View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4973_low_5 (Length: 221)
Name: NF4973_low_5
Description: NF4973
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4973_low_5 |
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Alignment Details
Target: chr5 (Bit Score: 170; Significance: 2e-91; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 170; E-Value: 2e-91
Query Start/End: Original strand, 19 - 200
Target Start/End: Original strand, 10210455 - 10210636
Alignment:
| Q |
19 |
cacagagcaattttgatacatctggctgtatgaaactcctggacctggtgatgcatattcccttagccaccattcctttaatatctctctgactcaacat |
118 |
Q |
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| T |
10210455 |
cacagagcaattttgatacatctagttgtatgaaactcctggacctggtgatgcatattcccttagccaccattcctttaatatctctctgactcaacat |
10210554 |
T |
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| Q |
119 |
ctgcagcctttcactggaaatatctttaggagacaaagacggcatcggtcggcgatggtggaatcgtgaagaatgggttcag |
200 |
Q |
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| T |
10210555 |
ctgcagcctttcactggatatatctttaggagacaaagacggcatcggtcggcgatggtggaatcgtgaagaatgggttcag |
10210636 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 108; E-Value: 2e-54
Query Start/End: Original strand, 61 - 200
Target Start/End: Complemental strand, 10108665 - 10108529
Alignment:
| Q |
61 |
acctggtgatgcatattcccttagccaccattccttt-aatatctctctgactcaacatctgcagcctttcactggaaatatctttaggagacaaagacg |
159 |
Q |
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|||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10108665 |
accttgtgatgcatattcccttagccaccattccttttaatatctctctgactcaacatctgcagcctttcactggaaatatctttaggagacaaagacg |
10108566 |
T |
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| Q |
160 |
gcatcggtcggcgatggtggaatcgtgaagaatgggttcag |
200 |
Q |
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| T |
10108565 |
g----tgtcggcgatggtggaatcgtgaagaatgggttcag |
10108529 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 99; E-Value: 5e-49
Query Start/End: Original strand, 19 - 157
Target Start/End: Original strand, 10216249 - 10216386
Alignment:
| Q |
19 |
cacagagcaattttgatacatctggctgtatgaaactcctggacctggtgatgcatattcccttagccaccattcctttaatatctctctgactcaacat |
118 |
Q |
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||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| || |||||||||| |
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| T |
10216249 |
cacagagcaattt-gatacatctggctgtatgaaactcctggaccttgtgatgcatattcccttagccaccattcctttaatatctttcagactcaacat |
10216347 |
T |
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| Q |
119 |
ctgcagcctttcactggaaatatctttaggagacaaaga |
157 |
Q |
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| T |
10216348 |
cttcaacatttcactggaaaaatcattaggagacaaaga |
10216386 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 19 - 121
Target Start/End: Original strand, 9683075 - 9683170
Alignment:
| Q |
19 |
cacagagcaattttgatacatctggctgtatgaaactcctggacctggtgatgcatattcccttagccaccattcctttaatatctctctgactcaacat |
118 |
Q |
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||||||||||||| ||||||||||||| |||| ||||||| | |||||||||||||| |||| |||||||||||||| ||| ||||||||||| |
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| T |
9683075 |
cacagagcaattt-gatacatctggctttatggaactccttg------tgatgcatattcccctagcaaccattcctttaatgtctacatgactcaacat |
9683167 |
T |
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