View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4973_low_3 (Length: 417)
Name: NF4973_low_3
Description: NF4973
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4973_low_3 |
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| [»] chr4 (3 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 295; Significance: 1e-165; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 295; E-Value: 1e-165
Query Start/End: Original strand, 13 - 417
Target Start/End: Original strand, 45091931 - 45092351
Alignment:
| Q |
13 |
gataatactccatactgttaggaaattaactctagctgcgtgataaaatctgcaactcgaaaaacaaatgtgaannnnnnnn-cccgggcaaaatctcaa |
111 |
Q |
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||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||| |
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| T |
45091931 |
gataatactccatactgttaggagattaactctagctgcgtgataaaatgtgcaactcgaaaaacaaatgtgaatttttttttcccgggcaaaatctcaa |
45092030 |
T |
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| Q |
112 |
tctaatttcctactgttaattttactgcgtttgaaacctgacagacaatgttcatggttgttgtccttgggcccttcagatctggct------------- |
198 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45092031 |
tctaatttcctactgttaattttactgcgtttgaaacctgacagacaatgttcatggttgttgtccttgggcccttcagatctggctaattttactctag |
45092130 |
T |
|
| Q |
199 |
--tctgctgtttgtttattttctagtttatgtctttgttttgtctggtttaaggctgcactcttgttgtttgacaaaaagctccaaaagggttatgtctt |
296 |
Q |
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||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
45092131 |
cttctgctgtttgtttattttttagtttatgtctttgttttgtctggtttaaggctgcactcttgttgtttgacaaaaagccccaaaagggttatgtctt |
45092230 |
T |
|
| Q |
297 |
ttggaacaaagtagcctgtgtatgttggcaatcaatagtgactaaggaagcttacaaggctgactcccattgcaacaacttctttactcatacaccaact |
396 |
Q |
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|||||||||||||||| ||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||| | |
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| T |
45092231 |
ttggaacaaagtagccattgtatgttggcaatccatagtgactaaggaagcttacgaggctgactcccattgcaacaacttctttactcatccaccaatt |
45092330 |
T |
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| Q |
397 |
atcaaacatctggaaaatttg |
417 |
Q |
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| T |
45092331 |
atcaaacatctgaaaaatttg |
45092351 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 169 - 417
Target Start/End: Original strand, 24375849 - 24376097
Alignment:
| Q |
169 |
ttgttgtccttgggcccttcagatctggcttctgctgtttgtttattttctagtttatgtctttgttttgtctggtttaaggctgcactcttgttgtttg |
268 |
Q |
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| T |
24375849 |
ttgttgtccttgggcccttcagacctggcttctgttgtttgtttattttctagtttatgtctttgttttgtctggtttaaggctgcactcttgttgtttg |
24375948 |
T |
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| Q |
269 |
acaaaaagctccaaaagggttatgtcttttggaacaaagtagcctgtgtatgttggcaatcaatagtgactaaggaagcttacaaggctgactcccattg |
368 |
Q |
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| T |
24375949 |
acaaaaagccccaaaagggttatgtcttttggaacaaagtagccagtgcatgttggcaatccatagtgactaaggaagcttacgaggctgactcccattg |
24376048 |
T |
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| Q |
369 |
caacaacttctttactcatacaccaactatcaaacatctggaaaatttg |
417 |
Q |
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||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
24376049 |
caacaacttctttactcatccaccaactatcaaacatctggaaaatttg |
24376097 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 169 - 417
Target Start/End: Original strand, 21781169 - 21781417
Alignment:
| Q |
169 |
ttgttgtccttgggcccttcagatctggcttctgctgtttgtttattttctagtttatgtctttgttttgtctggtttaaggctgcactcttgttgtttg |
268 |
Q |
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|||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
21781169 |
ttgttgtccttgggcccttcagatatggcttctgctgtttgtttattttatagtttatgtctttgttttgtctggtttaaggctgcactcttgttgtttg |
21781268 |
T |
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| Q |
269 |
acaaaaagctccaaaagggttatgtcttttggaacaaagtagcctgtgtatgttggcaatcaatagtgactaaggaagcttacaaggctgactcccattg |
368 |
Q |
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||||||||| ||||||| |||||||||||||||||||||||||| |||||||||||||||| |||||||||| |||| ||||| ||||||||| |||||| |
