View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4974-Insertion-2 (Length: 980)

Name: NF4974-Insertion-2
Description: NF4974
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4974-Insertion-2
NF4974-Insertion-2
[»] chr7 (29 HSPs)
chr7 (197-852)||(45441108-45441762)
chr7 (22-185)||(45440517-45440674)
chr7 (523-643)||(36245371-36245491)
chr7 (525-643)||(28677314-28677432)
chr7 (526-643)||(11668013-11668130)
chr7 (569-641)||(8566122-8566194)
chr7 (521-640)||(6838411-6838530)
chr7 (536-643)||(29365629-29365736)
chr7 (569-643)||(30869227-30869301)
chr7 (570-643)||(10462410-10462483)
chr7 (570-643)||(34117981-34118054)
chr7 (537-643)||(39153296-39153402)
chr7 (526-643)||(13807275-13807388)
chr7 (521-643)||(9979794-9979915)
chr7 (524-646)||(41850626-41850748)
chr7 (570-641)||(2610222-2610293)
chr7 (570-643)||(45533263-45533336)
chr7 (533-643)||(48082832-48082941)
chr7 (542-643)||(2399966-2400067)
chr7 (539-608)||(2680869-2680938)
chr7 (530-643)||(7456421-7456534)
chr7 (527-643)||(24163302-24163418)
chr7 (533-643)||(2523775-2523885)
chr7 (569-643)||(44682599-44682673)
chr7 (570-643)||(10007618-10007691)
chr7 (147-178)||(43948970-43949001)
chr7 (569-643)||(4925924-4925998)
chr7 (569-646)||(27231875-27231951)
chr7 (141-178)||(48341083-48341120)
[»] chr4 (34 HSPs)
chr4 (519-641)||(30191931-30192053)
chr4 (527-643)||(48361085-48361201)
chr4 (524-645)||(48195921-48196042)
chr4 (533-643)||(25477550-25477660)
chr4 (526-643)||(44111743-44111860)
chr4 (526-624)||(17284733-17284831)
chr4 (525-643)||(36132632-36132750)
chr4 (534-641)||(44061394-44061501)
chr4 (541-639)||(35429786-35429884)
chr4 (539-646)||(42670794-42670901)
chr4 (586-647)||(41116591-41116652)
chr4 (525-643)||(50121470-50121588)
chr4 (526-643)||(16412267-16412384)
chr4 (534-643)||(3162928-3163037)
chr4 (583-643)||(9894658-9894718)
chr4 (569-641)||(45096609-45096681)
chr4 (541-641)||(21554122-21554221)
chr4 (569-643)||(2583123-2583197)
chr4 (524-643)||(8347678-8347797)
chr4 (542-641)||(9044401-9044500)
chr4 (569-643)||(42169084-42169158)
chr4 (569-643)||(53225685-53225759)
chr4 (542-640)||(32714283-32714381)
chr4 (542-643)||(4386169-4386270)
chr4 (537-606)||(19150793-19150862)
chr4 (583-643)||(55951717-55951777)
chr4 (541-641)||(45828428-45828528)
chr4 (527-646)||(47866066-47866184)
chr4 (147-180)||(6280234-6280267)
chr4 (583-640)||(14859741-14859798)
chr4 (569-646)||(20459282-20459358)
chr4 (569-646)||(20745373-20745449)
chr4 (525-643)||(47943760-47943878)
chr4 (524-561)||(48361048-48361085)
[»] chr1 (24 HSPs)
chr1 (526-643)||(38040274-38040391)
chr1 (527-647)||(519832-519952)
chr1 (533-647)||(49944862-49944976)
chr1 (539-647)||(38737942-38738050)
chr1 (524-643)||(34332509-34332628)
chr1 (539-641)||(15342972-15343074)
chr1 (525-643)||(26070857-26070975)
chr1 (533-641)||(44939071-44939179)
chr1 (520-643)||(26924246-26924369)
chr1 (569-646)||(38590107-38590184)
chr1 (570-643)||(50155340-50155413)
chr1 (569-641)||(23923585-23923657)
chr1 (536-641)||(11386190-11386294)
chr1 (534-647)||(27819317-27819431)
chr1 (569-641)||(6661549-6661621)
chr1 (520-606)||(26760165-26760251)
chr1 (581-643)||(7375522-7375584)
chr1 (535-617)||(47912824-47912904)
chr1 (570-643)||(640555-640627)
chr1 (537-638)||(8971266-8971367)
chr1 (574-647)||(37515136-37515209)
chr1 (522-634)||(37178952-37179064)
chr1 (526-559)||(5891724-5891757)
chr1 (569-646)||(34662712-34662788)
[»] chr5 (22 HSPs)
chr5 (526-641)||(33478142-33478257)
chr5 (533-643)||(5002145-5002255)
chr5 (537-643)||(18473508-18473614)
chr5 (534-643)||(34297180-34297289)
chr5 (541-643)||(36286072-36286174)
chr5 (525-641)||(22101943-22102059)
chr5 (532-641)||(16619053-16619162)
chr5 (534-640)||(919648-919754)
chr5 (524-641)||(29299392-29299510)
chr5 (570-647)||(36434720-36434797)
chr5 (525-617)||(21488280-21488372)
chr5 (533-643)||(11932003-11932113)
chr5 (570-622)||(1248883-1248935)
chr5 (570-642)||(39239829-39239901)
chr5 (534-617)||(13664952-13665035)
chr5 (569-643)||(32452269-32452343)
chr5 (586-646)||(14723416-14723476)
chr5 (569-617)||(18391539-18391587)
chr5 (526-643)||(38394461-38394578)
chr5 (589-647)||(18718267-18718325)
chr5 (145-178)||(1664454-1664487)
chr5 (570-647)||(38362408-38362485)
[»] chr2 (48 HSPs)
chr2 (537-643)||(32457222-32457328)
chr2 (527-641)||(38982998-38983112)
chr2 (533-643)||(10204959-10205069)
chr2 (533-643)||(7943444-7943554)
chr2 (533-646)||(11030197-11030310)
chr2 (527-643)||(30758719-30758834)
chr2 (526-641)||(29988927-29989042)
chr2 (525-643)||(9152376-9152494)
chr2 (534-643)||(4410783-4410892)
chr2 (527-643)||(12962738-12962854)
chr2 (527-643)||(30761411-30761527)
chr2 (539-642)||(35728475-35728579)
chr2 (569-643)||(41153152-41153226)
chr2 (533-643)||(28014306-28014416)
chr2 (533-623)||(28494757-28494847)
chr2 (574-643)||(39445028-39445097)
chr2 (570-646)||(20555288-20555364)
chr2 (542-643)||(33824383-33824484)
chr2 (526-643)||(43713972-43714088)
chr2 (542-643)||(12873756-12873857)
chr2 (537-646)||(38554467-38554576)
chr2 (525-643)||(33273967-33274085)
chr2 (569-641)||(3837451-3837523)
chr2 (569-641)||(39118049-39118121)
chr2 (526-646)||(45571060-45571179)
chr2 (526-646)||(45574727-45574846)
chr2 (526-646)||(45578394-45578513)
chr2 (526-646)||(45582061-45582180)
chr2 (526-646)||(45585728-45585847)
chr2 (526-646)||(45589395-45589514)
chr2 (526-646)||(45593062-45593181)
chr2 (526-646)||(45596729-45596848)
chr2 (526-646)||(45600396-45600515)
chr2 (526-646)||(45604063-45604182)
chr2 (526-646)||(45607730-45607849)
chr2 (526-646)||(45611397-45611516)
chr2 (526-646)||(45615064-45615183)
chr2 (569-603)||(5281219-5281253)
chr2 (571-641)||(34447546-34447616)
chr2 (147-180)||(1498878-1498911)
chr2 (539-641)||(2936328-2936430)
chr2 (147-180)||(11071330-11071363)
chr2 (569-646)||(11182206-11182283)
chr2 (541-643)||(28248946-28249048)
chr2 (147-180)||(28312009-28312042)
chr2 (570-643)||(29169878-29169950)
chr2 (536-614)||(32487052-32487130)
chr2 (141-178)||(41729445-41729482)
[»] chr8 (19 HSPs)
chr8 (524-640)||(8793755-8793871)
chr8 (524-647)||(5031493-5031616)
chr8 (533-647)||(16448794-16448908)
chr8 (525-643)||(42122963-42123081)
chr8 (526-641)||(35149666-35149781)
chr8 (523-646)||(8803258-8803381)
chr8 (533-628)||(40483288-40483383)
chr8 (527-643)||(3236363-3236479)
chr8 (524-643)||(7693029-7693148)
chr8 (534-641)||(8453601-8453707)
chr8 (570-643)||(1223156-1223229)
chr8 (534-643)||(10839796-10839904)
chr8 (527-643)||(43332593-43332710)
chr8 (533-640)||(24618963-24619070)
chr8 (583-626)||(30255783-30255826)
chr8 (569-643)||(34711114-34711188)
chr8 (570-643)||(10184593-10184666)
chr8 (574-643)||(16008569-16008638)
chr8 (571-639)||(36191790-36191856)
[»] chr6 (15 HSPs)
chr6 (521-617)||(9077645-9077741)
chr6 (536-641)||(30627858-30627963)
chr6 (526-642)||(3064917-3065033)
chr6 (525-641)||(17265718-17265834)
chr6 (569-643)||(2972197-2972271)
chr6 (525-647)||(12450380-12450502)
chr6 (538-643)||(28630786-28630891)
chr6 (569-643)||(2230390-2230464)
chr6 (527-643)||(27909007-27909124)
chr6 (524-617)||(28863379-28863472)
chr6 (527-643)||(33119903-33120017)
chr6 (569-641)||(12999796-12999868)
chr6 (521-606)||(30895254-30895339)
chr6 (542-646)||(10283308-10283412)
chr6 (141-178)||(1316738-1316775)
[»] chr3 (24 HSPs)
chr3 (527-643)||(54537476-54537592)
chr3 (527-647)||(52864980-52865100)
chr3 (538-643)||(44518069-44518174)
chr3 (525-647)||(8266262-8266382)
chr3 (526-641)||(43448993-43449108)
chr3 (527-643)||(21662919-21663035)
chr3 (570-641)||(25954064-25954135)
chr3 (583-641)||(23223013-23223071)
chr3 (524-646)||(45010746-45010868)
chr3 (574-643)||(53357334-53357404)
chr3 (541-611)||(9197094-9197164)
