View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4972_low_5 (Length: 231)

Name: NF4972_low_5
Description: NF4972
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4972_low_5
NF4972_low_5
[»] chr4 (4 HSPs)
chr4 (7-231)||(15025994-15026224)
chr4 (191-229)||(31049885-31049923)
chr4 (191-231)||(47472396-47472436)
chr4 (189-221)||(51459066-51459098)
[»] chr3 (6 HSPs)
chr3 (189-229)||(20315106-20315146)
chr3 (189-231)||(20336995-20337037)
chr3 (190-231)||(54783281-54783322)
chr3 (187-231)||(9766113-9766157)
chr3 (189-229)||(44648259-44648299)
chr3 (189-221)||(52423223-52423255)
[»] chr8 (5 HSPs)
chr8 (189-231)||(26938536-26938578)
chr8 (189-231)||(26938774-26938816)
chr8 (191-229)||(42023896-42023934)
chr8 (190-231)||(2415082-2415123)
chr8 (191-231)||(39344801-39344841)
[»] chr6 (1 HSPs)
chr6 (191-231)||(34187681-34187721)
[»] chr1 (3 HSPs)
chr1 (189-225)||(23230791-23230827)
chr1 (189-221)||(37470800-37470832)
chr1 (189-229)||(33752868-33752908)
[»] chr5 (6 HSPs)
chr5 (192-231)||(1298912-1298951)
chr5 (190-231)||(2298901-2298942)
chr5 (190-231)||(39057091-39057132)
chr5 (183-215)||(3191791-3191823)
chr5 (189-229)||(22860872-22860912)
chr5 (184-224)||(38948747-38948787)
[»] chr2 (2 HSPs)
chr2 (189-224)||(35954442-35954477)
chr2 (189-221)||(24490693-24490725)
[»] scaffold0020 (1 HSPs)
scaffold0020 (187-221)||(152076-152110)
[»] scaffold0233 (1 HSPs)
scaffold0233 (189-229)||(16832-16872)


Alignment Details
Target: chr4 (Bit Score: 148; Significance: 3e-78; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 148; E-Value: 3e-78
Query Start/End: Original strand, 7 - 231
Target Start/End: Complemental strand, 15026224 - 15025994
Alignment:
Q  7 gtcaccacattagcacatactattgaagtttgaaggatttgaggaatcataaggaattattctgataaaagnnnnnnnntatatattaaagaatgcaatt 106  Q
    ||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||         | | |||| |||||||||||    
T  15026224 gtcaccacattagcacatactattgaagtttgaaggatttctggaatcataaggaattattctgataaaagaaaaaaa--aaaaattatagaatgcaatt 15026127  T
Q  107 gctctatttatagggcatatttagaacttaaccaattatcaaaccgactagccaagtaattaatctcctagaccac--------ttttatgggttaaata 198  Q
    ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||        ||||||||||||||||    
T  15026126 gctgtatttatagggcatatttagaacttaaccaattatcaaaccgactagccaagtaattaatctcctagaccactaatatagttttatgggttaaata 15026027  T
Q  199 tgtttttagtcactacaaaattacaaactttta 231  Q
    |||||||||||||||||||||||||||||||||    
T  15026026 tgtttttagtcactacaaaattacaaactttta 15025994  T

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Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 191 - 229
Target Start/End: Original strand, 31049885 - 31049923
Alignment:
Q  191 gttaaatatgtttttagtcactacaaaattacaaacttt 229  Q
    |||||||||||||||||||  ||||||||||||||||||    
T  31049885 gttaaatatgtttttagtccttacaaaattacaaacttt 31049923  T

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Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 191 - 231
Target Start/End: Complemental strand, 47472436 - 47472396
Alignment:
Q  191 gttaaatatgtttttagtcactacaaaattacaaactttta 231  Q
    |||||||||||||| |||| |||||||||||||| ||||||    
T  47472436 gttaaatatgttttaagtccctacaaaattacaagctttta 47472396  T

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Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 189 - 221
Target Start/End: Complemental strand, 51459098 - 51459066
Alignment:
Q  189 gggttaaatatgtttttagtcactacaaaatta 221  Q
    ||||||||||||||||||||||||| |||||||    
T  51459098 gggttaaatatgtttttagtcactataaaatta 51459066  T

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Target: chr3 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 189 - 229
Target Start/End: Complemental strand, 20315146 - 20315106
Alignment:
Q  189 gggttaaatatgtttttagtcactacaaaattacaaacttt 229  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  20315146 gggttaaatatgtttttagtcactacaaaattacaaacttt 20315106  T

