View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4973_high_1 (Length: 625)

Name: NF4973_high_1
Description: NF4973
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4973_high_1
NF4973_high_1
[»] chr5 (2 HSPs)
chr5 (79-470)||(33560251-33560652)
chr5 (467-605)||(33560701-33560839)
[»] chr2 (53 HSPs)
chr2 (94-402)||(39389548-39389865)
chr2 (105-460)||(39390791-39391147)
chr2 (473-605)||(39389355-39389487)
chr2 (487-571)||(39161600-39161684)
chr2 (487-571)||(39207510-39207594)
chr2 (467-563)||(39390636-39390732)
chr2 (123-280)||(39390519-39390676)
chr2 (467-563)||(39193015-39193111)
chr2 (467-563)||(39198695-39198791)
chr2 (309-464)||(39222109-39222265)
chr2 (141-403)||(39221164-39221426)
chr2 (143-307)||(39136625-39136789)
chr2 (309-464)||(39221899-39222055)
chr2 (477-592)||(39389935-39390050)
chr2 (131-193)||(39222300-39222362)
chr2 (371-475)||(39136988-39137093)
chr2 (553-604)||(39415022-39415073)
chr2 (86-200)||(38792901-38793015)
chr2 (125-191)||(39415161-39415227)
chr2 (467-568)||(39221480-39221581)
chr2 (158-286)||(39390303-39390431)
chr2 (371-470)||(39415634-39415734)
chr2 (140-342)||(39415889-39416100)
chr2 (125-219)||(39221664-39221758)
chr2 (368-453)||(39398145-39398231)
chr2 (369-470)||(39451570-39451672)
chr2 (523-605)||(39473648-39473730)
chr2 (131-220)||(38792694-38792783)
chr2 (374-470)||(39222300-39222397)
chr2 (161-286)||(39451731-39451856)
chr2 (511-560)||(39458563-39458612)
chr2 (134-194)||(39136868-39136928)
chr2 (131-191)||(39221880-39221940)
chr2 (131-191)||(39222090-39222150)
chr2 (537-601)||(39414941-39415005)
chr2 (537-593)||(39487701-39487757)
chr2 (371-465)||(39389862-39389957)
chr2 (171-262)||(39415132-39415223)
chr2 (22-68)||(39193077-39193123)
chr2 (22-68)||(39198757-39198803)
chr2 (523-605)||(39222292-39222374)
chr2 (153-195)||(39390184-39390226)
chr2 (384-465)||(39390702-39390784)
chr2 (314-407)||(39192678-39192771)
chr2 (314-407)||(39198358-39198451)
chr2 (372-460)||(39222634-39222723)
chr2 (130-219)||(39415769-39415858)
chr2 (125-190)||(39487872-39487937)
chr2 (511-563)||(39136593-39136645)
chr2 (537-601)||(39137618-39137682)
chr2 (371-407)||(39390635-39390671)
chr2 (473-605)||(39415531-39415663)
chr2 (371-407)||(39458484-39458520)
[»] chr7 (4 HSPs)
chr7 (143-310)||(19806986-19807153)
chr7 (130-194)||(19807225-19807289)
chr7 (511-563)||(19806954-19807006)
chr7 (537-601)||(19807568-19807632)
[»] chr8 (1 HSPs)
chr8 (539-605)||(44951225-44951291)
[»] scaffold0250 (1 HSPs)
scaffold0250 (569-605)||(4274-4310)
[»] chr3 (1 HSPs)
chr3 (130-190)||(51575132-51575192)


Alignment Details
Target: chr5 (Bit Score: 246; Significance: 1e-136; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 246; E-Value: 1e-136
Query Start/End: Original strand, 79 - 470
Target Start/End: Original strand, 33560251 - 33560652
Alignment:
Q  79 gaagcatttcgaaaaccaaatgaaggagcagatattgaaataggagcattgtgaaaaccaaatgaaggagcttcagtccaaagagaagcaacttgaaggc 178  Q
    |||| |||| ||||||||||||||||||||  |||||||| |||||||||| |||| ||||||||||||||||||||| |||||||||||||||||||||    
T  33560251 gaaggattttgaaaaccaaatgaaggagcatgtattgaaacaggagcattgagaaagccaaatgaaggagcttcagtcaaaagagaagcaacttgaaggc 33560350  T
Q  179 cgagtgaaggagcatgagtcaagggagaaggaatttgaaggttgtgtgaaggagatggaatataaagagaagcatttcgaaagcatggtggaggagctca 278  Q
    ||| |||| ||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  33560351 cgattgaatgagcatgagtcaaaggagaaggaatttgaaggctgtgtgaaggagatggaatataaagcgaagcatttcgaaagcatggtggaggagctca 33560450  T
Q  279 aatcaaaattgaggctatttaaagaac---------aacttgattctaaagagaagcaacttgatggtcaagtgaagtagctagaatctnnnnnnnncca 369  Q
    ||||||||||||||   || |||||||         |||||||||||||||||||||||||||||||||| |||||| |||| ||||||        |||    
T  33560451 aatcaaaattgaggtcgttgaaagaacaacttcaagaacttgattctaaagagaagcaacttgatggtcaggtgaaggagctggaatctaaaaagaacca 33560550  T
Q  370 ctttgaaagacaagtgaaggagtttgagtcaaaagagagtcaacttctaggccaactgaaggagtttaaa-tcaaaaagaaggaatttgaaggccaactg 468  Q
    ||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||| | |||||||||||||||||||||||||||    
T  33560551 ctttgaaagacaagttaaggagtttgagtcaaaagagagtcaacttgtaggccaactgaaggagtttaaattaaaaaagaaggaatttgaaggccaactg 33560650  T
Q  469 aa 470  Q
    ||    
T  33560651 aa 33560652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 123; E-Value: 7e-63
Query Start/End: Original strand, 467 - 605
Target Start/End: Original strand, 33560701 - 33560839
Alignment:
Q  467 tgaatgaaaagagaaggagcttgaatgccaaatgatggacttgctatcaaaacaggagcatgtcgaaaaccaaatgaaggagcttgagtcaaaagaggag 566  Q
    ||||| ||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||    
T  33560701 tgaatcaaaagagaaggagtttgaatgccaaatgatggacttgctatcaaaacagaagcatgtcgaaaaccaaatgaaggagctcgagtcaaaagaggag 33560800  T