chr3 (569-646)||(9236117-9236194)
chr3 (569-641)||(12747738-12747810)
chr3 (571-643)||(32711245-32711317)
chr3 (146-180)||(24783933-24783967)
chr3 (527-561)||(34988171-34988205)
chr3 (569-643)||(48593175-48593249)
chr3 (147-180)||(24574292-24574325)
chr3 (569-646)||(29457881-29457957)
chr3 (574-615)||(35099101-35099142)
chr3 (543-617)||(36985215-36985289)
chr3 (543-617)||(37010654-37010728)
chr3 (574-646)||(40460375-40460448)
chr3 (525-587)||(50354325-50354387)
[»] scaffold0236 (1 HSPs)
scaffold0236 (569-639)||(16692-16762)
[»] scaffold0123 (1 HSPs)
scaffold0123 (569-624)||(28130-28185)
[»] scaffold0136 (1 HSPs)
scaffold0136 (569-647)||(16558-16636)
[»] scaffold0086 (1 HSPs)
scaffold0086 (576-626)||(1487-1537)
[»] scaffold0110 (1 HSPs)
scaffold0110 (533-646)||(1538-1650)
[»] scaffold0238 (1 HSPs)
scaffold0238 (571-641)||(2539-2609)


Alignment Details
Target: chr7 (Bit Score: 495; Significance: 0; HSPs: 29)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 495; E-Value: 0
Query Start/End: Original strand, 197 - 852
Target Start/End: Original strand, 45441108 - 45441762
Alignment:
Q  197 tcaaatctgttttgttaaacaaaatacatcgtcttcnnnnnnngactttcttatttgtttatatttgaggttggaaagttagaatgtttgttgtaaaatt 296  Q
    |||||||||||||||||||||||||||||||||||        ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  45441108 tcaaatctgttttgttaaacaaaatacatcgtctt---tttttgactttcttatttgtttatatttgaggttggaaagttagaatgtttgttataaaatt 45441204  T
Q  297 aaaaggagtattaaaaacactcttcttaatactcattcttttatttaataaaattattgtgaatctcgtagtttagaaatagatcgcacataaaataatg 396  Q
    ||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  45441205 aaaaggagtattaaaaacactcttcttaacactcattcttttatttgataaaattattgtgaatctcgtagtttagaaatagatcgcacataaaataatg 45441304  T
Q  397 gacttatatcgactttatcctatnnnnnnntaagtgttagaaagagctttgtatcagttgtgggtttgatgtggattaaataatggtgacatgatttgtt 496  Q
    ||||||||| |||||||||||||       ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  45441305 gacttatattgactttatcctataaaaaaataagtgttagaaagagctttgtatcagttgtgggtttgatgtggattaaataatggtgacatgatttgtt 45441404  T
Q  497 aatatgttaacatgaccaaagagtaattaatactcgctccggtcctatttataagaaatatttgannnnnnngattcattgcatagatgatgtatttgat 596  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||       |||| |||| ||||||||||||||||||    
T  45441405 aatatgttaacatgaccaaagagtaattaatactcgctccggtcctatttatatgaaatatttgacttttttgatttattgtatagatgatgtatttgat 45441504  T
Q  597 ctatattctagacaagatacaccaattactcattgaatctaaaaagttaaannnnnnnnataaaaacaaatatgcattgcaatcctttaagatatatgtt 696  Q
    |||||||||||||||||||||||||||| |||||||||||||||||||||         |||||||||||||||||||||||||||||||||||||||||    
T  45441505 ctatattctagacaagatacaccaattattcattgaatctaaaaagttaatttttttttataaaaacaaatatgcattgcaatcctttaagatatatgtt 45441604  T
Q  697 tgtacgggataaaacatttag--nnnnnnnctttctttctacaagttgtagtttaacttataaaaatgcaaaaattgttatagttaaacgttgtgattat 794  Q
    |||||||||||||||||||||         ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  45441605 tgtacgggataaaacatttagtttttctttctttctttctacaagttgtagtttaacttataaaaatgcaaaaattgttatagttaaacgttgtgattat 45441704  T
Q  795 gattcaaacttcgactcattcatctatgtgtgtggatttttaataatttgtcattatg 852  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  45441705 gattcaaacttcgactcattcatctatgtgtgtggatttttaataatttgtcattatg 45441762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 93; E-Value: 8e-45
Query Start/End: Original strand, 22 - 185
Target Start/End: Original strand, 45440517 - 45440674
Alignment:
Q  22 aactytcccgtctacaatttcacccttttgtgggtgtgagtgaataccttctcattcagcgattcccgtatttatgtgtttgtactgtataggctttcan 121  Q
    |||| ||||||||||||||||||||||||||||||||||    ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||     
T  45440517 aactctcccgtctacaatttcacccttttgtgggtgtga----ataccttctgattcagcgattcccgtatttatgtgtttgtactgtataggctttcat 45440612  T
Q  122 nnnnnnncttcttccattccatagagtgtatttgtttcaagtttaccaaatttattcattgtaa 185  Q
            ||||||||||||||||||||| |||||||| |||||||||||||||||||| ||||    
T  45440613 ttttttt-ttcttccattccatagagtgtgtttgtttc-agtttaccaaatttattcatagtaa 45440674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 72; E-Value: 3e-32
Query Start/End: Original strand, 523 - 643
Target Start/End: Original strand, 36245371 - 36245491
Alignment:
Q  523 ttaatactcgctccggtcctatttataagaaatatttgannnnnnngattcattgcatagatgatgtatttgatctatattctagacaagatacaccaat 622  Q
    ||||||||| |||||||||| ||||||||||| ||||||       ||||||||||||| |||||||||||| |||||||||||||||||||||| ||||    
T  36245371 ttaatactccctccggtcctgtttataagaaacatttgacttttttgattcattgcataaatgatgtatttggtctatattctagacaagatacatcaat 36245470  T
Q  623 tactcattgaatctaaaaagt 643  Q
    |||||| ||||||||||||||    
T  36245471 tactcaatgaatctaaaaagt 36245491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 70; E-Value: 4e-31
Query Start/End: Original strand, 525 - 643
Target Start/End: Original strand, 28677314 - 28677432
Alignment:
Q  525 aatactcgctccggtcctatttataagaaatatttgannnnnnngattcattgcatagatgatgtatttgatctatattctagacaagatacaccaatta 624  Q
    ||||||| |||||||||||||||||||||| ||||||       ||||||||||||| |||||||||||| |||||||||||||||||||||| ||||||    
T  28677314 aatactccctccggtcctatttataagaaacatttgacttttttgattcattgcataaatgatgtatttggtctatattctagacaagatacatcaatta 28677413  T
Q  625 ctcattgaatctaaaaagt 643  Q
    |||| | ||||||||||||    
T  28677414 ctcaataaatctaaaaagt 28677432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 65; E-Value: 4e-28
Query Start/End: Original strand, 526 - 643
Target Start/End: Original strand, 11668013 - 11668130
Alignment:
Q  526 atactcgctccggtcctatttataagaaatatttgannnnnnngattcattgcatagatgatgtatttgatctatattctagacaagatacaccaattac 625  Q
    |||||| |||||||||||||||||||||| ||||||       ||||||||||||| ||||| ||||||||||||||||||||||||||||| ||||||     
T  11668013 atactccctccggtcctatttataagaaacatttgacttttttgattcattgcataaatgatatatttgatctatattctagacaagatacatcaattaa 11668112  T
Q  626 tcattgaatctaaaaagt 643  Q
    ||| ||||| ||||||||    
T  11668113 tcaatgaatgtaaaaagt 11668130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 57; E-Value: 3e-23
Query Start/End: Original strand, 569 - 641
Target Start/End: Original strand, 8566122 - 8566194
Alignment:
Q  569 gattcattgcatagatgatgtatttgatctatattctagacaagatacaccaattactcattgaatctaaaaa 641  Q
    ||||||||||||| |||||||||||| |||||||||||||||||||||| |||||||||| ||||||||||||    
T  8566122 gattcattgcataaatgatgtatttggtctatattctagacaagatacatcaattactcaatgaatctaaaaa 8566194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 55; E-Value: 4e-22
Query Start/End: Original strand, 521 - 640
Target Start/End: Complemental strand, 6838530 - 6838411
Alignment:
Q  521 aattaatactcgctccggtcctatttataagaaatatttgannnnnnngattcattgcatagatgatgtatttgatctatattctagacaagatacacca 620  Q
    |||||||||||  |||| || ||||||||||||| ||||||       ||||||||||||| |||||||||||| ||||||||||||||||||||||  |    
T  6838530 aattaatactcattccgatcttatttataagaaacatttgacttttttgattcattgcataaatgatgtatttggtctatattctagacaagatacatta 6838431  T
Q  621 attactcattgaatctaaaa 640  Q
    |||||||| |||||| ||||    
T  6838430 attactcaatgaatcaaaaa 6838411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 536 - 643
Target Start/End: Original strand, 29365629 - 29365736
Alignment:
Q  536 cggtcctatttataagaaatatttgannnnnnngattcattgcatagatgatgtatttgatctatattctagacaagatacaccaattactcattgaatc 635  Q
    ||||||||||||||||||| ||||||        || ||||||||| |||||||||||||||||||||||| || | |||||  ||||||||| ||||||    
T  29365629 cggtcctatttataagaaacatttgacttttttaatacattgcataaatgatgtatttgatctatattctataccaaatacattaattactcaatgaatc 29365728  T
Q  636 taaaaagt 643  Q
    ||||||||    