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Target: chr3; HSP #2
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 189 - 231
Target Start/End: Complemental strand, 20337037 - 20336995
Alignment:
Q  189 gggttaaatatgtttttagtcactacaaaattacaaactttta 231  Q
    ||||||||||||||||||||| |||||||||||||||||||||    
T  20337037 gggttaaatatgtttttagtccctacaaaattacaaactttta 20336995  T

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Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 190 - 231
Target Start/End: Complemental strand, 54783322 - 54783281
Alignment:
Q  190 ggttaaatatgtttttagtcactacaaaattacaaactttta 231  Q
    ||||||||||||||||||||  ||||||||||||| ||||||    
T  54783322 ggttaaatatgtttttagtccttacaaaattacaagctttta 54783281  T

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Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 187 - 231
Target Start/End: Complemental strand, 9766157 - 9766113
Alignment:
Q  187 atgggttaaatatgtttttagtcactacaaaattacaaactttta 231  Q
    ||||||||||||||||||||||  ||| ||||||| |||||||||    
T  9766157 atgggttaaatatgtttttagtatctataaaattagaaactttta 9766113  T

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Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 189 - 229
Target Start/End: Complemental strand, 44648299 - 44648259
Alignment:
Q  189 gggttaaatatgtttttagtcactacaaaattacaaacttt 229  Q
    ||||||||||| ||||||||| ||| |||||||||||||||    
T  44648299 gggttaaatatttttttagtccctataaaattacaaacttt 44648259  T

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Target: chr3; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 189 - 221
Target Start/End: Complemental strand, 52423255 - 52423223
Alignment:
Q  189 gggttaaatatgtttttagtcactacaaaatta 221  Q
    ||||||||||||||||||||| |||||||||||    
T  52423255 gggttaaatatgtttttagtccctacaaaatta 52423223  T

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Target: chr8 (Bit Score: 35; Significance: 0.00000000008; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 189 - 231
Target Start/End: Original strand, 26938536 - 26938578
Alignment:
Q  189 gggttaaatatgtttttagtcactacaaaattacaaactttta 231  Q
    ||||||||||||||||||||| |||||||||||||| ||||||    
T  26938536 gggttaaatatgtttttagtccctacaaaattacaagctttta 26938578  T

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Target: chr8; HSP #2
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 189 - 231
Target Start/End: Original strand, 26938774 - 26938816
Alignment:
Q  189 gggttaaatatgtttttagtcactacaaaattacaaactttta 231  Q
    ||||||||||||||||||||| |||||||||||||| ||||||    
T  26938774 gggttaaatatgtttttagtccctacaaaattacaagctttta 26938816  T

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Target: chr8; HSP #3
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 191 - 229
Target Start/End: Original strand, 42023896 - 42023934
Alignment:
Q  191 gttaaatatgtttttagtcactacaaaattacaaacttt 229  Q
    ||||||||||||||||||| |||||||||||||||||||    
T  42023896 gttaaatatgtttttagtccctacaaaattacaaacttt 42023934  T

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Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 190 - 231
Target Start/End: Complemental strand, 2415123 - 2415082
Alignment:
Q  190 ggttaaatatgtttttagtcactacaaaattacaaactttta 231  Q
    |||||||||||||||||||| ||||||||||| || ||||||    
T  2415123 ggttaaatatgtttttagtccctacaaaattataagctttta 2415082  T

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Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 191 - 231
Target Start/End: Complemental strand, 39344841 - 39344801
Alignment:
Q  191 gttaaatatgtttttagtcactacaaaattacaaactttta 231  Q
    ||||||||||||||||||| || ||||||||||| ||||||    
T  39344841 gttaaatatgtttttagtccctgcaaaattacaagctttta 39344801  T

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Target: chr6 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 191 - 231
Target Start/End: Complemental strand, 34187721 - 34187681
Alignment:
Q  191 gttaaatatgtttttagtcactacaaaattacaaactttta 231  Q
    ||||||||||||||||||| ||||||||||||||| |||||    
T  34187721 gttaaatatgtttttagtccctacaaaattacaaattttta 34187681  T

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Target: chr1 (Bit Score: 33; Significance: 0.000000001; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 189 - 225
Target Start/End: Original strand, 23230791 - 23230827
Alignment:
Q  189 gggttaaatatgtttttagtcactacaaaattacaaa 225  Q
    ||||||||||||||||||||| |||||||||||||||    
T  23230791 gggttaaatatgtttttagtctctacaaaattacaaa 23230827  T

