View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4973_low_6 (Length: 203)
Name: NF4973_low_6
Description: NF4973
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4973_low_6 |
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Alignment Details
Target: chr4 (Bit Score: 172; Significance: 1e-92; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 172; E-Value: 1e-92
Query Start/End: Original strand, 14 - 185
Target Start/End: Original strand, 45092699 - 45092870
Alignment:
| Q |
14 |
gacaatgttcatggtaagcatggcttgctatcaccaccagcaattgcttctctctcgaattagctagataatcagtcaagtaaggcttctcctgtgaatg |
113 |
Q |
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| T |
45092699 |
gacaatgttcatggtaagcatggcttgctatcaccaccagcaattgcttctctctcgaattagctagataatcagtcaagtaaggcttctcctgtgaatg |
45092798 |
T |
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| Q |
114 |
catagtatcagaacttctttaactcaagagaaagcgatttactgtcgaccagcttgtaacttacagttgtgt |
185 |
Q |
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| T |
45092799 |
catagtatcagaacttctttaactcaagagaaagcgatttactgtcgaccagcttgtaacttacagttgtgt |
45092870 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 51 - 116
Target Start/End: Original strand, 45567638 - 45567703
Alignment:
| Q |
51 |
cagcaattgcttctctctcgaattagctagataatcagtcaagtaaggcttctcctgtgaatgcat |
116 |
Q |
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| T |
45567638 |
cagcaattgcttctctctgaaattagctagaaaatcagtcatgtaatgcttctgctgtgaatgcat |
45567703 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 117 - 185
Target Start/End: Original strand, 45567731 - 45567800
Alignment:
| Q |
117 |
agtatcagaact-tctttaactcaagagaaagcgatttactgtcgaccagcttgtaacttacagttgtgt |
185 |
Q |
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| T |
45567731 |
agtatcagaacaatctttaattcaagacaaagcgatttactgtctatcagctggtaacttacagttgtgt |
45567800 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 31 - 110
Target Start/End: Original strand, 45087175 - 45087253
Alignment:
| Q |
31 |
gcatggcttgctatcaccaccagcaattgcttctctctcgaattagctagataatcagtcaagtaaggcttctcctgtga |
110 |
Q |
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| T |
45087175 |
gcatgccttgctatcaccaccagcaattttctctctctggaattagctaga-aatcagccaagtaatgcctctgctgtga |
45087253 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 31 - 66
Target Start/End: Complemental strand, 35817547 - 35817512
Alignment:
| Q |
31 |
gcatggcttgctatcaccaccagcaattgcttctct |
66 |
Q |
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| T |
35817547 |
gcatggtttgctatcaccaccagcaattgcttctct |
35817512 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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