T  29365729 taaaaagt 29365736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 569 - 643
Target Start/End: Original strand, 30869227 - 30869301
Alignment:
Q  569 gattcattgcatagatgatgtatttgatctatattctagacaagatacaccaattactcattgaatctaaaaagt 643  Q
    |||| |||| ||| || ||||||||| |||||||||||||||||||||| |||||||||| ||||||||||||||    
T  30869227 gatttattgtataaataatgtatttggtctatattctagacaagatacatcaattactcaatgaatctaaaaagt 30869301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 46; E-Value: 9e-17
Query Start/End: Original strand, 570 - 643
Target Start/End: Complemental strand, 10462483 - 10462410
Alignment:
Q  570 attcattgcatagatgatgtatttgatctatattctagacaagatacaccaattactcattgaatctaaaaagt 643  Q
    |||||||||||| |||||||||||| | |||||| ||||||||||||| |||| ||||| ||||||||||||||    
T  10462483 attcattgcataaatgatgtatttggtatatattttagacaagatacatcaatcactcaatgaatctaaaaagt 10462410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 46; E-Value: 9e-17
Query Start/End: Original strand, 570 - 643
Target Start/End: Original strand, 34117981 - 34118054
Alignment:
Q  570 attcattgcatagatgatgtatttgatctatattctagacaagatacaccaattactcattgaatctaaaaagt 643  Q
    |||||||||||| |||||||||||| ||||||||||||||||||||||  |||||| || ||||| ||||||||    
T  34117981 attcattgcataaatgatgtatttggtctatattctagacaagatacattaattacacaatgaatttaaaaagt 34118054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 46; E-Value: 9e-17
Query Start/End: Original strand, 537 - 643
Target Start/End: Original strand, 39153296 - 39153402
Alignment:
Q  537 ggtcctatttataagaaatatttgannnnnnngattcattgcatagatgatgtatttgatctatattctagacaagatacaccaattactcattgaatct 636  Q
    |||||||||||||||||| ||||||       ||||||||||||| |||||||||||  |||||||| ||||| | ||||| |||||||||| |||| ||    
T  39153296 ggtcctatttataagaaacatttgacttttttgattcattgcataaatgatgtatttagtctatattatagaccaaatacatcaattactcaatgaagct 39153395  T
Q  637 aaaaagt 643  Q
    |||||||    
T  39153396 aaaaagt 39153402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 526 - 643
Target Start/End: Complemental strand, 13807388 - 13807275
Alignment:
Q  526 atactcgctccggtcctatttataagaaatatttgannnnnnngattcattgcatagatgatgtatttgatctatattctagacaagatacaccaattac 625  Q
    |||||| ||||||| |||||||||||||| ||||||       |||||||| |||| ||||| |||||||||||||||||| | |||||    |||||||    
T  13807388 atactccctccggttctatttataagaaacatttgacttttttgattcattacataaatgatatatttgatctatattctaaagaagat----caattac 13807293  T
Q  626 tcattgaatctaaaaagt 643  Q
    ||| ||||||||||||||    
T  13807292 tcaatgaatctaaaaagt 13807275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 521 - 643
Target Start/End: Original strand, 9979794 - 9979915
Alignment:
Q  521 aattaatactcgctccggtcctatttataagaaatatttgannnnnnngattcattgcatagatgatgtatttgatctatattctagacaagatacacca 620  Q
    ||||||||||  ||||| || ||||||||||||||||||||       |||| ||| |||| |||||||||||  || |||||||||||||||||||  |    
T  9979794 aattaatacttcctccgatcttatttataagaaatatttgactattttgatttatt-cataaatgatgtatttagtcaatattctagacaagatacatga 9979892  T
Q  621 attactcattgaatctaaaaagt 643  Q
    |||||||| | ||||||||||||    
T  9979893 attactcaataaatctaaaaagt 9979915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 524 - 646
Target Start/End: Complemental strand, 41850748 - 41850626
Alignment:
Q  524 taatactcgctccggtcctatttataagaaatatttgannnnnnngattcattgcatagatgatgtatttgatctatattctagacaagatacaccaatt 623  Q
    ||||||||  ||||||||||||||||||||| |||| |       ||||||||||||| |||||||||||| |||||||| || || | |||||  ||||    
T  41850748 taatactccatccggtcctatttataagaaacattttacttttttgattcattgcataaatgatgtatttgctctatattttataccaaatacattaatt 41850649  T
Q  624 actcattgaatctaaaaagttaa 646  Q
    | ||| |||||||||||| ||||    
T  41850648 attcaatgaatctaaaaaattaa 41850626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 570 - 641
Target Start/End: Complemental strand, 2610293 - 2610222
Alignment:
Q  570 attcattgcatagatgatgtatttgatctatattctagacaagatacaccaattactcattgaatctaaaaa 641  Q
    |||||||||||| |||||||||||  |||||||||||||| | ||||| |||||||||| ||||| ||||||    
T  2610293 attcattgcataaatgatgtatttagtctatattctagaccaaatacatcaattactcaatgaatttaaaaa 2610222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 570 - 643
Target Start/End: Complemental strand, 45533336 - 45533263
Alignment:
Q  570 attcattgcatagatgatgtatttgatctatattctagacaagatacaccaattactcattgaatctaaaaagt 643  Q
    |||||||| ||| || ||||||||| ||||||||||||||||||||||  ||||||  | ||||||||||||||    
T  45533336 attcattgtataaataatgtatttggtctatattctagacaagatacattaattacataatgaatctaaaaagt 45533263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 533 - 643
Target Start/End: Complemental strand, 48082941 - 48082832
Alignment:
Q  533 ctccggtcctatttataagaaatatttgannnnnnngattcattgcatagatgatgtatttgatctatattctagacaagatacaccaattactcattga 632  Q
    |||||||||||||||||| ||||||||||        ||||||| |||| ||| |||||||| ||||||||||| ||| ||||||  |||||| || |||    
T  48082941 ctccggtcctatttataataaatatttgactttttttattcattacataaatggtgtatttg-tctatattctacacatgatacattaattacacaatga 48082843  T
Q  633 atctaaaaagt 643  Q
    |||||||||||    
T  48082842 atctaaaaagt 48082832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 542 - 643
Target Start/End: Original strand, 2399966 - 2400067
Alignment:
Q  542 tatttataagaaatatttgannnnnnngattcattgcatagatgatgtatttgatctatattctagacaagatacaccaattactcattgaatctaaaaa 641  Q
    ||||||||||||| ||||||       ||||||||| ||| ||||||||||| ||||||||| ||||| ||||||| |||||| |||  ||| |||||||    
T  2399966 tatttataagaaacatttgacttttttgattcattgtataaatgatgtatttaatctatattttagactagatacatcaattattcaacgaacctaaaaa 2400065  T
Q  642 gt 643  Q
    ||    
T  2400066 gt 2400067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 539 - 608
Target Start/End: Original strand, 2680869 - 2680938
Alignment:
Q  539 tcctatttataagaaatatttgannnnnnngattcattgcatagatgatgtatttgatctatattctaga 608  Q
    |||||||||||||||||||||||       ||||||||  ||| ||||||||||||||||||||||||||    
T  2680869 tcctatttataagaaatatttgacttttttgattcattatataaatgatgtatttgatctatattctaga 2680938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 530 - 643
Target Start/End: Original strand, 7456421 - 7456534
Alignment:
Q  530 tcgctccggtcctatttataagaaatatttgannnnnnngattcattgcatagatgatgtatttgatctatattctagacaagatacaccaattactcat 629  Q
    |||||||||||||  |||||||||||||||||       ||||||||| ||| ||||||||| |  ||||||||    ||||||||||  |||||||||     
T  7456421 tcgctccggtccttattataagaaatatttgactttttagattcattgtataaatgatgtatctagtctatatttacaacaagatacattaattactcaa 7456520  T
Q  630 tgaatctaaaaagt 643  Q
    ||||||||||||||    
T  7456521 tgaatctaaaaagt 7456534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 527 - 643
Target Start/End: Complemental strand, 24163418 - 24163302
Alignment:
Q  527 tactcgctccggtcctatttataagaaatatttgannnnnnngattcattgcatagatgatgtatttgatctatattctagacaagatacaccaattact 626  Q
    ||||| |||||| ||||||||||||||| |||| |        |||||||||||| ||||||||| || |||||||||||  |||||||||  |||||      
T  24163418 tactctctccggacctatttataagaaacatttcacttttttaattcattgcataaatgatgtatatggtctatattctacgcaagatacattaattata 24163319  T
Q  627 cattgaatctaaaaagt 643  Q
    || ||||||||||||||    
T  24163318 caatgaatctaaaaagt 24163302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 533 - 643
Target Start/End: Original strand, 2523775 - 2523885
Alignment:
Q  533 ctccggtcctatttataagaaatatttgannnnnnngattcattgcatagatgatgtatttgatctatattcta-gacaagatacaccaattactcattg 631  Q
    |||||||| ||||||||||||| ||||||       ||||||||||||| | ||||||| || ||||||||||| | |||| ||||  ||||||||| ||    
T  2523775 ctccggtcttatttataagaaacatttgacttttttgattcattgcataaacgatgtatctggtctatattctatgccaag-tacattaattactcaatg 2523873  T