Q  567 aaattcaaaggacaagtgaaggagtttcaatcaaaagag 605  Q
    |||||||||||||||||||||||||||||||||||||||    
T  33560801 aaattcaaaggacaagtgaaggagtttcaatcaaaagag 33560839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 118; Significance: 7e-60; HSPs: 53)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 118; E-Value: 7e-60
Query Start/End: Original strand, 94 - 402
Target Start/End: Complemental strand, 39389865 - 39389548
Alignment:
Q  94 ccaaatgaaggagcagatattgaaataggagcattgtgaaaaccaaatgaaggagcttcagtccaaagagaagcaacttgaaggccgagtgaaggagcat 193  Q
    ||||||| |||||||| |||||||| || |||||| | ||| |||||||||||||||| |||| |||| |||||||||||||| || | || ||||||||    
T  39389865 ccaaatggaggagcaggtattgaaacagaagcattataaaagccaaatgaaggagcttgagtcaaaagggaagcaacttgaagaccaattgcaggagcat 39389766  T
Q  194 gagtcaagggagaaggaatttgaaggttgtgtgaaggagatggaatataaagagaagcatttcgaaagcatggtggaggagctcaaatcaaaattgaggc 293  Q
    || |||| |||||||||||||||||||   | ||||||| |||||| |||| |||||||||||||||||||| ||| |||||||||||||||||||||||    
T  39389765 gaatcaaaggagaaggaatttgaaggtcaagcgaaggagctggaatctaaaaagaagcatttcgaaagcatgatggtggagctcaaatcaaaattgaggc 39389666  T
Q  294 tatttaaagaac---------aacttgattctaaagagaagcaacttgatggtcaagtgaagtagctagaatctnnnnnnnnccactttgaaagacaagt 384  Q
    |||| |||| ||         || |||| || |||||||||||||||||||| ||||||||| || | ||||||        ||||||||||||||||||    
T  39389665 tattgaaagtacaatttcaggaatttgactccaaagagaagcaacttgatggccaagtgaaggaggtggaatctaaaaaggaccactttgaaagacaagt 39389566  T
Q  385 gaaggagtttgagtcaaa 402  Q
    ||  ||||||||||||||    
T  39389565 gatagagtttgagtcaaa 39389548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 110; E-Value: 4e-55
Query Start/End: Original strand, 105 - 460
Target Start/End: Complemental strand, 39391147 - 39390791
Alignment:
Q  105 agcagatattgaaataggagcattgtgaaaaccaaatgaaggagcttcagtccaaagagaagcaacttgaaggccgagtgaaggagcatgagtcaaggga 204  Q
    ||||| |||||||  || |||||||||||| |||||||||||||||| ||||||||||||| ||||||||||||| | ||||||||||||| | || |||    
T  39391147 agcaggtattgaagcagaagcattgtgaaagccaaatgaaggagcttgagtccaaagagaaacaacttgaaggccaattgaaggagcatgaattaaagga 39391048  T
Q  205 gaaggaatttgaaggttgtgtgaaggagatggaatataaagagaagcatttcgaaagcatggtggaggagctcaaatcaaaattgaggctatttaaagaa 304  Q
    |||||||||||||||  |||         |||||| |||| |||||||||||||| ||||| |||||||||||||||||| | |||||   || ||||||    
T  39391047 gaaggaatttgaaggccgtg---------tggaatctaaaaagaagcatttcgaaggcatgatggaggagctcaaatcaagaatgaggtctttgaaagaa 39390957  T
Q  305 c---------aacttgattctaaagagaagcaacttgatggtcaagtgaagtagctagaatctnnnnnnnnccactttgaaagacaagtgaaggagtttg 395  Q
    |         ||||||| |||||||||||||||||||||  |||| | ||  |||||||||||        | ||||||||| ||| |||||||||||||    
T  39390956 caagttgaggaacttgactctaaagagaagcaacttgatcatcaaattaaagagctagaatctaaaaaggactactttgaaaaacaggtgaaggagtttg 39390857  T
Q  396 agtcaaaagagagtcaacttctaggccaactgaaggagtttaaatc-aaaaagaaggaatttgaag 460  Q
    ||||||||||||||||||||  ||||| | ||||||| ||| |||| |||||||||||||||||||    
T  39390856 agtcaaaagagagtcaacttgaaggccgagtgaaggaatttgaatcaaaaaagaaggaatttgaag 39390791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 473 - 605
Target Start/End: Complemental strand, 39389487 - 39389355
Alignment:
Q  473 aaaagagaaggagcttgaatgccaaatgatggacttgctatcaaaacaggagcatgtcgaaaaccaaatgaaggagcttgagtcaaaagaggagaaattc 572  Q
    |||||| |||||  ||||||||||||||||||||||||||||||| ||| ||| | ||||||||||||||||||||||||||||||||||||||||||||    
T  39389487 aaaagaaaaggaatttgaatgccaaatgatggacttgctatcaaatcagaagcgtatcgaaaaccaaatgaaggagcttgagtcaaaagaggagaaattc 39389388  T
Q  573 aaaggacaagtgaaggagtttcaatcaaaagag 605  Q
     ||||| ||||||||||||||||||||||||||    
T  39389387 gaaggaaaagtgaaggagtttcaatcaaaagag 39389355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 487 - 571
Target Start/End: Original strand, 39161600 - 39161684
Alignment:
Q  487 ttgaatgccaaatgatggacttgctatcaaaacaggagcatgtcgaaaaccaaatgaaggagcttgagtcaaaagaggagaaatt 571  Q
    ||||| |||||||||||||||||||||||||| || |||||||||||||||||||| ||||||||||||||||||||||| ||||    
T  39161600 ttgaaggccaaatgatggacttgctatcaaaagagaagcatgtcgaaaaccaaatgtaggagcttgagtcaaaagaggaggaatt 39161684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 487 - 571
Target Start/End: Complemental strand, 39207594 - 39207510
Alignment:
Q  487 ttgaatgccaaatgatggacttgctatcaaaacaggagcatgtcgaaaaccaaatgaaggagcttgagtcaaaagaggagaaatt 571  Q
    ||||| |||||||||||||||||||||||||| || |||||||||||||||||||| ||||||||||||||||||||||| ||||    
T  39207594 ttgaaggccaaatgatggacttgctatcaaaagagaagcatgtcgaaaaccaaatgtaggagcttgagtcaaaagaggaggaatt 39207510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 61; E-Value: 7e-26
