View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4972_low_4 (Length: 261)

Name: NF4972_low_4
Description: NF4972
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4972_low_4
NF4972_low_4
[»] scaffold0091 (3 HSPs)
scaffold0091 (138-250)||(29057-29169)
scaffold0091 (8-44)||(24720-24756)
scaffold0091 (8-44)||(28917-28953)
[»] scaffold0218 (1 HSPs)
scaffold0218 (139-250)||(14378-14489)
[»] chr3 (9 HSPs)
chr3 (141-250)||(16642300-16642409)
chr3 (140-250)||(4712803-4712913)
chr3 (138-250)||(14062781-14062893)
chr3 (138-250)||(14055040-14055152)
chr3 (142-243)||(13926858-13926960)
chr3 (8-44)||(14055248-14055284)
chr3 (8-44)||(4713023-4713059)
chr3 (8-44)||(14063009-14063045)
chr3 (8-44)||(16642133-16642169)
[»] chr6 (4 HSPs)
chr6 (138-250)||(14989378-14989490)
chr6 (140-250)||(14980266-14980376)
chr6 (138-175)||(10906902-10906939)
chr6 (8-44)||(14980486-14980522)
[»] chr1 (4 HSPs)
chr1 (138-250)||(51658665-51658777)
chr1 (138-246)||(13882243-13882351)
chr1 (153-247)||(1567069-1567166)
chr1 (8-44)||(13882490-13882526)
[»] chr7 (7 HSPs)
chr7 (138-250)||(48376787-48376899)
chr7 (138-250)||(16060512-16060624)
chr7 (138-243)||(4531759-4531865)
chr7 (138-175)||(9080338-9080375)
chr7 (8-44)||(9080206-9080242)
chr7 (8-44)||(16060374-16060410)
chr7 (8-44)||(16069031-16069067)
[»] chr8 (4 HSPs)
chr8 (138-250)||(23658526-23658646)
chr8 (138-250)||(23657751-23657881)
chr8 (208-243)||(29293929-29293964)
chr8 (8-44)||(23657648-23657684)
[»] scaffold1269 (1 HSPs)
scaffold1269 (161-250)||(1-90)
[»] scaffold0003 (2 HSPs)
scaffold0003 (138-213)||(130795-130870)
scaffold0003 (8-44)||(130633-130669)
[»] chr2 (1 HSPs)
chr2 (138-243)||(23656470-23656576)
[»] scaffold0319 (1 HSPs)
scaffold0319 (184-250)||(13573-13639)
[»] chr4 (1 HSPs)
chr4 (159-229)||(3576240-3576311)
[»] scaffold0063 (1 HSPs)
scaffold0063 (138-176)||(28342-28380)


Alignment Details
Target: scaffold0091 (Bit Score: 101; Significance: 4e-50; HSPs: 3)
Name: scaffold0091
Description:

Target: scaffold0091; HSP #1
Raw Score: 101; E-Value: 4e-50
Query Start/End: Original strand, 138 - 250
Target Start/End: Original strand, 29057 - 29169
Alignment:
Q  138 ctcatcatcactaacatataaacattatcatctctcatcgtatttatttaattacatgtatataatatcttcgtcatcactcttcgtcacattatgtatt 237  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||    
T  29057 ctcatcatcactaacatataaacattatcatttctcatcgtatttatttaattacatatatataatatcttcgtcatcactcttcgtcacattatggatt 29156  T
Q  238 cctcattattcat 250  Q
    |||||||||||||    
T  29157 cctcattattcat 29169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0091; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 8 - 44
Target Start/End: Original strand, 24720 - 24756
Alignment:
Q  8 gacatcatcattcaagtgatcatcataattatacgtc 44  Q
    |||| |||||||||||| |||||||||||||||||||    
T  24720 gacaccatcattcaagtcatcatcataattatacgtc 24756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0091; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 8 - 44
Target Start/End: Original strand, 28917 - 28953
Alignment:
Q  8 gacatcatcattcaagtgatcatcataattatacgtc 44  Q
    |||| |||||||||||| |||||||||||||||||||    
T  28917 gacaccatcattcaagtcatcatcataattatacgtc 28953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0218 (Bit Score: 100; Significance: 1e-49; HSPs: 1)
Name: scaffold0218
Description:

Target: scaffold0218; HSP #1
Raw Score: 100; E-Value: 1e-49
Query Start/End: Original strand, 139 - 250
Target Start/End: Original strand, 14378 - 14489
Alignment:
Q  139 tcatcatcactaacatataaacattatcatctctcatcgtatttatttaattacatgtatataatatcttcgtcatcactcttcgtcacattatgtattc 238  Q
    |||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||    
T  14378 tcatcatcactaacatataaacattatcatttctcatcgtatttatttaattacatatatataatatcttcgtcatcactcttcgtcacattatggattc 14477  T
Q  239 ctcattattcat 250  Q
    ||||||||||||    
T  14478 ctcattattcat 14489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 98; Significance: 2e-48; HSPs: 9)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 141 - 250
Target Start/End: Original strand, 16642300 - 16642409
Alignment:
Q  141 atcatcactaacatataaacattatcatctctcatcgtatttatttaattacatgtatataatatcttcgtcatcactcttcgtcacattatgtattcct 240  Q
    |||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||    
T  16642300 atcatcactaacatataaacattatcatttctcatcgtatttatttaattacatatatataatatcttcgtcatcactcttcgtcacattatggattcct 16642399  T
Q  241 cattattcat 250  Q
    ||||||||||    
T  16642400 cattattcat 16642409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 140 - 250
Target Start/End: Complemental strand, 4712913 - 4712803
Alignment:
Q  140 catcatcactaacatataaacattatcatctctcatcgtatttatttaattacatgtatataatatcttcgtcatcactcttcgtcacattatgtattcc 239  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||| |||||    
T  4712913 catcatcactaacatataaacattatcatttctcatcgtatttatttaattacatatatatattatcttcgtcatcactcttcgtcacattatggattcc 4712814  T
Q  240 tcattattcat 250  Q
    |||||||||||    
T  4712813 tcattattcat 4712803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 138 - 250
Target Start/End: Complemental strand, 14062893 - 14062781
Alignment:
Q  138 ctcatcatcactaacatataaacattatcatctctcatcgtatttatttaattacatgtatataatatcttcgtcatcactcttcgtcacattatgtatt 237  Q
    |||||||| |||||||||||||||||||||| ||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||| | |    
T  14062893 ctcatcataactaacatataaacattatcatttctcatcgtatttatttaattacatatgtataatatcttcgtcatcactcttcgtcacattatggaat 14062794  T
Q  238 cctcattattcat 250  Q
    |||||||||||||    
T  14062793 cctcattattcat 14062781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 138 - 250
Target Start/End: Complemental strand, 14055152 - 14055040
Alignment:
Q  138 ctcatcatcactaacatataaacattatcatctctcatcgtatttatttaattacatgtatataatatcttcgtcatcactcttcgtcacattatgtatt 237  Q
    ||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||| | |||||||||||||||||||||||||||| ||||||  | |    
T  14055152 ctcattatcactaacatataaacattatcatttctcatcgtatttatttaattacatatgtataatatcttcgtcatcactcttcgtcgcattatagaat 14055053  T
Q  238 cctcattattcat 250  Q
    |||||||||||||    
T  14055052 cctcattattcat 14055040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 142 - 243
Target Start/End: Complemental strand, 13926960 - 13926858
Alignment:
Q  142 tcatcactaacatataaacattatcatctctcatcgtatttatttaattacatgtatataatatc-ttcgtcatcactcttcgtcacattatgtattcct 240  Q
    |||||||||| |||||||||||||||| |||||||||||||||||| ||| || |||||||||||  | ||||||||||||| |||||||||| ||||||    
T  13926960 tcatcactaaaatataaacattatcatttctcatcgtatttatttatttaaatatatataatatcaattgtcatcactcttcatcacattatggattcct 13926861  T
Q  241 cat 243  Q
    |||    
T  13926860 cat 13926858  T