Q  632 aatctaaaaagt 643  Q
    ||||||||||||    
T  2523874 aatctaaaaagt 2523885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 569 - 643
Target Start/End: Complemental strand, 44682673 - 44682599
Alignment:
Q  569 gattcattgcatagatgatgtatttgatctatattctagacaagatacaccaattactcattgaatctaaaaagt 643  Q
    ||||||||||||| ||||| |||||| |||||| ||||||||| ||||| || ||||| | ||||||| ||||||    
T  44682673 gattcattgcataaatgatatatttggtctataatctagacaaaatacatcagttacttaatgaatctcaaaagt 44682599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 570 - 643
Target Start/End: Original strand, 10007618 - 10007691
Alignment:
Q  570 attcattgcatagatgatgtatttgatctatattctagacaagatacaccaattactcattgaatctaaaaagt 643  Q
    ||||||| |||| || ||||||||| ||||||||||| ||||||||||  |||||  || ||||||||||||||    
T  10007618 attcatttcataaattatgtatttggtctatattctacacaagatacattaattatacaatgaatctaaaaagt 10007691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 147 - 178
Target Start/End: Original strand, 43948970 - 43949001
Alignment:
Q  147 gtgtatttgtttcaagtttaccaaatttattc 178  Q
    ||||||||||||||||||||||||||||||||    
T  43948970 gtgtatttgtttcaagtttaccaaatttattc 43949001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 569 - 643
Target Start/End: Complemental strand, 4925998 - 4925924
Alignment:
Q  569 gattcattgcatagatgatgtatttgatctatattctagacaagatacaccaattactcattgaatctaaaaagt 643  Q
    |||| |||||| | ||||| |||||  |||||||| |||||||| |||| |||||||| | ||||||||||||||    
T  4925998 gatttattgcacaaatgatatatttagtctatattttagacaagttacatcaattacttaatgaatctaaaaagt 4925924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 569 - 646
Target Start/End: Original strand, 27231875 - 27231951
Alignment:
Q  569 gattcattgcatagatgatgtatttgatctatattctagacaagatacaccaattactcattgaatctaaaaagttaa 646  Q
    ||||||||| |||| ||||||||||| ||||| |||||| | || |||| |||||| | | |||||||||||||||||    
T  27231875 gattcattgaatagttgatgtatttggtctat-ttctaggctaggtacatcaattattgaatgaatctaaaaagttaa 27231951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #29
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 141 - 178
Target Start/End: Original strand, 48341083 - 48341120
Alignment:
Q  141 catagagtgtatttgtttcaagtttaccaaatttattc 178  Q
    ||||| |||| |||||||||||||||||||||||||||    
T  48341083 catagggtgtgtttgtttcaagtttaccaaatttattc 48341120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 66; Significance: 1e-28; HSPs: 34)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 66; E-Value: 1e-28
Query Start/End: Original strand, 519 - 641
Target Start/End: Complemental strand, 30192053 - 30191931
Alignment:
Q  519 gtaattaatactcgctccggtcctatttataagaaatatttgannnnnnngattcattgcatagatgatgtatttgatctatattctagacaagatacac 618  Q
    ||||||||||||| |||||||| ||||||||||||| |||| |       ||||||||||||| |||||||||||| |||||||||||||||| |||||     
T  30192053 gtaattaatactccctccggtcgtatttataagaaacatttaacttttttgattcattgcataaatgatgtatttggtctatattctagacaaaatacat 30191954  T
Q  619 caattactcattgaatctaaaaa 641  Q
    |||||||||| ||||||||||||    
T  30191953 caattactcaatgaatctaaaaa 30191931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 64; E-Value: 2e-27
Query Start/End: Original strand, 527 - 643
Target Start/End: Complemental strand, 48361201 - 48361085
Alignment:
Q  527 tactcgctccggtcctatttataagaaatatttgannnnnnngattcattgcatagatgatgtatttgatctatattctagacaagatacaccaattact 626  Q
    ||||| |||| ||||||||||||||||| ||||||       ||||||||||||| |||||||||||| |||||||||||||||| ||||| ||||||||    
T  48361201 tactccctcctgtcctatttataagaaacatttgacttttttgattcattgcataaatgatgtatttggtctatattctagacaaaatacatcaattact 48361102  T
Q  627 cattgaatctaaaaagt 643  Q
    || ||||||||||||||    
T  48361101 caatgaatctaaaaagt 48361085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 61; E-Value: 1e-25
Query Start/End: Original strand, 524 - 645
Target Start/End: Complemental strand, 48196042 - 48195921
Alignment:
Q  524 taatactcgctccggtcctatttataagaaatatttgannnnnnngattcattgcatagatgatgtatttgatctatattctagacaagatacaccaatt 623  Q
    |||||||  |||||||||||||||||||||| ||||||       | ||||||||||| |||||||||||| |||||||||||||||||||||  |||||    
T  48196042 taatacttcctccggtcctatttataagaaacatttgacttttttggttcattgcataaatgatgtatttggtctatattctagacaagatacgtcaatt 48195943  T
Q  624 actcattgaatctaaaaagtta 645  Q
    ||||| ||||| ||||||||||    
T  48195942 actcaatgaatttaaaaagtta 48195921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 58; E-Value: 6e-24
Query Start/End: Original strand, 533 - 643
Target Start/End: Original strand, 25477550 - 25477660
Alignment:
Q  533 ctccggtcctatttataagaaatatttgannnnnnngattcattgcatagatgatgtatttgatctatattctagacaagatacaccaattactcattga 632  Q
    |||| ||||||||||||| ||||||||||       ||||||||||||| |||||||||||||||||||||||| |||| ||||| |||||||||| |||    
T  25477550 ctccagtcctatttataaaaaatatttgacttttttgattcattgcataaatgatgtatttgatctatattctacacaaaatacatcaattactcaatga 25477649  T
Q  633 atctaaaaagt 643  Q
    || ||||||||    
T  25477650 atttaaaaagt 25477660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 57; E-Value: 3e-23
Query Start/End: Original strand, 526 - 643
Target Start/End: Original strand, 44111743 - 44111860
Alignment:
Q  526 atactcgctccggtcctatttataagaaatatttgannnnnnngattcattgcatagatgatgtatttgatctatattctagacaagatacaccaattac 625  Q
    |||||| |||||||||||||||||||||| ||||||       |||| ||| |||| |||||||||||| ||||||||||| | |||||||| |||||||    
T  44111743 atactccctccggtcctatttataagaaacatttgacttttttgattaattacataaatgatgtatttggtctatattctaaagaagatacatcaattac 44111842  T
Q  626 tcattgaatctaaaaagt 643  Q
    ||| ||||||||||||||    
T  44111843 tcaatgaatctaaaaagt 44111860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 50; E-Value: 4e-19
Query Start/End: Original strand, 526 - 624
Target Start/End: Original strand, 17284733 - 17284831
Alignment:
Q  526 atactcgctccggtcctatttataagaaatatttgannnnnnngattcattgcatagatgatgtatttgatctatattctagacaagatacaccaatta 624  Q
    |||||| ||||||||||||||||||  |||||||||       ||||||||||||| ||||||||| || |||||||||||||||||||||| ||||||    
T  17284733 atactccctccggtcctatttataatgaatatttgatttttttgattcattgcataaatgatgtatgtggtctatattctagacaagatacatcaatta 17284831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 50; E-Value: 4e-19
Query Start/End: Original strand, 525 - 643
Target Start/End: Original strand, 36132632 - 36132750
Alignment:
Q  525 aatactcgctccggtcctatttataagaaatatttgannnnnnngattcattgcatagatgatgtatttgatctatattctagacaagatacaccaatta 624  Q
    ||||||| |||| ||||||||||||||||||||||||       ||||||||| ||| |||||||||||  ||||||||| |||||||||||| ||| ||    
T  36132632 aatactccctccagtcctatttataagaaatatttgacttttttgattcattgtataaatgatgtatttagtctatattcaagacaagatacatcaacta 36132731  T
Q  625 ctcattgaatctaaaaagt 643  Q
    |||| || |||| ||||||    
T  36132732 ctcaatgtatcttaaaagt 36132750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 534 - 641
Target Start/End: Original strand, 44061394 - 44061501
Alignment:
Q  534 tccggtcctatttataagaaatatttgannnnnnngattcattgcatagatgatgtatttgatctatattctagacaagatacaccaattactcattgaa 633  Q
    ||||||| |||||||||||||  |||||       ||||||||||||| || ||||||||| ||||||||||||||||||||||| |||||| || ||||    
T  44061394 tccggtcatatttataagaaacgtttgagttttttgattcattgcataaataatgtatttggtctatattctagacaagatacactaattacacaatgaa 44061493  T
Q  634 tctaaaaa 641  Q
    | ||||||    
T  44061494 tttaaaaa 44061501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 46; E-Value: 9e-17
Query Start/End: Original strand, 541 - 639
Target Start/End: Original strand, 35429786 - 35429884
Alignment:
Q  541 ctatttataagaaatatttgannnnnnngattcattgcatagatgatgtatttgatctatattctagacaagatacaccaattactcattgaatctaaa 639  Q