Query Start/End: Original strand, 467 - 563
Target Start/End: Complemental strand, 39390732 - 39390636
Alignment:
Q  467 tgaatgaaaagagaaggagcttgaatgccaaatgatggacttgctatcaaaacaggagcatgtcgaaaaccaaatgaaggagcttgagtcaaaagag 563  Q
    ||||| ||||||||||||  ||||||||||||||||||| ||||||||||||||| ||||| | |||| ||||||||||||| ||||||||||||||    
T  39390732 tgaatcaaaagagaaggaatttgaatgccaaatgatggatttgctatcaaaacagaagcattttgaaagccaaatgaaggagtttgagtcaaaagag 39390636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 123 - 280
Target Start/End: Complemental strand, 39390676 - 39390519
Alignment:
Q  123 agcattgtgaaaaccaaatgaaggagcttcagtccaaagagaagcaacttgaaggccgagtgaaggagcatgagtcaagggagaaggaatttgaaggttg 222  Q
    |||||| ||||| ||||||||||||| || |||| ||||||||||||| |||| ||||||||||||||||||| ||||  ||||  |||||||||||       
T  39390676 agcattttgaaagccaaatgaaggagtttgagtcaaaagagaagcaacatgaaagccgagtgaaggagcatgaatcaaaagagagagaatttgaaggcca 39390577  T
Q  223 tgtgaaggagatggaatataaagagaagcatttcgaaagcatggtggaggagctcaaa 280  Q
      |||||||  |||||| ||||  ||||||||| ||||||   |||||||||||||||    
T  39390576 aatgaaggaactggaatctaaaaggaagcattttgaaagccaagtggaggagctcaaa 39390519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 467 - 563
Target Start/End: Complemental strand, 39193111 - 39193015
Alignment:
Q  467 tgaatgaaaagagaaggagcttgaatgccaaatgatggacttgctatcaaaacaggagcatgtcgaaaaccaaatgaaggagcttgagtcaaaagag 563  Q
    ||||| ||||||||||||  ||||||||||||||| ||||| | ||||||||||||||||| |||||||||  |||||||| ||||| | |||||||    
T  39193111 tgaatcaaaagagaaggaatttgaatgccaaatgacggactcggtatcaaaacaggagcatttcgaaaaccggatgaaggatcttgaattaaaagag 39193015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 467 - 563
Target Start/End: Complemental strand, 39198791 - 39198695
Alignment:
Q  467 tgaatgaaaagagaaggagcttgaatgccaaatgatggacttgctatcaaaacaggagcatgtcgaaaaccaaatgaaggagcttgagtcaaaagag 563  Q
    ||||| ||||||||||||  ||||||||||||||| ||||| | ||||||||||||||||| |||||||||  |||||||| ||||| | |||||||    
T  39198791 tgaatcaaaagagaaggaatttgaatgccaaatgacggactcggtatcaaaacaggagcatttcgaaaaccggatgaaggatcttgaattaaaagag 39198695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 309 - 464
Target Start/End: Original strand, 39222109 - 39222265
Alignment:
Q  309 ttgattctaaagagaagcaacttgatggtcaagtgaagtagctagaatctnnnnnnnnccactttgaaagacaagtgaaggagtttgagtcaaaagagag 408  Q
    |||| ||||||||||||||||||||| | ||||||||| |||| ||||||         |  |||||||| ||||||||||||||  |||||||||| |     
T  39222109 ttgagtctaaagagaagcaacttgatagccaagtgaaggagctggaatctaaaaagaagctgtttgaaagccaagtgaaggagttaaagtcaaaagataa 39222208  T
Q  409 tcaacttctaggccaactgaaggagtttaaatcaaaa-agaaggaatttgaaggcca 464  Q
     |||||| |||||||| ||| | |||||||||||||| ||| |||||||||||||||    
T  39222209 ccaacttgtaggccaattgaggaagtttaaatcaaaagagagggaatttgaaggcca 39222265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 141 - 403
Target Start/End: Original strand, 39221164 - 39221426
Alignment:
Q  141 tgaaggagcttcagtccaaagagaagcaacttgaaggccgagtgaaggagcatgagtcaagggagaaggaatttgaaggttgtgtgaaggagatggaata 240  Q
    |||||||| || | || ||| ||||| || ||||||| ||| ||||||||||||| |||| |||||||||| |||||||  |||||         ||||     
T  39221164 tgaaggagtttgaatcaaaacagaaggaatttgaaggtcgattgaaggagcatgaatcaaaggagaaggaacttgaaggccgtgtg---------gaatc 39221254  T
Q  241 taaagagaagcatttcgaaagcatggtggaggagctcaaatcaaaattgaggctatttaaagaac---------aacttgattctaaagagaagcaactt 331  Q
    |||| |||||||||||||||||||| ||||||||||||||||||   ||||   ||| |||| ||         ||||||| || |||||||||||||||    
T  39221255 taaaaagaagcatttcgaaagcatgatggaggagctcaaatcaagcatgagttcattgaaaggacaggttgaggaacttgactccaaagagaagcaactt 39221354  T
Q  332 gatggtcaagtgaagtagctagaatctnnnnnnnnccactttgaaagacaagtgaaggagtttgagtcaaaa 403  Q
    ||||| ||||||||| |||| ||||||         ||||||||||| || |||||||||||||| ||||||    
T  39221355 gatggccaagtgaaggagctggaatctcaaaagaatcactttgaaagtcaggtgaaggagtttgaatcaaaa 39221426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 143 - 307
Target Start/End: Original strand, 39136625 - 39136789
Alignment:
Q  143 aaggagcttcagtccaaagagaagcaacttgaaggccgagtgaaggagcatgagtcaagggagaaggaatttgaaggttgtgtgaaggagatggaatata 242  Q
    ||||||||| |||| ||||||| |||||||||||||||| ||||||||||||| |     || || |||||||||||  |  |||| ||| |||||| ||    
T  39136625 aaggagcttgagtcgaaagagaggcaacttgaaggccgattgaaggagcatgaattggaagaaaaagaatttgaaggccggatgaatgagctggaatcta 39136724  T
Q  243 aagagaagcatttcgaaagcatggtggaggagctcaaatcaaaattgaggctatttaaagaacaa 307  Q
    |||||| ||||||| |||||  |||||||||| ||||  ||||||||| || ||| |||| ||||    
T  39136725 aagagaggcatttcaaaagcgaggtggaggagatcaatgcaaaattgatgccattgaaaggacaa 39136789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 309 - 464