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Target: chr3; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 8 - 44
Target Start/End: Complemental strand, 14055284 - 14055248
Alignment:
Q  8 gacatcatcattcaagtgatcatcataattatacgtc 44  Q
    ||||||||||||||||| |||||||||||||||||||    
T  14055284 gacatcatcattcaagtcatcatcataattatacgtc 14055248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 8 - 44
Target Start/End: Complemental strand, 4713059 - 4713023
Alignment:
Q  8 gacatcatcattcaagtgatcatcataattatacgtc 44  Q
    |||| |||||||||||| |||||||||||||||||||    
T  4713059 gacaccatcattcaagttatcatcataattatacgtc 4713023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 8 - 44
Target Start/End: Complemental strand, 14063045 - 14063009
Alignment:
Q  8 gacatcatcattcaagtgatcatcataattatacgtc 44  Q
    |||| |||||||||||| |||||||||||||||||||    
T  14063045 gacaccatcattcaagtcatcatcataattatacgtc 14063009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 8 - 44
Target Start/End: Original strand, 16642133 - 16642169
Alignment:
Q  8 gacatcatcattcaagtgatcatcataattatacgtc 44  Q
    |||| |||||||||||| |||||||||||||||||||    
T  16642133 gacaccatcattcaagtcatcatcataattatacgtc 16642169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 97; Significance: 9e-48; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 97; E-Value: 9e-48
Query Start/End: Original strand, 138 - 250
Target Start/End: Complemental strand, 14989490 - 14989378
Alignment:
Q  138 ctcatcatcactaacatataaacattatcatctctcatcgtatttatttaattacatgtatataatatcttcgtcatcactcttcgtcacattatgtatt 237  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||    
T  14989490 ctcatcatcactaacatataaacattatcatttctcatcgtatttatttaattacatatatataatatcttcgtcatcactcttcgtcacattatggatt 14989391  T
Q  238 cctcattattcat 250  Q
    | |||||||||||    
T  14989390 cgtcattattcat 14989378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 140 - 250
Target Start/End: Complemental strand, 14980376 - 14980266
Alignment:
Q  140 catcatcactaacatataaacattatcatctctcatcgtatttatttaattacatgtatataatatcttcgtcatcactcttcgtcacattatgtattcc 239  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||| |||||    
T  14980376 catcatcactaacatataaacattatcatttctcatcgtatttatttaattacatatatatattatcttcgtcatcactcttcgtcacattatggattcc 14980277  T
Q  240 tcattattcat 250  Q
    |||||||||||    
T  14980276 tcattattcat 14980266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 138 - 175
Target Start/End: Complemental strand, 10906939 - 10906902
Alignment:
Q  138 ctcatcatcactaacatataaacattatcatctctcat 175  Q
    |||||||||||||| |||||||||||||||| ||||||    
T  10906939 ctcatcatcactaaaatataaacattatcatttctcat 10906902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 8 - 44
Target Start/End: Complemental strand, 14980522 - 14980486
Alignment:
Q  8 gacatcatcattcaagtgatcatcataattatacgtc 44  Q
    |||| |||||||||||| |||||||||||||||||||    
T  14980522 gacaccatcattcaagtcatcatcataattatacgtc 14980486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 97; Significance: 9e-48; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 97; E-Value: 9e-48
Query Start/End: Original strand, 138 - 250
Target Start/End: Complemental strand, 51658777 - 51658665
Alignment:
Q  138 ctcatcatcactaacatataaacattatcatctctcatcgtatttatttaattacatgtatataatatcttcgtcatcactcttcgtcacattatgtatt 237  Q
    |||||||||||||||||||||| |||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||    
T  51658777 ctcatcatcactaacatataaatattatcatttctcatcgtatttatttaattacatatatataatatcttcgtcatcactcttcgtcacattatggatt 51658678  T
Q  238 cctcattattcat 250  Q
    |||||||||||||    
T  51658677 cctcattattcat 51658665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 138 - 246
Target Start/End: Complemental strand, 13882351 - 13882243
Alignment:
Q  138 ctcatcatcactaacatataaacattatcatctctcatcgtatttatttaattacatgtatataatatcttcgtcatcactcttcgtcacattatgtatt 237  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||| |||    
T  13882351 ctcatcatcactaacatataaacattatcatttctcatcgtatttatttaattacatatatataatatcttcgtcatcactcttcgtcacaatatggatt 13882252  T
Q  238 cctcattat 246  Q
    |||||||||    
T  13882251 cctcattat 13882243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 153 - 247