    |||||||||||||||||||||        |||| ||||||| | |||||||||| |||||||||||||||||||||| |||||||||| | ||||||||    
T  35429786 ctatttataagaaatatttgactttttttattcgttgcataaaagatgtatttggtctatattctagacaagatacatcaattactcaattaatctaaa 35429884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 43; E-Value: 0.000000000000006
Query Start/End: Original strand, 539 - 646
Target Start/End: Complemental strand, 42670901 - 42670794
Alignment:
Q  539 tcctatttataagaaatatttgannnnnnngattcattgcatagatgatgtatttgatctatattctagacaagatacaccaattactcattgaatctaa 638  Q
    |||||||||||||||| ||||||       ||||||||||||| ||||| |||||| ||||||||||| || |||||||  |||||| || |||||| ||    
T  42670901 tcctatttataagaaacatttgactttttagattcattgcataaatgatatatttggtctatattctaaacgagatacattaattacacaatgaatcaaa 42670802  T
Q  639 aaagttaa 646  Q
    ||||||||    
T  42670801 aaagttaa 42670794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 586 - 647
Target Start/End: Complemental strand, 41116652 - 41116591
Alignment:
Q  586 atgtatttgatctatattctagacaagatacaccaattactcattgaatctaaaaagttaaa 647  Q
    ||||||||| |||||||| |||| |||||||| |||||||||| ||||||||||||||||||    
T  41116652 atgtatttggtctatattttagataagatacatcaattactcaatgaatctaaaaagttaaa 41116591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 525 - 643
Target Start/End: Complemental strand, 50121588 - 50121470
Alignment:
Q  525 aatactcgctccggtcctatttataagaaatatttgannnnnnngattcattgcatagatgatgtatttgatctatattctagacaagatacaccaatta 624  Q
    ||||||| |||  ||||||||||||||||| ||||||        |||||||||||| ||||| |||||| ||||||| |||||||||||||| |||| |    
T  50121588 aatactccctctagtcctatttataagaaacatttgacttttttaattcattgcataaatgatatatttggtctatatactagacaagatacatcaatca 50121489  T
Q  625 ctcattgaatctaaaaagt 643  Q
     ||| | ||||||||||||    
T  50121488 ttcaataaatctaaaaagt 50121470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 41; E-Value: 0.00000000000009
Query Start/End: Original strand, 526 - 643
Target Start/End: Complemental strand, 16412384 - 16412267
Alignment:
Q  526 atactcgctccggtcctatttataagaaatatttgannnnnnngattcattgcatagatgatgtatttgatctatattctagacaagatacaccaattac 625  Q
    |||||| ||||||| |||| ||||||||||||||||       ||  ||||||||| || ||||||||| |||||||||||||| | ||| | ||||||     
T  16412384 atactccctccggttctatatataagaaatatttgacttctttgacacattgcataaataatgtatttggtctatattctagaccaaatatatcaattat 16412285  T
Q  626 tcattgaatctaaaaagt 643  Q
    ||| ||||||||||||||    
T  16412284 tcaatgaatctaaaaagt 16412267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 534 - 643
Target Start/End: Complemental strand, 3163037 - 3162928
Alignment:
Q  534 tccggtcctatttataagaaatatttgannnnnnngattcattgcatagatgatgtatttgatctatattctagacaagatacaccaattactcattgaa 633  Q
    ||||||| ||||||||| ||| ||||||       ||||||||||||| ||||||||||   |||||||||||||||||||| |  |||||| || ||||    
T  3163037 tccggtcttatttataaaaaacatttgacttttttgattcattgcataaatgatgtattgagtctatattctagacaagatatattaattacacaatgaa 3162938  T
Q  634 tctaaaaagt 643  Q
    | ||||||||    
T  3162937 tttaaaaagt 3162928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 583 - 643
Target Start/End: Complemental strand, 9894718 - 9894658
Alignment:
Q  583 atgatgtatttgatctatattctagacaagatacaccaattactcattgaatctaaaaagt 643  Q
    |||||||||||||||||||||||||||||||||||  ||| ||  | ||||||||||||||    
T  9894718 atgatgtatttgatctatattctagacaagatacattaataacataatgaatctaaaaagt 9894658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 569 - 641
Target Start/End: Complemental strand, 45096681 - 45096609
Alignment:
Q  569 gattcattgcatagatgatgtatttgatctatattctagacaagatacaccaattactcattgaatctaaaaa 641  Q
    |||| |||||||| ||||| |||||| |||||| ||||||||||||||| |||||| ||| | ||||||||||    
T  45096681 gatttattgcataaatgatatatttggtctataatctagacaagatacatcaattattcaataaatctaaaaa 45096609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 541 - 641
Target Start/End: Original strand, 21554122 - 21554221
Alignment:
Q  541 ctatttataagaaatatttgannnnnnngattcattgcatagatgatgtatttgatctatattctagacaagatacaccaattactcattgaatctaaaa 640  Q
    |||||||||| ||||||||||       ||||||||||||| |||||||||||| ||||||||||| |  | |||||  ||||||||| |||||||||||    
T  21554122 ctatttataaaaaatatttgactttttcgattcattgcataaatgatgtatttggtctatattctatatca-atacattaattactcaatgaatctaaaa 21554220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 569 - 643
Target Start/End: Original strand, 2583123 - 2583197
Alignment:
Q  569 gattcattgcatagatgatgtatttgatctatattctagacaagatacaccaattactcattgaatctaaaaagt 643  Q
    ||||||||||||| ||||| |||||| |||||||| ||||||| ||| |  |||||| || ||||||||||||||    
T  2583123 gattcattgcataaatgatatatttggtctatattatagacaaaatataataattacacaatgaatctaaaaagt 2583197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 524 - 643
Target Start/End: Complemental strand, 8347797 - 8347678
Alignment:
Q  524 taatactcgctccggtcctatttataagaaatatttgannnnnnngattcattgcatagatgatgtatttgatctatattctagacaagatacaccaatt 623  Q
    |||||||  ||||||||  |||||||||||| ||||||        |||||||| ||| |||||||||| | |||||||| || |||| ||||| ||||     
T  8347797 taatacttcctccggtctaatttataagaaacatttgactttttttattcattgtataaatgatgtattcggtctatattttatacaaaatacatcaatc 8347698  T
Q  624 actcattgaatctaaaaagt 643  Q
    ||||| ||||||||||||||    
T  8347697 actcaatgaatctaaaaagt 8347678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 542 - 641
Target Start/End: Original strand, 9044401 - 9044500
Alignment:
Q  542 tatttataagaaatatttgannnnnnngattcattgcatagatgatgtatttgatctatattctagacaagatacaccaattactcattgaatctaaaaa 641  Q
    |||| |||||||||||||||       ||||||||| ||| ||||||| ||||  ||||||||||||||| ||||| |||||||||| | |||| |||||    
T  9044401 tattcataagaaatatttgacttttttgattcattgtataaatgatgtctttggcctatattctagacaaaatacatcaattactcaataaatccaaaaa 9044500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 569 - 643
Target Start/End: Original strand, 42169084 - 42169158
Alignment:
Q  569 gattcattgcatagatgatgtatttgatctatattctagacaagatacaccaattactcattgaatctaaaaagt 643  Q
    |||||||| |||| |||||||||||| || |||||| |||||| ||||| |||||| ||| | ||||||||||||    
T  42169084 gattcattacataaatgatgtatttggtccatattcaagacaaaatacatcaattattcaataaatctaaaaagt 42169158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 569 - 643
Target Start/End: Original strand, 53225685 - 53225759
Alignment:
Q  569 gattcattgcatagatgatgtatttgatctatattctagacaagatacaccaattactcattgaatctaaaaagt 643  Q
    ||||||||||||| |||||||||||| |||| |||||| || | |||||  ||||| ||| ||||||||||||||    
T  53225685 gattcattgcataaatgatgtatttggtctacattctataccaaatacattaattattcaatgaatctaaaaagt 53225759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 542 - 640
Target Start/End: Original strand, 32714283 - 32714381
Alignment:
Q  542 tatttataagaaatatttgannnnnnngattcattgcatagatgatgtatttgatctatattctagacaagatacaccaattactcattgaatctaaaa 640  Q
    ||||||||||||| ||||||       |||||||| |||| |||||||||||  |||||||||||||||| ||||| |||| | | | |||||||||||    
T  32714283 tatttataagaaacatttgacttttttgattcattacataaatgatgtatttagtctatattctagacaaaatacatcaatcattgaatgaatctaaaa 32714381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 542 - 643
Target Start/End: Complemental strand, 4386270 - 4386169
Alignment:
Q  542 tatttataagaaatatttgannnnnnngattcattgcatagatgatgtatttgatctatattctagacaagatacaccaattactcattgaatctaaaaa 641  Q
    ||||||||||||| ||||||       |||||||| |||| |||||||||||  |||||||| |||| || ||||| |||||||| | ||||| ||||||    
T  4386270 tatttataagaaaaatttgacttttttgattcattacataaatgatgtatttagtctatattgtagataaaatacatcaattacttaatgaatttaaaaa 4386171  T
Q  642 gt 643  Q
    ||    
T  4386170 gt 4386169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 537 - 606