Target Start/End: Original strand, 39221899 - 39222055
Alignment:
Q  309 ttgattctaaagagaagcaacttgatggtcaagtgaagtagctagaatctnnnnnnnnccactttgaaagacaagtgaaggagtttgagtcaaaagagag 408  Q
    |||| ||||||||||||||||||||| | ||||||||| |||| ||||||         |  |||||||| ||||||||||||||  |||||||||| |     
T  39221899 ttgagtctaaagagaagcaacttgatagccaagtgaaggagctggaatctaaaaagaagctgtttgaaagccaagtgaaggagttaaagtcaaaagataa 39221998  T
Q  409 tcaacttctaggccaactgaaggagtttaaatcaaaa-agaaggaatttgaaggcca 464  Q
     |||||| |||||||| ||| | |||||||||||||| ||| | |||||||||||||    
T  39221999 ccaacttgtaggccaattgaggaagtttaaatcaaaagagaggcaatttgaaggcca 39222055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 477 - 592
Target Start/End: Complemental strand, 39390050 - 39389935
Alignment:
Q  477 gagaaggagcttgaatgccaaatgatggacttgctatcaaaacaggagcatgtcgaaaaccaaatgaaggagcttgagtcaaaagaggagaaa-ttcaaa 575  Q
    ||||||||  |||||||||||||||||||||||  |||||||||| || || | ||||||| ||||| ||||||||| |||||||| |||||| ||  ||    
T  39390050 gagaaggaatttgaatgccaaatgatggacttggcatcaaaacagaaggattttgaaaaccgaatgagggagcttgattcaaaaga-gagaaagtttgaa 39389952  T
Q  576 ggacaagtgaaggagtt 592  Q
    || ||||||||||||||    
T  39389951 ggccaagtgaaggagtt 39389935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 131 - 193
Target Start/End: Original strand, 39222300 - 39222362
Alignment:
Q  131 gaaaaccaaatgaaggagcttcagtccaaagagaagcaacttgaaggccgagtgaaggagcat 193  Q
    |||| ||||||||||||| || |||| |||||||||||||||||||||| |||||||||||||    
T  39222300 gaaagccaaatgaaggagtttgagtctaaagagaagcaacttgaaggccaagtgaaggagcat 39222362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 371 - 475
Target Start/End: Original strand, 39136988 - 39137093
Alignment:
Q  371 tttgaaagacaagtgaaggagtttgagtcaaaagagagtcaacttctaggccaactgaaggagtttaaatcaaaa-agaaggaatttgaaggccaactga 469  Q
    |||||||  ||||| |||| ||| ||||||||||| |  |||||| ||| |||| |||||||||||||||||||| ||| |||||||||||||||| |||    
T  39136988 tttgaaatccaagtcaaggcgttagagtcaaaagaaaaccaacttgtagaccaaatgaaggagtttaaatcaaaagagatggaatttgaaggccaaatga 39137087  T
Q  470 atgaaa 475  Q
    | ||||    
T  39137088 aggaaa 39137093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 553 - 604
Target Start/End: Complemental strand, 39415073 - 39415022
Alignment:
Q  553 agtcaaaagaggagaaattcaaaggacaagtgaaggagtttcaatcaaaaga 604  Q
    |||||||||||||| || ||||||||||||||||||||||| ||||||||||    
T  39415073 agtcaaaagaggaggaactcaaaggacaagtgaaggagtttgaatcaaaaga 39415022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 86 - 200
Target Start/End: Original strand, 38792901 - 38793015
Alignment:
Q  86 ttcgaaaaccaaatgaaggagcagatattgaaataggagcattgtgaaaaccaaatgaaggagcttcagtccaaagagaagcaacttgaaggccgagtga 185  Q
    ||||||| |||||||||||||| | |||||||| || ||||||  |||| |||||||||||| ||| |||  |||||||| |||  ||||| |||  |||    
T  38792901 ttcgaaagccaaatgaaggagctggtattgaaacagaagcatttcgaaagccaaatgaaggaacttgagttgaaagagaaccaaaatgaagaccggatga 38793000  T
Q  186 aggagcatgagtcaa 200  Q
    |||||||||| ||||    
T  38793001 aggagcatgactcaa 38793015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 125 - 191
Target Start/End: Complemental strand, 39415227 - 39415161
Alignment:
Q  125 cattgtgaaaaccaaatgaaggagcttcagtccaaagagaagcaacttgaaggccgagtgaaggagc 191  Q
    |||| ||||| || ||||||||||||| |||| ||||||||||||| |||||| |||||||||||||    
T  39415227 cattttgaaagccgaatgaaggagcttgagtcaaaagagaagcaacatgaaggtcgagtgaaggagc 39415161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 467 - 568
Target Start/End: Original strand, 39221480 - 39221581
Alignment:
Q  467 tgaatgaaaagagaaggagcttgaatgccaaatgatggacttgctatcaaaacaggagcatgtcgaaaaccaaatgaaggagcttgagtcaaaagaggag 566  Q
    ||||| ||||||||||||  |||||| || |||||||| || | ||||||||||||||||| | |||||||  |||||||| ||||| | ||||||| ||    
T  39221480 tgaatcaaaagagaaggaatttgaatacctaatgatgggctcggtatcaaaacaggagcattttgaaaaccggatgaaggatcttgaattaaaagagaag 39221579  T
Q  567 aa 568  Q
    ||    
T  39221580 aa 39221581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 158 - 286
Target Start/End: Complemental strand, 39390431 - 39390303
Alignment:
Q  158 aaagagaagcaacttgaaggccgagtgaaggagcatgagtcaagggagaaggaatttgaaggttgtgtgaaggagatggaatataaagagaagcatttcg 257  Q
    ||||||||||||| |||| ||||||||||||||||||  ||||  ||||  |||||||||||     |||||||  |||||| ||||  ||||||||| |    
T  39390431 aaagagaagcaacatgaaagccgagtgaaggagcatggatcaaaagagagagaatttgaaggccaaatgaaggaactggaatctaaaaggaagcattttg 39390332  T
Q  258 aaagcatggtggaggagctcaaatcaaaa 286  Q
    |||||   ||||||||||||||| |||||    
T  39390331 aaagccaagtggaggagctcaaaacaaaa 39390303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 371 - 470
