View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4974-Insertion-10 (Length: 386)
Name: NF4974-Insertion-10
Description: NF4974
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4974-Insertion-10 |
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| [»] chr5 (1 HSPs) |
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| [»] chr2 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 368; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 368; E-Value: 0
Query Start/End: Original strand, 7 - 386
Target Start/End: Complemental strand, 1131602 - 1131223
Alignment:
| Q |
7 |
attctctccctgtctttcttacgtttcgtctcctccaaacaacctcacggagactgcttccaccaaatgctgcgacgctttctcgtcgacgttcttgccg |
106 |
Q |
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| T |
1131602 |
attctctccctgtctttcttacgtttcgtctcctccaaacaacctcacggagactgcttccaccaaatgctgcgacgctttctcgtcgacgttcttgccg |
1131503 |
T |
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| Q |
107 |
aactctctctgtttctgttatctcctccgtgataatcacattctcggcttccctctcaactccacaaggcttcaatcgctctcctcgctatgtgtctcgc |
206 |
Q |
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| T |
1131502 |
aactctctctgtttctgttatctcctccgtgataatcacattctcggcttccctctcaactccacaaggattcaatcgctttcctcgctatgtgtctcac |
1131403 |
T |
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| Q |
207 |
ctccaccaactacttcttctctcaatgttctttgcgcaggttcgttctttattctttcttttcaaagattctttagaatttagatacaaataatcaaata |
306 |
Q |
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| T |
1131402 |
ctccaccaactacttcttctctcaatgttctttgcgcaggttcgttctttattctttcttttcaaagattctttagaatttagatacaaataatcaaata |
1131303 |
T |
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| Q |
307 |
cagagagattaattgaattgttgttgtttgattcacattgttacagaatcacggactcttcctcctctcggcagcgcaga |
386 |
Q |
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| T |
1131302 |
cagagagattaattgaattgttgttgtttgattcacattgttacagaatcacggactcttcctcctctcggcagcgcaga |
1131223 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 313; Significance: 1e-176; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 313; E-Value: 1e-176
Query Start/End: Original strand, 7 - 386
Target Start/End: Original strand, 22970909 - 22971305
Alignment:
| Q |
7 |
attctctccctgtctttcttacgtttcgtctcctccaaacaacctcacggagactgcttccaccaaatgctgcgacgctttctcgtcgacgttcttgccg |
106 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||| |
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| T |
22970909 |
attctctccctgtctttcttacgtttcgtctcctccaaacaacctcacggagactgcttccaccaaatgctgcgacgctttctggtcgacgttcgtgccg |
22971008 |
T |
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| Q |
107 |
aactctctctgtttctgttatctcctccgtgataatcacattctcggcttccctctcaactccacaaggcttcaatcgctctcctcgctatgtgtctcgc |
206 |
Q |
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| T |
22971009 |
aactctctctgtttctgttatctcctccgtgataatcacattctcggcttccctctcaactccacaaggcttcaatcgctctcctcgctatgtgtctcac |
22971108 |
T |
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| Q |
207 |
ctccaccaactacttcttctctcaatgttctttgcgcaggttcgttctttattctttcttttcaaagattctttagaatttagatacaaataatcaaata |
306 |
Q |
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|||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
22971109 |
ctccaccaactacttcttctttcaatgttctttgcgcaggttcgttctttgttctttcttttcaaagattttttagaatttagatacaaataatcaaata |
22971208 |
T |
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| Q |
307 |
cagagagatt-----------------aattgaattgttgttgtttgattcacattgttacagaatcacggactcttcctcctctcggcagcgcaga |
386 |
Q |
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| T |
22971209 |
aagagagattaattgaattgaaattgaaattgaattgttgttgtttgattcacattgttacagaatcacggactcttcctcctctcggcagcgcaga |
22971305 |
T |
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