View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4974-Insertion-1 (Length: 987)
Name: NF4974-Insertion-1
Description: NF4974
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4974-Insertion-1 |
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Alignment Details
Target: chr2 (Bit Score: 228; Significance: 1e-125; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 228; E-Value: 1e-125
Query Start/End: Original strand, 654 - 933
Target Start/End: Original strand, 4098366 - 4098649
Alignment:
| Q |
654 |
cacataatgtattccaagcaatttaatgtactttttattcatcttgtttgcatcaccaccaaaatttacaaatcatgctttcaatgtggtcgcaaaagct |
753 |
Q |
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| T |
4098366 |
cacataacgtattccaagcaatttaatgtactttttattcatcttgtttgcatcaccatcaaaatttacaaatcatgctttcaatgtggtcgcaaaagct |
4098465 |
T |
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| Q |
754 |
atccggaagctttaaaaaactcatgacataagtaggaatgacttgaataactgctttaataaggacctccctcgctgaaaaaggtaagaag-ttcatttc |
852 |
Q |
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| T |
4098466 |
atccggaagctttaaaaaactcatgacataagtaggaatgacttaaataactgctttaataaggaccttccccgctgaaaaaggtaagaagtttcatttc |
4098565 |
T |
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| Q |
853 |
cacccttttagtttcttccaccccatatctt-ggaaaagttgaatacttgttg-tttgactttcctac-aaagcccctctagca |
933 |
Q |
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| T |
4098566 |
cacccttttagtttcttccaccccatatcttgggaaaagttgaatacttgttgttttgactttcctacaaaaacccctctagca |
4098649 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 213; E-Value: 1e-116
Query Start/End: Original strand, 8 - 261
Target Start/End: Original strand, 4097900 - 4098152
Alignment:
| Q |
8 |
acttcactgttattgttggtggtttgtatgccttttgtaacatgcaactgaaaatcatgttctgggattgtgatgtgtgctatgaacatgtttcttttaa |
107 |
Q |
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| T |
4097900 |
acttcactgttattgttggtggtttgtatgccttttgtaacatgcaactgaaaatcatgttctgggattgtgatgtgtgctatgaacatgttt-ttttaa |
4097998 |
T |
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| Q |
108 |
cannnnnnnagccttcaatattttattggataaaattaaccgtatctttcatatttttaaaatgaatttcatataaaatagtgagatcaacataaattgc |
207 |
Q |
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| T |
4097999 |
catttttttagccttcaatattttattggataaaattaaccgtatctttcatatttttaaaatgaatttcatataaaatagtgagatcaacataaattgc |
4098098 |
T |
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| Q |
208 |
attcaataaaatgttaaaagttaaaaacagagtgttttgattactactattact |
261 |
Q |
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| T |
4098099 |
attcaataaaatgataaatgttaaaaacagagtgttttggttactactattact |
4098152 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 74; E-Value: 2e-33
Query Start/End: Original strand, 551 - 624
Target Start/End: Original strand, 4098292 - 4098365
Alignment:
| Q |
551 |
aaattaccttcctttaaaacatgtgctcaataagatttcttcattctgcaaaatccgccaaccttgcttagcta |
624 |
Q |
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| T |
4098292 |
aaattaccttcctttaaaacatgtgctcaataagatttcttcattctgcaaaatccgccaaccttgcttagcta |
4098365 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 51; E-Value: 1e-19
Query Start/End: Original strand, 469 - 553
Target Start/End: Original strand, 4098152 - 4098246
Alignment:
| Q |
469 |
tcgttccaaattctaatattttggccat---------acattccggaatgatcgataactttatgtcttgc-tgtaggatgcttctccaagtaaa |
553 |
Q |
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| T |
4098152 |
tcgttccaaattctaatattttggccatcgaactaccacattccggaatgatcaataactttatgtcttgcttgtaggatgcttctccaagtaaa |
4098246 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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