Target Start/End: Complemental strand, 39415734 - 39415634
Alignment:
Q  371 tttgaaagacaagtgaaggagtttgagtcaaaagagagtcaacttctaggccaactgaaggagtttaaatcaaaa-agaaggaatttgaaggccaactga 469  Q
    |||||||  ||||| |||||||| |||||||||||    |||||  ||| |||| |||||||||||||||||||| ||| |||||||||||||||| |||    
T  39415734 tttgaaatccaagtcaaggagttagagtcaaaagaacagcaactcgtagaccaaatgaaggagtttaaatcaaaagagagggaatttgaaggccaaatga 39415635  T
Q  470 a 470  Q
    |    
T  39415634 a 39415634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 140 - 342
Target Start/End: Complemental strand, 39416100 - 39415889
Alignment:
Q  140 atgaaggagcttcagtccaaagagaagcaacttgaaggccgagtgaaggagcatgagtcaagggagaaggaatttgaaggttgtgtgaaggagatggaat 239  Q
    |||||||||||| |||| || ||||||||||||| ||||| | ||||||||||||| ||    || || ||||||||||   | ||||| ||| ||||||    
T  39416100 atgaaggagcttgagtctaatgagaagcaacttggaggccaattgaaggagcatgaatccgaagaaaaagaatttgaagaccgagtgaatgagctggaat 39416001  T
Q  240 ataaagagaagcatttcgaaagcatggtggaggagctcaaatcaaaattgaggctatttaaagaac---------aacttgattctaaagagaagcaact 330  Q
     |||||||| | ||||| | | |  |||||||||||||||  ||||||||| || ||| |||| ||         |||||| ||||||||||||||||||    
T  39416000 ctaaagagaggtatttcaataactgggtggaggagctcaatacaaaattgatgccattgaaaggacagtttaaggaacttgcttctaaagagaagcaact 39415901  T
Q  331 tgatggtcaagt 342  Q
     ||||| |||||    
T  39415900 cgatggccaagt 39415889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 125 - 219
Target Start/End: Original strand, 39221664 - 39221758
Alignment:
Q  125 cattgtgaaaaccaaatgaaggagcttcagtccaaagagaagcaacttgaaggccgagtgaaggagcatgagtcaagggagaaggaatttgaagg 219  Q
    |||| ||||| ||| ||||||||| || |||| ||||||||||||| ||||||| | |||||||||||||  ||||  ||||  |||||||||||    
T  39221664 cattttgaaagccagatgaaggagtttgagtcaaaagagaagcaacatgaaggctgggtgaaggagcatggatcaaaagagagagaatttgaagg 39221758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 368 - 453
Target Start/End: Complemental strand, 39398231 - 39398145
Alignment:
Q  368 cactttgaaagacaagtgaaggagtttgagtcaaaagagagtcaacttctaggccaactgaaggagtttaaa-tcaaaaagaaggaa 453  Q
    ||||||||||| ||| |||||||||| |||||||||||||  |||||| |||| | | |||||||||| ||| ||||| ||||||||    
T  39398231 cactttgaaagccaattgaaggagttagagtcaaaagagaaccaacttgtaggacgagtgaaggagttcaaattcaaagagaaggaa 39398145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 369 - 470
Target Start/End: Original strand, 39451570 - 39451672
Alignment:
Q  369 actttgaaagacaagtgaaggagtttgagtcaaaagagagtcaacttctaggccaactgaaggagtttaaat-caaaaagaaggaatttgaaggccaact 467  Q
    |||||| |||||||||||  ||||||||| ||||||||||||||||| | |||| | | || |||||| |||  ||||| |||||  |||||||||||||    
T  39451570 actttggaagacaagtgagagagtttgagacaaaagagagtcaacttgtgggccgagtaaacgagtttgaataaaaaaaaaaggagattgaaggccaact 39451669  T
Q  468 gaa 470  Q
    |||    
T  39451670 gaa 39451672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #27
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 523 - 605
Target Start/End: Complemental strand, 39473730 - 39473648
Alignment:
Q  523 agcatgtcgaaaaccaaatgaaggagcttgagtcaaaagaggagaaattcaaaggacaagtgaaggagtttcaatcaaaagag 605  Q
    ||||| |||| | |||| |||||||||| || ||||||||  ||||||| || ||||||||||||||||| || |||||||||    
T  39473730 agcatttcgagagccaactgaaggagctcgaatcaaaagaaaagaaatttaatggacaagtgaaggagttccagtcaaaagag 39473648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #28
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 131 - 220
Target Start/End: Original strand, 38792694 - 38792783
Alignment:
Q  131 gaaaaccaaatgaaggagcttcagtccaaagagaagcaacttgaaggccgagtgaaggagcatgagtcaagggagaaggaatttgaaggt 220  Q
    ||||||| ||||||||| ||| |||| ||||| ||||||  ||||||||| ||||||||||| || ||||  ||||  ||||||||||||    
T  38792694 gaaaaccgaatgaaggaccttgagtcgaaagaaaagcaatatgaaggccgggtgaaggagcacgaatcaaaagagagagaatttgaaggt 38792783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #29
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 374 - 470
Target Start/End: Original strand, 39222300 - 39222397
Alignment:
Q  374 gaaagacaagtgaaggagtttgagtcaaaagagagtcaacttctaggccaactgaaggagtttaaatcaaaa-agaaggaatttgaaggccaactgaa 470  Q
    ||||| ||| |||||||||||||||| |||||||  ||||||  ||||||| ||||||||  |||||||||| |||  | ||| ||||||||||||||    
T  39222300 gaaagccaaatgaaggagtttgagtctaaagagaagcaacttgaaggccaagtgaaggagcataaatcaaaagagagaggattcgaaggccaactgaa 39222397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #30
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 161 - 286
Target Start/End: Original strand, 39451731 - 39451856
Alignment:
Q  161 gagaagcaacttgaaggccgagtgaaggagcatgagtcaagggagaaggaatttgaaggttgtgtgaaggagatggaatataaagagaagcatttcgaaa 260  Q
