View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4973_high_2 (Length: 453)
Name: NF4973_high_2
Description: NF4973
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4973_high_2 |
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Alignment Details
Target: chr3 (Bit Score: 276; Significance: 1e-154; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 276; E-Value: 1e-154
Query Start/End: Original strand, 10 - 362
Target Start/End: Complemental strand, 2299555 - 2299204
Alignment:
| Q |
10 |
gcagagaccaataccaaaattgaatgaaaacgcagagactaatcacatatttaagtgaattagttattatcaataaaatagtgataatactccaccccta |
109 |
Q |
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| T |
2299555 |
gcagagaggaatgccaaaattgaatgaaagcgcacagattaatcacatatttaagtgaattagttattattaataaaatagtgataatactccaccccta |
2299456 |
T |
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| Q |
110 |
acatgcgagcatannnnnnnacgaactaccacatgttgtaaatgtttataattataaagacactattttcattaatacaaacagaatgttatggtgaatc |
209 |
Q |
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| T |
2299455 |
a-atgctagcatatttttttacgaactaccacatgttgtaaatgtttataattataaagacactattttcattaatacaaacagaatgatatggtgaatc |
2299357 |
T |
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| Q |
210 |
cccatctttaattatcttcactttagttgatgcatcattttcaaacagaagctgacacttttacatcttcatcttcatggagtacattttacaagtatat |
309 |
Q |
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| T |
2299356 |
cccatctttaattatcttcactttaattgatgcatcattttcaaacagaagttgacacttttacatcttcatcttcatggagtacattttacaagtatat |
2299257 |
T |
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| Q |
310 |
aaatacaagtaactgacatgcatatacgtgctaaagctcatcctcatcctcat |
362 |
Q |
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| T |
2299256 |
acatacaagtaactgacatgcatatacgtgctaaagctcatcctcatcctcat |
2299204 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 385 - 439
Target Start/End: Complemental strand, 2299027 - 2298973
Alignment:
| Q |
385 |
cctaatttttaaatactcattcactacaagtattcttatcatatcatctatttat |
439 |
Q |
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| T |
2299027 |
cctaatttttaaatactcattcactacaagtattcttatcatatcatctacttat |
2298973 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 34; Significance: 0.0000000007; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 10 - 63
Target Start/End: Original strand, 30419297 - 30419350
Alignment:
| Q |
10 |
gcagagaccaataccaaaattgaatgaaaacgcagagactaatcacatatttaa |
63 |
Q |
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| T |
30419297 |
gcagagattaatgccaaaattgaatgaaaatgcatagactaatcacatatttaa |
30419350 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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