Target Start/End: Complemental strand, 1567166 - 1567069
Alignment:
Q  153 atataaacattatcatctctcatcgtatttatttaattacatgtatataatatc-ttcgtcatcactcttcgtcac-attatgt-attcctcattatt 247  Q
    ||||||| ||| |||| |||||||||||||||||  |||||| |||||||||||  |||||||||||||| ||||| ||||| | |||||||||||||    
T  1567166 atataaatattgtcatttctcatcgtatttatttgtttacatatatataatatcaatcgtcatcactctttgtcacaattatatgattcctcattatt 1567069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 8 - 44
Target Start/End: Complemental strand, 13882526 - 13882490
Alignment:
Q  8 gacatcatcattcaagtgatcatcataattatacgtc 44  Q
    |||| |||||||||||| |||||||||||||||||||    
T  13882526 gacaccatcattcaagtcatcatcataattatacgtc 13882490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 93; Significance: 2e-45; HSPs: 7)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 138 - 250
Target Start/End: Original strand, 48376787 - 48376899
Alignment:
Q  138 ctcatcatcactaacatataaacattatcatctctcatcgtatttatttaattacatgtatataatatcttcgtcatcactcttcgtcacattatgtatt 237  Q
    |||||||||| |||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||  |||    
T  48376787 ctcatcatcaataacatataaacattatcatttctcatcgtatttatttaattacatatatataatatcttcgtcatcactcttcgtcacattatagatt 48376886  T
Q  238 cctcattattcat 250  Q
    |||||||||||||    
T  48376887 cctcattattcat 48376899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 138 - 250
Target Start/End: Original strand, 16060512 - 16060624
Alignment:
Q  138 ctcatcatcactaacatataaacattatcatctctcatcgtatttatttaattacatgtatataatatcttcgtcatcactcttcgtcacattatgtatt 237  Q
    ||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||| |||||||||||||||||||||||| || |||||||||  |||    
T  16060512 ctcatcatcactaacatataaacattatcatttctcatcatatttatttaattacatatatataatatcttcgtcatcactcctcatcacattatagatt 16060611  T
Q  238 cctcattattcat 250  Q
    |||||||||||||    
T  16060612 cctcattattcat 16060624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 138 - 243
Target Start/End: Complemental strand, 4531865 - 4531759
Alignment:
Q  138 ctcatcatcactaacatataaacattatcatctctcatcgtatttatttaattacatgtatataatatc-ttcgtcatcactcttcgtcacattatgtat 236  Q
    |||||||||| ||| |||||| |||||| || |||||| ||||||||||| |||||| |||||||||||  | |||||||||||||||||||||||| ||    
T  4531865 ctcatcatcaataaaatataagcattattatttctcattgtatttatttatttacatatatataatatcaattgtcatcactcttcgtcacattatggat 4531766  T
Q  237 tcctcat 243  Q
    |||||||    
T  4531765 tcctcat 4531759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 138 - 175
Target Start/End: Original strand, 9080338 - 9080375
Alignment:
Q  138 ctcatcatcactaacatataaacattatcatctctcat 175  Q
    ||||||||||||||||||||||||||||||| ||||||    
T  9080338 ctcatcatcactaacatataaacattatcatttctcat 9080375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 8 - 44
Target Start/End: Original strand, 9080206 - 9080242
Alignment:
Q  8 gacatcatcattcaagtgatcatcataattatacgtc 44  Q
    |||| |||||||||||| |||||||||||||||||||    
T  9080206 gacaccatcattcaagtcatcatcataattatacgtc 9080242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 8 - 44
Target Start/End: Original strand, 16060374 - 16060410
Alignment:
Q  8 gacatcatcattcaagtgatcatcataattatacgtc 44  Q
    |||| |||||||||||| |||||||||||||||||||    
T  16060374 gacaccatcattcaagtcatcatcataattatacgtc 16060410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 8 - 44
Target Start/End: Complemental strand, 16069067 - 16069031
Alignment:
Q  8 gacatcatcattcaagtgatcatcataattatacgtc 44  Q
    ||||||||||||||| | |||||||||||||||||||    
T  16069067 gacatcatcattcaaatcatcatcataattatacgtc 16069031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 76; Significance: 3e-35; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 138 - 250
Target Start/End: Original strand, 23658526 - 23658646
Alignment:
Q  138 ctcatcatcactaacatataaacattatcatctctcatcgtatttatttaattaca--------tgtatataatatcttcgtcatcactcttcgtcacat 229  Q
    |||||||||||||||||||||||||||| || ||||||||||||||||||||||||        | ||||||||||||||||||||||||||||||||||    
T  23658526 ctcatcatcactaacatataaacattataatttctcatcgtatttatttaattacacacacatatatatataatatcttcgtcatcactcttcgtcacat 23658625  T
Q  230 tatgtattcctcattattcat 250  Q
    |||| ||||||||||||||||    
T  23658626 tatggattcctcattattcat 23658646  T