Target Start/End: Complemental strand, 19150862 - 19150793
Alignment:
Q  537 ggtcctatttataagaaatatttgannnnnnngattcattgcatagatgatgtatttgatctatattcta 606  Q
    |||||||||||||||||| |||| |       ||||||||||||| |||||||||||| |||||||||||    
T  19150862 ggtcctatttataagaaacattttactttttcgattcattgcataaatgatgtatttggtctatattcta 19150793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 583 - 643
Target Start/End: Original strand, 55951717 - 55951777
Alignment:
Q  583 atgatgtatttgatctatattctagacaagatacaccaattactcattgaatctaaaaagt 643  Q
    |||||||||||||| ||||||| ||||||||||||  ||||| ||| | ||||||||||||    
T  55951717 atgatgtatttgatttatattcaagacaagatacattaattaatcaataaatctaaaaagt 55951777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 541 - 641
Target Start/End: Original strand, 45828428 - 45828528
Alignment:
Q  541 ctatttataagaaatatttgannnnnnngattcattgcatagatgatgtatttgatctatattctagacaagatacaccaattactcattgaatctaaaa 640  Q
    |||||||||| ||||||||||       ||||| || |||| |||||||||||| | |||||| ||||| | |||||  ||||||||| |||||||||||    
T  45828428 ctatttataaaaaatatttgatttttttgattctttacataaatgatgtatttggtttatattatagaccaaatacattaattactcaatgaatctaaaa 45828527  T
Q  641 a 641  Q
    |    
T  45828528 a 45828528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 527 - 646
Target Start/End: Complemental strand, 47866184 - 47866066
Alignment:
Q  527 tactcgctccggtcctatttataagaaatatttgannnnnnngattcattgcatagatgatgtatttgatctatattctagacaagatacaccaattact 626  Q
    ||||| |||||||||||| ||||||||| | || |       ||||||||| |||| ||||||||||| ||||| |||||| | || |||| |||||| |    
T  47866184 tactccctccggtcctatatataagaaacaatttacttttttgattcattgaatagttgatgtatttggtctat-ttctaggctaggtacatcaattatt 47866086  T
Q  627 cattgaatctaaaaagttaa 646  Q
     | |||||||||||||||||    
T  47866085 gaatgaatctaaaaagttaa 47866066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 147 - 180
Target Start/End: Complemental strand, 6280267 - 6280234
Alignment:
Q  147 gtgtatttgtttcaagtttaccaaatttattcat 180  Q
    |||| |||||||||||||||||||||||||||||    
T  6280267 gtgtgtttgtttcaagtttaccaaatttattcat 6280234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 583 - 640
Target Start/End: Complemental strand, 14859798 - 14859741
Alignment:
Q  583 atgatgtatttgatctatattctagacaagatacaccaattactcattgaatctaaaa 640  Q
    |||||||||||  | |||||| ||||||||||||| ||||| |||| |||||||||||    
T  14859798 atgatgtatttagtatatattgtagacaagatacatcaatttctcaatgaatctaaaa 14859741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 569 - 646
Target Start/End: Original strand, 20459282 - 20459358
Alignment:
Q  569 gattcattgcatagatgatgtatttgatctatattctagacaagatacaccaattactcattgaatctaaaaagttaa 646  Q
    ||||||||| |||| ||||||||||| ||||| |||||| | || |||| |||||| | | |||||||||||||||||    
T  20459282 gattcattgaatagttgatgtatttggtctat-ttctaggctaggtacatcaattattgaatgaatctaaaaagttaa 20459358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 569 - 646
Target Start/End: Original strand, 20745373 - 20745449
Alignment:
Q  569 gattcattgcatagatgatgtatttgatctatattctagacaagatacaccaattactcattgaatctaaaaagttaa 646  Q
    ||||||||| |||| ||||||||||||||||| |||||| | || |||| |||||| | | |||||||||||| ||||    
T  20745373 gattcattgaatagttgatgtatttgatctat-ttctaggctaggtacatcaattattgaatgaatctaaaaaattaa 20745449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #33
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 525 - 643
Target Start/End: Complemental strand, 47943878 - 47943760
Alignment:
Q  525 aatactcgctccggtcctatttataagaaatatttgannnnnnngattcattgcatagatgatgtatttgatctatattctagacaagatacaccaatta 624  Q
    ||||||| |||||||| |||||||||  || ||||||       ||||||||||||| |||||||||||  |||||||| || || |  ||||  |||||    
T  47943878 aatactccctccggtcttatttataaataacatttgacatttttgattcattgcataaatgatgtatttagtctatattttataccaagtacattaatta 47943779  T
Q  625 ctcattgaatctaaaaagt 643  Q
    |||| | ||||||||||||    
T  47943778 ctcaattaatctaaaaagt 47943760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #34
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 524 - 561
Target Start/End: Original strand, 48361048 - 48361085
Alignment:
Q  524 taatactcgctccggtcctatttataagaaatatttga 561  Q
    |||||||| |||||||||||||||||||||| ||||||    
T  48361048 taatactccctccggtcctatttataagaaaaatttga 48361085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 65; Significance: 4e-28; HSPs: 24)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 65; E-Value: 4e-28
Query Start/End: Original strand, 526 - 643
Target Start/End: Original strand, 38040274 - 38040391
Alignment:
Q  526 atactcgctccggtcctatttataagaaatatttgannnnnnngattcattgcatagatgatgtatttgatctatattctagacaagatacaccaattac 625  Q
    |||||| || ||||||||||||||||||| ||||||       ||||||||||||| ||||| ||||||||||||||||||||||||||||| ||||||     
T  38040274 atactcccttcggtcctatttataagaaacatttgacttttttgattcattgcataaatgatatatttgatctatattctagacaagatacatcaattaa 38040373  T
Q  626 tcattgaatctaaaaagt 643  Q
    ||| ||||||||||||||    
T  38040374 tcaatgaatctaaaaagt 38040391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 64; E-Value: 2e-27
Query Start/End: Original strand, 527 - 647
Target Start/End: Original strand, 519832 - 519952
Alignment:
Q  527 tactcgctccggtcctatttataagaaatatttgannnnnnngattcattgcatagatgatgtatttgatctatattctagacaagatacaccaattact 626  Q
    ||||| |||||||||||||||||| ||| ||||||       |||| |||| ||| |||||||||||||||||||||||||| |||||||| ||||||||    
T  519832 tactccctccggtcctatttataataaacatttgacttttttgatttattgtataaatgatgtatttgatctatattctagataagatacatcaattact 519931  T
Q  627 cattgaatctaaaaagttaaa 647  Q
    || ||||||||||||||||||    
T  519932 caatgaatctaaaaagttaaa 519952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 62; E-Value: 3e-26
Query Start/End: Original strand, 533 - 647
Target Start/End: Complemental strand, 49944976 - 49944862
Alignment:
Q  533 ctccggtcctatttataagaaatatttgannnnnnngattcattgcatagatgatgtatttgatctatattctagacaagatacaccaattactcattga 632  Q
    ||||||||||||||| |||||| ||||||       ||||||||| ||| |||||||||||| |||||||||||||||||||||| |||||| ||| |||    
T  49944976 ctccggtcctatttacaagaaacatttgatttttttgattcattgtataaatgatgtatttggtctatattctagacaagatacatcaattattcaatga 49944877  T
Q  633 atctaaaaagttaaa 647  Q
    |||||||||||||||    
T  49944876 atctaaaaagttaaa 49944862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 60; E-Value: 4e-25
Query Start/End: Original strand, 539 - 647
Target Start/End: Original strand, 38737942 - 38738050
Alignment:
Q  539 tcctatttataagaaatatttgannnnnnngattcattgcatagatgatgtatttgatctatattctagacaagatacaccaattactcattgaatctaa 638  Q
    |||||||||||||||| ||||||       ||||||||||||| | |||||||||| | |||||||||||||||||||| |||||||||| |||||||||    
T  38737942 tcctatttataagaaacatttgacttttttgattcattgcataaaggatgtatttggtttatattctagacaagatacatcaattactcaatgaatctaa 38738041  T
Q  639 aaagttaaa 647  Q
    |||||||||    
T  38738042 aaagttaaa 38738050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 59; E-Value: 2e-24
Query Start/End: Original strand, 524 - 643
Target Start/End: Complemental strand, 34332628 - 34332509
Alignment:
Q  524 taatactcgctccggtcctatttataagaaatatttgannnnnnngattcattgcatagatgatgtatttgatctatattctagacaagatacaccaatt 623  Q
    |||||| | ||| |||||||||||||||||| ||||||       ||||||||| ||| |||||||||||| |||||||||||||||| ||||| |||||    
T  34332628 taataccccctctggtcctatttataagaaacatttgacttttttgattcattggataaatgatgtatttggtctatattctagacaaaatacatcaatt 34332529  T
Q  624 actcattgaatctaaaaagt 643  Q
    ||||| ||||||||||||||    
T  34332528 actcaatgaatctaaaaagt 34332509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 58; E-Value: 6e-24
