcccata--tattaaatagtttgtggtgctggggacttatttgagaacccaaaaattccagaaaggatgggcaccactaattcatacaaaaag |
253 |
Q |
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| T |
26035501 |
attatcatcccataaatattaaatagtttgtggtgctggggacttatttgagaacccaaaaattccagaaaggatgggcaccactaattcatacaaaaag |
26035402 |
T |
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| Q |
254 |
aaagagaacttgtattaaaaagaaataaagaagataatatctatgaatcttctaatactctcgagcactgagcaatgtgggatcatttctctttcaattt |
353 |
Q |
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| T |
26035401 |
aaagaaaacttgtattaaaaagaaataaagaagataatatctatgaatcttctaatactctcgagcactgagcaatgtgggatcatttctctttcaattt |
26035302 |
T |
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| Q |
354 |
cttggttatggcaaatgctgct |
375 |
Q |
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| T |
26035301 |
cttggttatggcaaatgctgct |
26035280 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 14 - 46
Target Start/End: Complemental strand, 26035682 - 26035650
Alignment:
| Q |
14 |
atatagttataaataaaagtaccctcatacaca |
46 |
Q |
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| T |
26035682 |
atatagttataaataaatgtaccctcatacaca |
26035650 |
T |
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