View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4973-Insertion-1 (Length: 981)
Name: NF4973-Insertion-1
Description: NF4973
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4973-Insertion-1 |
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| [»] chr3 (2 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 646; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 646; E-Value: 0
Query Start/End: Original strand, 243 - 981
Target Start/End: Original strand, 55458185 - 55458915
Alignment:
| Q |
243 |
cagatatcaaaggcccatttcttcaagatttcctttatttgtatcacaggtatttattatgtgtacacttctaggtgtgcagttcttaggaatttatggt |
342 |
Q |
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| T |
55458185 |
cagatatcaaaggcccatttcttcaagatttcctttatttgtatcacaggtatttattatgtgtacacttctaggtgtgcagttcttaggaatttatggt |
55458284 |
T |
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| Q |
343 |
ctctcattcaaatgttttacaactacatatgcatatgcaaatacaacaaacagctgattgtaatctcttttattatacaggatggatcaaattcagacgt |
442 |
Q |
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| T |
55458285 |
ctctcattcaaatgttttacaaatacatatgcatatgcaaatacaacaaacagctgattgtaatctcttttattatacaggatggatcaaattcagacgt |
55458384 |
T |
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| Q |
443 |
caaaagaaaggctttgagctacgatgagttatctcatatgcaggtatatacattcacatgcatgtgctgcacttagattatttgtattcaccttactttc |
542 |
Q |
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| T |
55458385 |
caaaagaaaggctctgagctacgatgagctatctcatatgcaggtatatacattcacatgcatgtgctgtacttagattatttgtattcaccttactttc |
55458484 |
T |
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| Q |
543 |
aaaggctattacttgtcttcttatggtgcttactttagatgtcatccttactccacaagcctcggccacctttaccagcgcaaaacttttgttgaaagtt |
642 |
Q |
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| T |
55458485 |
aaaggctattacttgtcttcttatggtgcttactttagatgtcatccttaccccacaagcctcggccacctttaccagcgcaaaacttttgttgaaagtt |
55458584 |
T |
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| Q |
643 |
tgataattaaacagtagagtagtgcagaggatgcttaattaaatgtgctcgagtaggacttgttgtttagtcgtaggacataataatgccattggcagtc |
742 |
Q |
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| T |
55458585 |
tgataattaaacagtagagtagtgcagaggatgcttaattaaatgtgctcgagtaggacttgttgtttagtcgtaggacataataataccat-------- |
55458676 |
T |
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| Q |
743 |
ctaatggcagtccctcaagtgagattgatagatacaaaattaaataggcattttgtatttatgcttttagagcctcgttgccttagcaaggagtaatgct |
842 |
Q |
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| T |
55458677 |
----tggcagtccctcaagtgagattgatagatacaaaattaaataggcattttgtatttatgcttttagagcctcgttgccttagcaaggagtaatgct |
55458772 |
T |
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| Q |
843 |
tcttcttcagccatgtaaa-cggcttgaatttgctgccatcatattctttataaagcccttcaggaataacatctaatgctctcaaggtgaaacatg-tt |
940 |
Q |
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| T |
55458773 |
tcttcttcagccatgtaaagcggcttgaatttgctgccatcatattctttataaagcccttcaggaataacatctaatgctctcaaggtgaaacatgttt |
55458872 |
T |
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| Q |
941 |
tac-atagaaaatagcagatcaaccaatg-ttttacacgacga |
981 |
Q |
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| T |
55458873 |
tacaatagaaaatagcagatcaaccaatgtttttacacgacga |
55458915 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 163; E-Value: 2e-86
Query Start/End: Original strand, 8 - 170
Target Start/End: Original strand, 55457950 - 55458112
Alignment:
| Q |
8 |
agagttgcctgtttgcttgctgaatcttcttctatgactttattgtgtgatttgattctccatcctcaactttttaggttccagtggcagctgttgtcat |
107 |
Q |
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| T |
55457950 |
agagttgcctgtttgcttgctgaatcttcttctatgactttattgtgtgatttgattctccatcctcaactttttaggttccagtggcagctgttgtcat |
55458049 |
T |
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| Q |
108 |
catggcatgtaatcgtgctgattacctggagaggactatcaattctgtattgaagtatgtttc |
170 |
Q |
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| T |
55458050 |
catggcatgtaatcgtgctgattacctggagaggactatcaattctgtattgaagtatgtttc |
55458112 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 115; Significance: 7e-58; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 115; E-Value: 7e-58
Query Start/End: Original strand, 751 - 908
Target Start/End: Original strand, 379353 - 379511
Alignment:
| Q |
751 |
agtccctcaagtgagattgatagatacaaaattaaataggcattttgtatttatgcttttagagcctcgttgccttagcaaggagtaatgcttcttcttc |
850 |
Q |
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|||||||| |||||||||||||||||||||||| |||| ||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||| |
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| T |
379353 |
agtccctcgagtgagattgatagatacaaaatttaatatgcattttgtatttatgcttttggagtctcgttgccttagcaaggagtaatgcttcttcttc |
379452 |
T |
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| Q |
851 |
agccat-gtaaacggcttgaatttgctgccatcatattctttataaagcccttcaggaa |
908 |
Q |
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| T |
379453 |
agccatggaaaatggcttgaatttgctgccattatattctttataaagcccttaaggaa |
379511 |
T |
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