View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4973-Insertion-2 (Length: 772)
Name: NF4973-Insertion-2
Description: NF4973
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4973-Insertion-2 |
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| [»] chr7 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 590; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 590; E-Value: 0
Query Start/End: Original strand, 8 - 772
Target Start/End: Complemental strand, 45039255 - 45038493
Alignment:
| Q |
8 |
aaaagagttcacaacactctttgaatcaagagtaaaaataacttgtttgaactctactttctacattcactcgatgcctattaataagcatgaagcctta |
107 |
Q |
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| T |
45039255 |
aaaagagttcacagcactctttgaatcaagagtaaaaataacttgtttgaactctaattcctacattcactcgatgcctattaataagcatgaagcctta |
45039156 |
T |
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| Q |
108 |
cccttctcaacattcaaaatagattgcaaccacaaattatgggctaccataaacatcttagactcatcccttaagcaaatcttaattccacccgtattgt |
207 |
Q |
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| T |
45039155 |
cccttctcaacattcaaaatagattgcaaccacaaattatgtgctaccataaacatcttagactcatccgttaagcaaatcctaattccacccgtattgt |
45039056 |
T |
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| Q |
208 |
ggtgctcnnnnnnngataagtcgattatgcacattaaaaggtactcttcaattcaatgttgatggtagttttttgagaaggccgtgagtgcataaatatc |
307 |
Q |
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| T |
45039055 |
agtgctcaaaaaaagataagtcgattatgcactttaaaaggtattcttcaattcaatgttgatggtagttttttgggaaggccgtgagtgcataa-tgtc |
45038957 |
T |
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| Q |
308 |
ggtggtattatttctactatgatgaaaaattagataaccgatttattttattatgaagttagagatgatacattgttagttgagttttgtgttatttaaa |
407 |
Q |
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| T |
45038956 |
ggcggtattatttctactatgatgaaaaattagataaccgatttattttattatgaagttagagatgatgcattgttagttgagttttgtgttatttaaa |
45038857 |
T |
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| Q |
408 |
cgagttttgatttttgttacaacaaagattataacaacatcatttgtgaaagtggttatttgaaaaccgctgaactacttattgctaatcttgatcatac |
507 |
Q |
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| T |
45038856 |
cgagtcttgatttttgttacaacaaagattataacaacatcatttgtgaaagtggttatttgaaaaccaccgaactacttattgttgatcttaatcatac |
45038757 |
T |
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| Q |
508 |
ttgacacacttatactacctacatccttcatattaaacatgcaaaatgataacattacattagtannnnnnnnnnnataaacaaaatatgagtacaaatt |
607 |
Q |
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| T |
45038756 |
ttgacacacttatactacttacatccttcatattaaacatgcaaaatgataacattacattagta-ttttttttttataaacaaaatatgagtacaaatt |
45038658 |
T |
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| Q |
608 |
ttataactaaattgagatcacattttattttaggtactttgagacgatccgtatttgatataaagtctctcataagtttcaaaattacttttgactcatt |
707 |
Q |
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| T |
45038657 |
ttataactaaaccgagatcacattttattttaggtactttgagacgatctgtatttgatataaagtctctcataagtttcaaaattatttttgactcatc |
45038558 |
T |
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| Q |
708 |
ttccagctgagcttataaaaagcatttcatcctcaaccagaaagcatgttgattgatcagcttat |
772 |
Q |
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| T |
45038557 |
ttcgagctgagcttacaaaaagcatttcatcctcaaccagaaagcatgttgattgatcagcttat |
45038493 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 36 - 135
Target Start/End: Original strand, 41060263 - 41060362
Alignment:
| Q |
36 |
agagtaaaaataacttgtttgaactctactttctacattcactcgatgcctattaataagcatgaagccttacccttctcaacattcaaaatagattgca |
135 |
Q |
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| T |
41060263 |
agagtaacgataacttgcttgaactctaattcccatatccactcgatgattattaataagcctgaagcctcatcctccttaacatttaaaataggttgca |
41060362 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 31; Significance: 0.00000007; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 9 - 63
Target Start/End: Complemental strand, 12158769 - 12158715
Alignment:
| Q |
9 |
aaagagttcacaacactctttgaatcaagagtaaaaataacttgtttgaactcta |
63 |
Q |
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| T |
12158769 |
aaagagtccacaacactctttgaatctaaagtaaagataactttgttgaactcta |
12158715 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 31; Significance: 0.00000007; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 359 - 461
Target Start/End: Original strand, 24015889 - 24015990
Alignment:
| Q |
359 |
tatgaagttagagatgatacattgttagttgagttttgtgttatttaaacgagttttgatttttgttacaacaaagattataacaacatcatttgtgaaa |
458 |
Q |
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| T |
24015889 |
tatgaagttggaggtgatgcattgttggttgagttgcgtgttattgaaatgtgtcttgatttttgttgtaatagag-ttataacaacattatttgtgaga |
24015987 |
T |
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| Q |
459 |
gtg |
461 |
Q |
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| T |
24015988 |
gtg |
24015990 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 14 - 63
Target Start/End: Complemental strand, 43804952 - 43804903
Alignment:
| Q |
14 |
gttcacaacactctttgaatcaagagtaaaaataacttgtttgaactcta |
63 |
Q |
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| T |
43804952 |
gttcacaacagtctttgaatctaaagtaaagataactggtttgaactcta |
43804903 |
T |
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