    |||| ||||| ||| ||||| |||| ||||||||| ||||  | ||  |||||||||||    ||||||||  |||||| |||| |||||||||| ||||    
T  39451731 gagaggcaacatgagggccgggtgatggagcatgaatcaaaagtgagagaatttgaaggcaaagtgaaggatctggaatctaaaaagaagcattttgaaa 39451830  T
Q  261 gcatggtggaggagctcaaatcaaaa 286  Q
    ||   |||||||||||||||||||||    
T  39451831 gccaagtggaggagctcaaatcaaaa 39451856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #31
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 511 - 560
Target Start/End: Original strand, 39458563 - 39458612
Alignment:
Q  511 tatcaaaacaggagcatgtcgaaaaccaaatgaaggagcttgagtcaaaa 560  Q
    ||||||||||| ||||| |||||| || ||||||||||||||||||||||    
T  39458563 tatcaaaacagaagcatttcgaaagccgaatgaaggagcttgagtcaaaa 39458612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #32
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 134 - 194
Target Start/End: Original strand, 39136868 - 39136928
Alignment:
Q  134 aaccaaatgaaggagcttcagtccaaagagaagcaacttgaaggccgagtgaaggagcatg 194  Q
    |||| ||| ||||||||| |||| ||||||||||| | ||||||||| |||||||||||||    
T  39136868 aaccgaatcaaggagcttgagtcaaaagagaagcagcatgaaggccgggtgaaggagcatg 39136928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #33
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 131 - 191
Target Start/End: Original strand, 39221880 - 39221940
Alignment:
Q  131 gaaaaccaaatgaaggagcttcagtccaaagagaagcaacttgaaggccgagtgaaggagc 191  Q
    |||| ||||||||||||| || |||| |||||||||||||||||  ||| |||||||||||    
T  39221880 gaaagccaaatgaaggagtttgagtctaaagagaagcaacttgatagccaagtgaaggagc 39221940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #34
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 131 - 191
Target Start/End: Original strand, 39222090 - 39222150
Alignment:
Q  131 gaaaaccaaatgaaggagcttcagtccaaagagaagcaacttgaaggccgagtgaaggagc 191  Q
    |||| ||||||||||||| || |||| |||||||||||||||||  ||| |||||||||||    
T  39222090 gaaagccaaatgaaggagtttgagtctaaagagaagcaacttgatagccaagtgaaggagc 39222150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #35
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 537 - 601
Target Start/End: Complemental strand, 39415005 - 39414941
Alignment:
Q  537 caaatgaaggagcttgagtcaaaagaggagaaattcaaaggacaagtgaaggagtttcaatcaaa 601  Q
    |||||||||||| |  | |||||||||| | |||||||||| ||||||||||||||| |||||||    
T  39415005 caaatgaaggagttccactcaaaagagggggaattcaaaggtcaagtgaaggagtttgaatcaaa 39414941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #36
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 537 - 593
Target Start/End: Complemental strand, 39487757 - 39487701
Alignment:
Q  537 caaatgaaggagcttgagtcaaaagaggagaaattcaaaggacaagtgaaggagttt 593  Q
    |||||||||||| |  |||||||||||||| |||||| |||||| ||||||||||||    
T  39487757 caaatgaaggagttccagtcaaaagaggaggaattcagaggacacgtgaaggagttt 39487701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #37
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 371 - 465
Target Start/End: Complemental strand, 39389957 - 39389862
Alignment:
Q  371 tttgaaagacaagtgaaggagtttgagtcaaaagagagtcaacttctaggccaactgaaggagtttaaatcaaaa-agaaggaatttgaaggccaa 465  Q
    |||||| | |||||||||||||| ||||||||||| |  |||||| ||||| || ||| ||||||| |||||||| ||| || ||||||| |||||    
T  39389957 tttgaaggccaagtgaaggagttagagtcaaaagataaccaacttgtaggcaaaatgatggagtttgaatcaaaagagaggggatttgaatgccaa 39389862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #38
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 171 - 262
Target Start/End: Complemental strand, 39415223 - 39415132
Alignment:
Q  171 ttgaaggccgagtgaaggagcatgagtcaagggagaaggaatttgaaggttgtgtgaaggagatggaatataaagagaagcatttcgaaagc 262  Q
    ||||| ||||| ||||||||| ||||||||  |||||| ||  ||||||| | ||||||||| ||||||   || |||||||||||||||||    
T  39415223 ttgaaagccgaatgaaggagcttgagtcaaaagagaagcaacatgaaggtcgagtgaaggagctggaatcagaaaagaagcatttcgaaagc 39415132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #39
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 22 - 68
Target Start/End: Complemental strand, 39193123 - 39193077
Alignment:
Q  22 ggtggagaagtttgaatcaaaagagaaggattttcaatgccagatga 68  Q
    |||| ||||||||||||||||||||||||| ||| ||||||| ||||    
T  39193123 ggtgaagaagtttgaatcaaaagagaaggaatttgaatgccaaatga 39193077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #40
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 22 - 68
Target Start/End: Complemental strand, 39198803 - 39198757
Alignment:
Q  22 ggtggagaagtttgaatcaaaagagaaggattttcaatgccagatga 68  Q
    |||| ||||||||||||||||||||||||| ||| ||||||| ||||    
T  39198803 ggtgaagaagtttgaatcaaaagagaaggaatttgaatgccaaatga 39198757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #41