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| T |
21781269 |
acaaaaagccccaaaagagttatgtcttttggaacaaagtagccagtgtatgttggcaatccatagtgactagggaaacttacgaggctgacttccattg |
21781368 |
T |
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| Q |
369 |
caacaacttctttactcatacaccaactatcaaacatctggaaaatttg |
417 |
Q |
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||||||| |||||| |||| ||||||| ||||||||||||||||||||| |
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| T |
21781369 |
caacaacctctttaatcatccaccaaccatcaaacatctggaaaatttg |
21781417 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 147; Significance: 2e-77; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 147; E-Value: 2e-77
Query Start/End: Original strand, 175 - 413
Target Start/End: Complemental strand, 9106259 - 9106021
Alignment:
| Q |
175 |
tccttgggcccttcagatctggcttctgctgtttgtttattttctagtttatgtctttgttttgtctggtttaaggctgcactcttgttgtttgacaaaa |
274 |
Q |
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|||||||||||||||||| ||||||||||||||||||||| ||||||||||||||| |||||| ||| |||||||| |||| | |||||||||||||||| |
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| T |
9106259 |
tccttgggcccttcagatatggcttctgctgtttgtttatgttctagtttatgtctctgttttttctagtttaaggatgcatttttgttgtttgacaaaa |
9106160 |
T |
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| Q |
275 |
agctccaaaagggttatgtcttttggaacaaagtagcctgtgtatgttggcaatcaatagtgactaaggaagcttacaaggctgactcccattgcaacaa |
374 |
Q |
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| | |||||||||||||||||||||||||||||||||| ||||||||||||| | || |||||| |||||||| |||||||||||||||||||||| |
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| T |
9106159 |
atccccaaaagggttatgtcttttggaacaaagtagccaatgtatgttggcaacccatttatactaagaaagcttacgaggctgactcccattgcaacaa |
9106060 |
T |
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| Q |
375 |
cttctttactcatacaccaactatcaaacatctggaaaa |
413 |
Q |
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||||||||||||| ||| | ||||||||||||||||||| |
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| T |
9106059 |
cttctttactcatccactagctatcaaacatctggaaaa |
9106021 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 118; E-Value: 4e-60
Query Start/End: Original strand, 172 - 413
Target Start/End: Complemental strand, 11789024 - 11788783
Alignment:
| Q |
172 |
ttgtccttgggcccttcagatctggcttctgctgtttgtttattttctagtttatgtctttgttttgtctggtttaaggctgcactcttgttgtttgaca |
271 |
Q |
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|||||||||||| |||||||| ||| |||||||||| |||| |||||||||||||||||||||| ||| ||||||| ||||| ||| |||||||||| |
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| T |
11789024 |
ttgtccttgggcgcttcagatatggtttctgctgttggttttatttctagtttatgtctttgtttatcctgttttaaggatgcacgctttttgtttgaca |
11788925 |
T |
|
| Q |
272 |
aaaagctccaaaagggttatgtcttttggaacaaagtagcctgtgtatgttggcaatcaatagtgactaaggaagcttacaaggctgactcccattgcaa |
371 |
Q |
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||||| |||| ||||||||||||||||||||||||||||| |||||||||||||||| |||| |||||||||||||| | |||||| | |||||||||| |
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| T |
11788924 |
aaaagacccaagagggttatgtcttttggaacaaagtagccagtgtatgttggcaatccatagagactaaggaagcttccgaggctggcccccattgcaa |
11788825 |
T |
|
| Q |
372 |
caacttctttactcatacaccaactatcaaacatctggaaaa |
413 |
Q |
| |
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||| ||| | |||| ||||| || |||||||||||||||| |
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| T |
11788824 |
caatctctcttttcatccaccagctgtcaaacatctggaaaa |
11788783 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 55; Significance: 2e-22; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 239 - 309
Target Start/End: Complemental strand, 32021370 - 32021300
Alignment:
| Q |
239 |
tctggtttaaggctgcactcttgttgtttgacaaaaagctccaaaagggttatgtcttttggaacaaagta |
309 |
Q |
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||||||||||||||||||||| ||||||||||||||||| ||| |||||||||||||||||||||||||| |
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| T |
32021370 |
tctggtttaaggctgcactctagttgtttgacaaaaagcaccatgagggttatgtcttttggaacaaagta |
32021300 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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