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Target: chr8; HSP #2
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 138 - 250
Target Start/End: Original strand, 23657751 - 23657881
Alignment:
Q  138 ctcatcatcactaacatataaacattatcatctctcatcgtatttatttaattac------------------atgtatataatatcttcgtcatcactc 219  Q
    |||||||||||||||||||||||||||| || |||||||||||||||||||||||                  || ||||||||||||||||||||||||    
T  23657751 ctcatcatcactaacatataaacattataatttctcatcgtatttatttaattacatatatatatatatatatatatatataatatcttcgtcatcactc 23657850  T
Q  220 ttcgtcacattatgtattcctcattattcat 250  Q
    |||||||||||||| ||||||||||||||||    
T  23657851 ttcgtcacattatggattcctcattattcat 23657881  T

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Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 208 - 243
Target Start/End: Original strand, 29293929 - 29293964
Alignment:
Q  208 tcgtcatcactcttcgtcacattatgtattcctcat 243  Q
    |||||||||||||||||||||||||| |||||||||    
T  29293929 tcgtcatcactcttcgtcacattatggattcctcat 29293964  T

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Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 8 - 44
Target Start/End: Original strand, 23657648 - 23657684
Alignment:
Q  8 gacatcatcattcaagtgatcatcataattatacgtc 44  Q
    |||| |||||||||||| |||||||||||||||||||    
T  23657648 gacaccatcattcaagtcatcatcataattatacgtc 23657684  T

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Target: scaffold1269 (Bit Score: 70; Significance: 1e-31; HSPs: 1)
Name: scaffold1269
Description:

Target: scaffold1269; HSP #1
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 161 - 250
Target Start/End: Original strand, 1 - 90
Alignment:
Q  161 attatcatctctcatcgtatttatttaattacatgtatataatatcttcgtcatcactcttcgtcacattatgtattcctcattattcat 250  Q
    |||||||| ||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||| | ||||||||||||||    
T  1 attatcatttctcatcgtatttatttaattacatatgtataatatcttcgtcatcactcttcgtcacattatggaatcctcattattcat 90  T

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Target: scaffold0003 (Bit Score: 68; Significance: 2e-30; HSPs: 2)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 138 - 213
Target Start/End: Original strand, 130795 - 130870
Alignment:
Q  138 ctcatcatcactaacatataaacattatcatctctcatcgtatttatttaattacatgtatataatatcttcgtca 213  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||    
T  130795 ctcatcatcactaacatataaacattatcatttctcatcgtatttatttaattacatatatataatatcttcgtca 130870  T

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Target: scaffold0003; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 8 - 44
Target Start/End: Original strand, 130633 - 130669
Alignment:
Q  8 gacatcatcattcaagtgatcatcataattatacgtc 44  Q
    |||| |||||||||||| |||||||||||||||||||    
T  130633 gacaccatcattcaagtcatcatcataattatacgtc 130669  T

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Target: chr2 (Bit Score: 55; Significance: 1e-22; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 138 - 243
Target Start/End: Complemental strand, 23656576 - 23656470
Alignment:
Q  138 ctcatcatcactaacatataaacattatcatctctcatcgtatttatttaattacatgtatataatatc-ttcgtcatcactcttcgtcacattatgtat 236  Q
    ||||| |||| ||| ||||||| |||||||| |||||| ||||||||||| || ||| |||||||||||  |||||||||||||||||||||||||| ||    
T  23656576 ctcattatcattaaaatataaatattatcatttctcattgtatttatttactttcatatatataatatcaatcgtcatcactcttcgtcacattatggat 23656477  T
Q  237 tcctcat 243  Q
    |||||||    
T  23656476 tcctcat 23656470  T

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Target: scaffold0319 (Bit Score: 51; Significance: 3e-20; HSPs: 1)
Name: scaffold0319
Description:

Target: scaffold0319; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 184 - 250
Target Start/End: Complemental strand, 13639 - 13573
Alignment:
Q  184 tttaattacatgtatataatatcttcgtcatcactcttcgtcacattatgtattcctcattattcat 250  Q
    ||||||||||| |||||||||||||||||||||||||| ||||||| ||| ||||||||||||||||    
T  13639 tttaattacatatatataatatcttcgtcatcactctttgtcacatcatggattcctcattattcat 13573  T

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Target: chr4 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 159 - 229
Target Start/End: Complemental strand, 3576311 - 3576240
Alignment:
Q  159 acattatcatctctcatcgtatttatttaattacatgtatataatatc-ttcgtcatcactcttcgtcacat 229  Q
    |||| ||||||||||||||||||||||||  ||||| ||||||| |||  ||||||||||||||||||||||    
T  3576311 acatcatcatctctcatcgtatttatttatatacatttatataaaatcaatcgtcatcactcttcgtcacat 3576240  T

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Target: scaffold0063 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0063
Description:

Target: scaffold0063; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 138 - 176
Target Start/End: Complemental strand, 28380 - 28342
Alignment:
Q  138 ctcatcatcactaacatataaacattatcatctctcatc 176  Q
    ||||||||||||||||||||||||| ||||| |||||||    
T  28380 ctcatcatcactaacatataaacatcatcatttctcatc 28342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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