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 523 - 605
Target Start/End: Original strand, 39222292 - 39222374
Alignment:
Q  523 agcatgtcgaaaaccaaatgaaggagcttgagtcaaaagaggagaaattcaaaggacaagtgaaggagtttcaatcaaaagag 605  Q
    ||||| |||||| ||||||||||||| ||||||| |||||| || || |  |||| ||||||||||||  | |||||||||||    
T  39222292 agcatttcgaaagccaaatgaaggagtttgagtctaaagagaagcaacttgaaggccaagtgaaggagcataaatcaaaagag 39222374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #42
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 153 - 195
Target Start/End: Complemental strand, 39390226 - 39390184
Alignment:
Q  153 agtccaaagagaagcaacttgaaggccgagtgaaggagcatga 195  Q
    |||| ||||||||||||| |||| |||||||||||||||||||    
T  39390226 agtcaaaagagaagcaacatgaaagccgagtgaaggagcatga 39390184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #43
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 384 - 465
Target Start/End: Complemental strand, 39390784 - 39390702
Alignment:
Q  384 tgaaggagtttgagtcaaaagagagtcaacttctaggccaactgaaggagtttaaatcaaaa-agaaggaatttgaaggccaa 465  Q
    |||||||||||||||||||||| |   || || ||||| || | ||||||||| |||||||| |||||||||||||| |||||    
T  39390784 tgaaggagtttgagtcaaaagataacaaatttgtaggcaaagtaaaggagtttgaatcaaaagagaaggaatttgaatgccaa 39390702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #44
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 314 - 407
Target Start/End: Complemental strand, 39192771 - 39192678
Alignment:
Q  314 tctaaagagaagcaacttgatggtcaagtgaagtagctagaatctnnnnnnnnccactttgaaagacaagtgaaggagtttgagtcaaaagaga 407  Q
    ||||||||||||||||||||| | ||| ||||| |||| ||||||         |  |||||| | ||||||||||||||||||||||||||||    
T  39192771 tctaaagagaagcaacttgatagccaactgaaggagctggaatctaaaaagaagctatttgaatgccaagtgaaggagtttgagtcaaaagaga 39192678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #45
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 314 - 407
Target Start/End: Complemental strand, 39198451 - 39198358
Alignment:
Q  314 tctaaagagaagcaacttgatggtcaagtgaagtagctagaatctnnnnnnnnccactttgaaagacaagtgaaggagtttgagtcaaaagaga 407  Q
    ||||||||||||||||||||| | ||| ||||| |||| ||||||         |  |||||| | ||||||||||||||||||||||||||||    
T  39198451 tctaaagagaagcaacttgatagccaactgaaggagctggaatctaaaaagaagctatttgaatgccaagtgaaggagtttgagtcaaaagaga 39198358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #46
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 372 - 460
Target Start/End: Original strand, 39222634 - 39222723
Alignment:
Q  372 ttgaaagacaagtgaaggagtttgagtcaaaagagagtcaacttctaggccaactgaaggagtttaaatcaaa-aagaaggaatttgaag 460  Q
    ||||||| ||||| |||||||| ||||||||||| |  |||||| || || || | ||||||||| |||||||  |||||||||||||||    
T  39222634 ttgaaagccaagttaaggagttagagtcaaaagataaccaacttatatgcaaaataaaggagtttgaatcaaaggagaaggaatttgaag 39222723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #47
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 130 - 219
Target Start/End: Complemental strand, 39415858 - 39415769
Alignment:
Q  130 tgaaaaccaaatgaaggagcttcagtccaaagagaagcaacttgaaggccgagtgaaggagcatgagtcaagggagaaggaatttgaagg 219  Q
    |||||||| ||| ||||||||| | || ||||||||||| | ||||||||| ||||| |||||||  ||||  ||||  |||||||||||    
T  39415858 tgaaaaccgaatcaaggagcttgaatcaaaagagaagcagcatgaaggccgggtgaatgagcatgcatcaaaagagagagaatttgaagg 39415769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #48
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 125 - 190
Target Start/End: Complemental strand, 39487937 - 39487872
Alignment:
Q  125 cattgtgaaaaccaaatgaaggagcttcagtccaaagagaagcaacttgaaggccgagtgaaggag 190  Q
    |||| |||||||| || ||| ||| || |||| ||||||||||||||||| |||||| ||||||||    
T  39487937 cattttgaaaaccgaacgaatgagattgagtcaaaagagaagcaacttgatggccgaatgaaggag 39487872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #49
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 511 - 563
Target Start/End: Original strand, 39136593 - 39136645
Alignment:
Q  511 tatcaaaacaggagcatgtcgaaaaccaaatgaaggagcttgagtcaaaagag 563  Q
    ||||||||||| ||||| |||||| ||| || |||||||||||||| ||||||    
T  39136593 tatcaaaacagaagcatttcgaaagccatattaaggagcttgagtcgaaagag 39136645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #50
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 537 - 601
Target Start/End: Original strand, 39137618 - 39137682
Alignment:
Q  537 caaatgaaggagcttgagtcaaaagaggagaaattcaaaggacaagtgaaggagtttcaatcaaa 601  Q
    |||||||||||| |  |||||||||| ||| ||||||||| ||| |||||||| ||| |||||||    
T  39137618 caaatgaaggagttccagtcaaaagaagaggaattcaaagtacacgtgaaggattttgaatcaaa 39137682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #51