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Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 189 - 221
Target Start/End: Original strand, 37470800 - 37470832
Alignment:
Q  189 gggttaaatatgtttttagtcactacaaaatta 221  Q
    |||||||||||||||||||||||||||||||||    
T  37470800 gggttaaatatgtttttagtcactacaaaatta 37470832  T

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Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 189 - 229
Target Start/End: Original strand, 33752868 - 33752908
Alignment:
Q  189 gggttaaatatgtttttagtcactacaaaattacaaacttt 229  Q
    ||||||||||||||||||||| ||| |||||||||| ||||    
T  33752868 gggttaaatatgtttttagtccctataaaattacaagcttt 33752908  T

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Target: chr5 (Bit Score: 32; Significance: 0.000000005; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 192 - 231
Target Start/End: Complemental strand, 1298951 - 1298912
Alignment:
Q  192 ttaaatatgtttttagtcactacaaaattacaaactttta 231  Q
    |||||||||||||||||| |||||||||||||| ||||||    
T  1298951 ttaaatatgtttttagtccctacaaaattacaagctttta 1298912  T

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Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 190 - 231
Target Start/End: Original strand, 2298901 - 2298942
Alignment:
Q  190 ggttaaatatgtttttagtcactacaaaattacaaactttta 231  Q
    |||||||||||||| ||||| |||||||||||||| ||||||    
T  2298901 ggttaaatatgtttatagtccctacaaaattacaagctttta 2298942  T

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Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 190 - 231
Target Start/End: Original strand, 39057091 - 39057132
Alignment:
Q  190 ggttaaatatgtttttagtcactacaaaattacaaactttta 231  Q
    |||||||||| ||||||||| ||||||||||||||| |||||    
T  39057091 ggttaaatatatttttagtctctacaaaattacaaattttta 39057132  T

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Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 183 - 215
Target Start/End: Original strand, 3191791 - 3191823
Alignment:
Q  183 ttttatgggttaaatatgtttttagtcactaca 215  Q
    ||||||||||||||||||||||||||| |||||    
T  3191791 ttttatgggttaaatatgtttttagtccctaca 3191823  T

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Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 189 - 229
Target Start/End: Original strand, 22860872 - 22860912
Alignment:
Q  189 gggttaaatatgtttttagtcactacaaaattacaaacttt 229  Q
    ||||||||| ||||||||||| |||||||||||||| ||||    
T  22860872 gggttaaatgtgtttttagtccctacaaaattacaagcttt 22860912  T

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Target: chr5; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 184 - 224
Target Start/End: Complemental strand, 38948787 - 38948747
Alignment:
Q  184 tttatgggttaaatatgtttttagtcactacaaaattacaa 224  Q
    |||| ||||||||||||||||||||  ||||||||||||||    
T  38948787 tttaagggttaaatatgtttttagtttctacaaaattacaa 38948747  T

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Target: chr2 (Bit Score: 32; Significance: 0.000000005; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 189 - 224
Target Start/End: Complemental strand, 35954477 - 35954442
Alignment:
Q  189 gggttaaatatgtttttagtcactacaaaattacaa 224  Q
    ||||||||||||||||||||| ||||||||||||||    
T  35954477 gggttaaatatgtttttagtccctacaaaattacaa 35954442  T

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Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 189 - 221
Target Start/End: Complemental strand, 24490725 - 24490693
Alignment:
Q  189 gggttaaatatgtttttagtcactacaaaatta 221  Q
    ||||||||||||||||||||| |||||||||||    
T  24490725 gggttaaatatgtttttagtccctacaaaatta 24490693  T

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Target: scaffold0020 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0020
Description:

Target: scaffold0020; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 187 - 221
Target Start/End: Original strand, 152076 - 152110
Alignment:
Q  187 atgggttaaatatgtttttagtcactacaaaatta 221  Q
    ||||||||||||||||||||||| |||||||||||    
T  152076 atgggttaaatatgtttttagtccctacaaaatta 152110  T

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Target: scaffold0233 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0233
Description:

Target: scaffold0233; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 189 - 229
Target Start/End: Original strand, 16832 - 16872
Alignment:
Q  189 gggttaaatatgtttttagtcactacaaaattacaaacttt 229  Q
    ||||||||||||||||||||| ||| |||||||| ||||||    
T  16832 gggttaaatatgtttttagtccctataaaattaccaacttt 16872  T

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