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 371 - 407
Target Start/End: Complemental strand, 39390671 - 39390635
Alignment:
Q  371 tttgaaagacaagtgaaggagtttgagtcaaaagaga 407  Q
    |||||||| ||| ||||||||||||||||||||||||    
T  39390671 tttgaaagccaaatgaaggagtttgagtcaaaagaga 39390635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #52
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 473 - 605
Target Start/End: Complemental strand, 39415663 - 39415531
Alignment:
Q  473 aaaagagaaggagcttgaatgccaaatgatggacttgctatcaaaacaggagcatgtcgaaaaccaaatgaaggagcttgagtcaaaagaggagaaattc 572  Q
    |||||||| |||  ||||| ||||||||| |||  ||  |||||||||| ||||| || |||    |||||||||||||||| |||||||| || ||       
T  39415663 aaaagagagggaatttgaaggccaaatgaaggaactggcatcaaaacagaagcatttcaaaaggagaatgaaggagcttgaggcaaaagagaagcaacat 39415564  T
Q  573 aaaggacaagtgaaggagtttcaatcaaaagag 605  Q
     |||| ||||||||||||| | |||||||||||    
T  39415563 gaaggtcaagtgaaggagtgtgaatcaaaagag 39415531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #53
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 371 - 407
Target Start/End: Original strand, 39458484 - 39458520
Alignment:
Q  371 tttgaaagacaagtgaaggagtttgagtcaaaagaga 407  Q
    |||||||||||||||||||| ||||| ||||||||||    
T  39458484 tttgaaagacaagtgaaggattttgaatcaaaagaga 39458520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 60; Significance: 3e-25; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 143 - 310
Target Start/End: Original strand, 19806986 - 19807153
Alignment:
Q  143 aaggagcttcagtccaaagagaagcaacttgaaggccgagtgaaggagcatgagtcaagggagaaggaatttgaaggttgtgtgaaggagatggaatata 242  Q
    ||||||||| |||| ||||||| |||||||||||||||| ||||||||||||| |||   ||  | |||||||||||  | ||||| ||| |||||| ||    
T  19806986 aaggagcttgagtcgaaagagaggcaacttgaaggccgattgaaggagcatgaatcagaagaacaagaatttgaaggccgagtgaatgagctggaatcta 19807085  T
Q  243 aagagaagcatttcgaaagcatggtggaggagctcaaatcaaaattgaggctatttaaagaacaactt 310  Q
    |||||| ||||||| |||||  |||||||||||||||  ||||||||| || ||| |||| |||||||    
T  19807086 aagagaggcatttcaaaagcgaggtggaggagctcaatacaaaattgatgccattgaaaggacaactt 19807153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 130 - 194
Target Start/End: Original strand, 19807225 - 19807289
Alignment:
Q  130 tgaaaaccaaatgaaggagcttcagtccaaagagaagcaacttgaaggccgagtgaaggagcatg 194  Q
    |||||||| ||| ||||||||| |||| ||||||||||| | |||||||||  ||||||||||||    
T  19807225 tgaaaaccgaatcaaggagcttgagtcaaaagagaagcagcatgaaggccggatgaaggagcatg 19807289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 511 - 563
Target Start/End: Original strand, 19806954 - 19807006
Alignment:
Q  511 tatcaaaacaggagcatgtcgaaaaccaaatgaaggagcttgagtcaaaagag 563  Q
    ||||||||||| ||||| |||||| ||| || |||||||||||||| ||||||    
T  19806954 tatcaaaacagaagcatttcgaaagccatattaaggagcttgagtcgaaagag 19807006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 537 - 601
Target Start/End: Original strand, 19807568 - 19807632
Alignment:
Q  537 caaatgaaggagcttgagtcaaaagaggagaaattcaaaggacaagtgaaggagtttcaatcaaa 601  Q
    |||||||||||| |  |||||||||| ||| ||||||||| ||| |||||||| ||| |||||||    
T  19807568 caaatgaaggagttccagtcaaaagaagaggaattcaaagcacacgtgaaggattttgaatcaaa 19807632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 31; Significance: 0.00000006; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 539 - 605
Target Start/End: Complemental strand, 44951291 - 44951225
Alignment:
Q  539 aatgaaggagcttgagtcaaaagaggagaaattcaaaggacaagtgaaggagtttcaatcaaaagag 605  Q
    |||||||||| |||| |||| |||  | |||||||||| ||||| |||||||||||| |||||||||    
T  44951291 aatgaaggagtttgaatcaagagaaaataaattcaaagaacaagagaaggagtttcagtcaaaagag 44951225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0250 (Bit Score: 29; Significance: 0.0000009; HSPs: 1)
Name: scaffold0250
Description:

Target: scaffold0250; HSP #1
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 569 - 605
Target Start/End: Original strand, 4274 - 4310
Alignment:
Q  569 attcaaaggacaagtgaaggagtttcaatcaaaagag 605  Q
    |||||||||||||| |||||||||||| |||||||||    
T  4274 attcaaaggacaagagaaggagtttcagtcaaaagag 4310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 29; Significance: 0.0000009; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 130 - 190
Target Start/End: Original strand, 51575132 - 51575192
Alignment:
Q  130 tgaaaaccaaatgaaggagcttcagtccaaagagaagcaacttgaaggccgagtgaaggag 190  Q
    ||||| |||| ||||||| ||  |||| |||||||| ||||||||||| ||||||||||||    
T  51575132 tgaaagccaagtgaaggatctcaagtcaaaagagaatcaacttgaaggtcgagtgaaggag 51575192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University