Query Start/End: Original strand, 539 - 641
Target Start/End: Complemental strand, 15343074 - 15342972
Alignment:
Q  539 tcctatttataagaaatatttgannnnnnngattcattgcatagatgatgtatttgatctatattctagacaagatacaccaattactcattgaatctaa 638  Q
    |||||||||||||||||||||||       ||||||||||||| |||||||||||| ||||||||||||||||||||||  |||||| || |||||||||    
T  15343074 tcctatttataagaaatatttgatttttttgattcattgcataaatgatgtatttggtctatattctagacaagatacattaattacacaatgaatctaa 15342975  T
Q  639 aaa 641  Q
    |||    
T  15342974 aaa 15342972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 58; E-Value: 6e-24
Query Start/End: Original strand, 525 - 643
Target Start/End: Complemental strand, 26070975 - 26070857
Alignment:
Q  525 aatactcgctccggtcctatttataagaaatatttgannnnnnngattcattgcatagatgatgtatttgatctatattctagacaagatacaccaatta 624  Q
    ||||||| |||||||| ||||||||||||| |||| |       ||||||||||||| || ||||||||| ||||||||||||| |||||||| ||||||    
T  26070975 aatactctctccggtcttatttataagaaacattttacttttttgattcattgcataaataatgtatttggtctatattctagataagatacatcaatta 26070876  T
Q  625 ctcattgaatctaaaaagt 643  Q
    |||| ||||||||||||||    
T  26070875 ctcaatgaatctaaaaagt 26070857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 533 - 641
Target Start/End: Original strand, 44939071 - 44939179
Alignment:
Q  533 ctccggtcctatttataagaaatatttgannnnnnngattcattgcatagatgatgtatttgatctatattctagacaagatacaccaattactcattga 632  Q
    |||||||||||||||||||||| ||||||        |||||||| ||| |||||||||||| |||||||||||||  ||||||| |||||||||| |||    
T  44939071 ctccggtcctatttataagaaacatttgactttttttattcattgtataaatgatgtatttggtctatattctagattagatacatcaattactcaatga 44939170  T
Q  633 atctaaaaa 641  Q
    |||||||||    
T  44939171 atctaaaaa 44939179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 520 - 643
Target Start/End: Complemental strand, 26924369 - 26924246
Alignment:
Q  520 taattaatactcgctccggtcctatttataagaaatatttgannnnnnngattcattgcatagatgatgtatttgatctatattctagacaagatacacc 619  Q
    |||||||||||| |||||||||||||||||||||| ||||||       ||||||||| ||| |||||||||||| ||||||||||| || |  ||||      
T  26924369 taattaatactccctccggtcctatttataagaaacatttgacttttttgattcattgaataaatgatgtatttggtctatattctataccaagtacatt 26924270  T
Q  620 aattactcattgaatctaaaaagt 643  Q
    ||| ||||| ||||| ||||||||    
T  26924269 aatgactcaatgaatttaaaaagt 26924246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 46; E-Value: 9e-17
Query Start/End: Original strand, 569 - 646
Target Start/End: Original strand, 38590107 - 38590184
Alignment:
Q  569 gattcattgcatagatgatgtatttgatctatattctagacaagatacaccaattactcattgaatctaaaaagttaa 646  Q
    |||||||| |||| || ||||||||| ||||||||||| || ||||||| |||||||||| |||||||||||||||||    
T  38590107 gattcatttcataaataatgtatttggtctatattctataccagatacatcaattactcaatgaatctaaaaagttaa 38590184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 46; E-Value: 9e-17
Query Start/End: Original strand, 570 - 643
Target Start/End: Original strand, 50155340 - 50155413
Alignment:
Q  570 attcattgcatagatgatgtatttgatctatattctagacaagatacaccaattactcattgaatctaaaaagt 643  Q
    |||||||||||| |||||||||||| |||||||| ||||| | ||||| |||||||||| ||||||||||||||    
T  50155340 attcattgcataaatgatgtatttggtctatattatagaccaaatacatcaattactcaatgaatctaaaaagt 50155413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 45; E-Value: 4e-16
Query Start/End: Original strand, 569 - 641
Target Start/End: Complemental strand, 23923657 - 23923585
Alignment:
Q  569 gattcattgcatagatgatgtatttgatctatattctagacaagatacaccaattactcattgaatctaaaaa 641  Q
    ||||||||||||| |||||| ||||| |||||||||||||||| |||||  ||||||||| ||||||||||||    
T  23923657 gattcattgcataaatgatgcatttggtctatattctagacaatatacattaattactcaatgaatctaaaaa 23923585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 536 - 641
Target Start/End: Complemental strand, 11386294 - 11386190
Alignment:
Q  536 cggtcctatttataagaaatatttgannnnnnngattcattgcatagatgatgtatttgatctatattctagacaagatacaccaattactcattgaatc 635  Q
    ||||||||||||||||||| ||||||       ||||||||||||| |||||||||||  |||||||||||||| ||| ||| |||||| ||| ||||||    
T  11386294 cggtcctatttataagaaacatttgacttttt-gattcattgcataaatgatgtatttcgtctatattctagaccagaaacatcaattattcaatgaatc 11386196  T
Q  636 taaaaa 641  Q
    ||||||    
T  11386195 taaaaa 11386190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 534 - 647
Target Start/End: Original strand, 27819317 - 27819431
Alignment:
Q  534 tccggtcctatttataagaaatatttgannnnnnngattcattgcatagatgatgt-atttgatctatattctagacaagatacaccaattactcattga 632  Q
    ||||||| ||||||||| ||||||||||       |||||||| |||| ||||| | ||||||| |||||| ||||||| ||||||||| || ||| |||    
T  27819317 tccggtcttatttataaaaaatatttgacttttttgattcatttcataaatgatattatttgatttatattttagacaaaatacaccaaatattcaatga 27819416  T
Q  633 atctaaaaagttaaa 647  Q
    |||||||||||||||    
T  27819417 atctaaaaagttaaa 27819431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 41; E-Value: 0.00000000000009
Query Start/End: Original strand, 569 - 641
Target Start/End: Complemental strand, 6661621 - 6661549
Alignment:
Q  569 gattcattgcatagatgatgtatttgatctatattctagacaagatacaccaattactcattgaatctaaaaa 641  Q
    |||| |||||||| |||||||||||| ||||||||||| ||||||||||  ||||||| | ||||||||||||    
T  6661621 gattaattgcataaatgatgtatttggtctatattctatacaagatacattaattactaaatgaatctaaaaa 6661549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 520 - 606
Target Start/End: Original strand, 26760165 - 26760251
Alignment:
Q  520 taattaatactcgctccggtcctatttataagaaatatttgannnnnnngattcattgcatagatgatgtatttgatctatattcta 606  Q
    ||||||||| || ||| |||||||||||||||||| ||||||       ||||||||| ||| |||||||||||| |||||||||||    
T  26760165 taattaatattccctcgggtcctatttataagaaacatttgacttttttgattcattgaataaatgatgtatttggtctatattcta 26760251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 581 - 643
Target Start/End: Original strand, 7375522 - 7375584
Alignment:
Q  581 agatgatgtatttgatctatattctagacaagatacaccaattactcattgaatctaaaaagt 643  Q
    |||||| ||||||| | ||||||||||||||||||||  |||||| || ||||||||||||||    
T  7375522 agatgaagtatttggtttatattctagacaagatacattaattacacaatgaatctaaaaagt 7375584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 535 - 617
Target Start/End: Original strand, 47912824 - 47912904
Alignment:
Q  535 ccggtcctatttataagaaatatttgannnnnnngattcattgcatagatgatgtatttgatctatattctagacaagataca 617  Q
    |||||||||||||||||||||||||||       |||| |||| ||| || ||||||||||||||||  ||||||||||||||    
T  47912824 ccggtcctatttataagaaatatttgacttttttgatttattgtataaataatgtatttgatctata--ctagacaagataca 47912904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 570 - 643
Target Start/End: Complemental strand, 640627 - 640555
Alignment:
Q  570 attcattgcatagatgatgtatttgatctatattctagacaagatacaccaattactcattgaatctaaaaagt 643  Q
    |||||||| ||| || ||||||||  |||||||| |||| |||||||| |||||||||| ||||||||||||||    
T  640627 attcattgtataaattatgtatttagtctatattttagataagatacatcaattactca-tgaatctaaaaagt 640555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 537 - 638
Target Start/End: Complemental strand, 8971367 - 8971266
Alignment:
Q  537 ggtcctatttataagaaatatttgannnnnnngattcattgcatagatgatgtatttgatctatattcta-gacaagatacaccaattactcattgaatc 635  Q
    |||||||||||||||||||||||||       ||||||||||||| || | || |||||||||||||||| | ||| |||||  ||||||||| ||||||    
T  8971367 ggtcctatttataagaaatatttgacttttttgattcattgcataaataacgtgtttgatctatattctatgtcaa-atacattaattactcaatgaatc 8971269  T
Q  636 taa 638  Q
    |||    
T  8971268 taa 8971266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 574 - 647
Target Start/End: Original strand, 37515136 - 37515209
Alignment:
Q  574 attgcatagatgatgtatttgatctatattctagacaagatacaccaattactcattgaatctaaaaagttaaa 647  Q
    |||||||| || |||||||| ||| |||||| |||||| |||||  ||||||| | ||||||||||||||||||    
T  37515136 attgcataaataatgtatttaatccatattccagacaacatacattaattacttaatgaatctaaaaagttaaa 37515209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 522 - 634
Target Start/End: Complemental strand, 37179064 - 37178952
Alignment:
Q  522 attaatactcgctccggtcctatttataagaaatatttgannnnnnngattcattgcatagatgatgtatttgatctatattctagacaagatacaccaa 621  Q
    |||||||||  |||||| |||| |||||||||| ||||||       |||| |||| ||| |||||||||||  |||||||| |||||||||||||  ||    
T  37179064 attaatacttcctccggccctaattataagaaacatttgacttttttgatttattgtataaatgatgtatttagtctatattttagacaagatacattaa 37178965  T
Q  622 ttactcattgaat 634  Q
    |||| || |||||    
T  37178964 ttacacaatgaat 37178952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 526 - 559
Target Start/End: Original strand, 5891724 - 5891757
Alignment:
Q  526 atactcgctccggtcctatttataagaaatattt 559  Q
    |||||| |||||||||||||||||||||||||||    
T  5891724 atactccctccggtcctatttataagaaatattt 5891757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 569 - 646
Target Start/End: Complemental strand, 34662788 - 34662712
Alignment:
Q  569 gattcattgcatagatgatgtatttgatctatattctagacaagatacaccaattactcattgaatctaaaaagttaa 646  Q
    ||||||||| |||| ||||||||||| ||||| |||||| | || |||| |||||| | | |||||||||||||||||    
T  34662788 gattcattgaatagttgatgtatttggtctat-ttctaggctaggtacatcaattattgaatgaatctaaaaagttaa 34662712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 63; Significance: 7e-27; HSPs: 22)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 63; E-Value: 7e-27
Query Start/End: Original strand, 526 - 641
Target Start/End: Complemental strand, 33478257 - 33478142
Alignment:
Q  526 atactcgctccggtcctatttataagaaatatttgannnnnnngattcattgcatagatgatgtatttgatctatattctagacaagatacaccaattac 625  Q
    |||||| |||||||||||||||||||||| ||||||       ||||||||||||| ||||||||||||  ||||||||||||| ||||||| |||||||    
T  33478257 atactccctccggtcctatttataagaaacatttgacatttttgattcattgcataaatgatgtatttggcctatattctagacgagatacatcaattac 33478158  T
Q  626 tcattgaatctaaaaa 641  Q
    ||| ||||||||||||    
T  33478157 tcaatgaatctaaaaa 33478142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 62; E-Value: 3e-26
Query Start/End: Original strand, 533 - 643
Target Start/End: Original strand, 5002145 - 5002255
Alignment:
Q  533 ctccggtcctatttataagaaatatttgannnnnnngattcattgcatagatgatgtatttgatctatattctagacaagatacaccaattactcattga 632  Q
    |||||||||||||||||||||| ||||||       |||| |||||||| ||||||||||||||||||||| ||||||||||||| |||||||||| | |    
T  5002145 ctccggtcctatttataagaaacatttgacttttttgattaattgcataaatgatgtatttgatctatattttagacaagatacatcaattactcaataa 5002244  T
Q  633 atctaaaaagt 643  Q
    |||||||||||    
T  5002245 atctaaaaagt 5002255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 62; E-Value: 3e-26
Query Start/End: Original strand, 537 - 643
Target Start/End: Complemental strand, 18473614 - 18473508
Alignment:
Q  537 ggtcctatttataagaaatatttgannnnnnngattcattgcatagatgatgtatttgatctatattctagacaagatacaccaattactcattgaatct 636  Q
    |||||||||||||||||| ||||||       ||||||||| ||| |||||| |||||||||||||||||||||||||||| |||||||||| |||||||    
T  18473614 ggtcctatttataagaaacatttgacttttttgattcattgtataaatgatgcatttgatctatattctagacaagatacatcaattactcaatgaatct 18473515  T
Q  637 aaaaagt 643  Q
    |||||||    
T  18473514 aaaaagt 18473508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 53; E-Value: 6e-21
Query Start/End: Original strand, 534 - 643
Target Start/End: Original strand, 34297180 - 34297289
Alignment:
Q  534 tccggtcctatttataagaaatatttgannnnnnngattcattgcatagatgatgtatttgatctatattctagacaagatacaccaattactcattgaa 633  Q
    ||||||| ||||||||||||||||||||        |||||||||||| |||||||| |||||||||||| ||||||||| ||| |||||||| | ||||    
T  34297180 tccggtcttatttataagaaatatttgacttttttaattcattgcataaatgatgtaattgatctatattttagacaagacacatcaattacttaatgaa 34297279  T
Q  634 tctaaaaagt 643  Q
    ||||||||||    
T  34297280 tctaaaaagt 34297289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 50; E-Value: 4e-19
Query Start/End: Original strand, 541 - 643
Target Start/End: Original strand, 36286072 - 36286174
Alignment:
Q  541 ctatttataagaaatatttgannnnnnngattcattgcatagatgatgtatttgatctatattctagacaagatacaccaattactcattgaatctaaaa 640  Q
    |||||||||||||||| ||||       ||||||||||||| |||||||| ||| ||||||||||||||| |||||| |||||||||| | |||||||||    
T  36286072 ctatttataagaaatacttgatttttttgattcattgcataaatgatgtagttggtctatattctagacatgatacatcaattactcaattaatctaaaa 36286171  T
Q  641 agt 643  Q
    |||    
T  36286172 agt 36286174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 48; E-Value: 6e-18
Query Start/End: Original strand, 525 - 641
Target Start/End: Complemental strand, 22102059 - 22101943
Alignment:
Q  525 aatactcgctccggtcctatttataagaaatatttgannnnnnngattcattgcatagatgatgtatttgatctatattctagacaagatacaccaatta 624  Q
    ||||||| ||||| || ||||||||||||||||||||       |||| |||| ||| || |||||||||||||||||| |||||||||||||  |||||    
T  22102059 aatactccctccgatcatatttataagaaatatttgacttttttgatttattgtataaataatgtatttgatctatattttagacaagatacattaatta 22101960  T
Q  625 ctcattgaatctaaaaa 641  Q
    | || ||||||||||||    
T  22101959 cacaatgaatctaaaaa 22101943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 45; E-Value: 4e-16
Query Start/End: Original strand, 532 - 641
Target Start/End: Complemental strand, 16619162 - 16619053
Alignment:
Q  532 gctccggtcctatttataagaaatatttgannnnnnngattcattgcatagatgatgtatttgatctatattctagacaagatacaccaattactcattg 631  Q
    ||||||||| ||||||||||||||| ||||       |||| |||||||| ||||| |||||| ||| ||||||||||| |||||| ||||||||||  |    
T  16619162 gctccggtcatatttataagaaatagttgacgtttttgatttattgcataaatgatatatttggtctctattctagacatgatacatcaattactcaacg 16619063  T
Q  632 aatctaaaaa 641  Q
    ||||||||||    
T  16619062 aatctaaaaa 16619053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 534 - 640
Target Start/End: Original strand, 919648 - 919754
Alignment:
Q  534 tccggtcctatttataagaaatatttgannnnnnngattcattgcatagatgatgtatttgatctatattctagacaagatacaccaattactcattgaa 633  Q
    ||||||| ||| |||| |||||||||||       ||||||||  ||| |||||||||||| ||||||||||| || ||||||| |||||||||| ||||    
T  919648 tccggtcatatatataggaaatatttgacttttttgattcattcaataaatgatgtatttggtctatattctatactagatacatcaattactcaatgaa 919747  T
Q  634 tctaaaa 640  Q
    |||||||    
T  919748 tctaaaa 919754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 524 - 641
Target Start/End: Complemental strand, 29299510 - 29299392
Alignment:
Q  524 taatactcgctccggtcctatttataagaaatatttgannnnnnnga-ttcattgcatagatgatgtatttgatctatattctagacaagatacaccaat 622  Q
    |||||||| ||||||||||| |||||||||| ||||||       || ||||||| ||| |||||||||| | |||||||| ||||||| ||||| ||||    
T  29299510 taatactccctccggtcctagttataagaaacatttgacttttttgaattcattgtataaatgatgtattcggtctatattttagacaaaatacatcaat 29299411  T
Q  623 tactcattgaatctaaaaa 641  Q
     ||||| ||||||||||||    
T  29299410 cactcaatgaatctaaaaa 29299392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 570 - 647
Target Start/End: Original strand, 36434720 - 36434797
Alignment:
Q  570 attcattgcatagatgatgtatttgatctatattctagacaagatacaccaattactcattgaatctaaaaagttaaa 647  Q
    ||||||| |||| ||||| |||||| | |||||| ||||||||||||| |||||||| | ||||||||||||||||||    
T  36434720 attcattacataaatgatatatttggtttatattttagacaagatacatcaattacttaatgaatctaaaaagttaaa 36434797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 525 - 617
Target Start/End: Original strand, 21488280 - 21488372
Alignment:
Q  525 aatactcgctccggtcctatttataagaaatatttgannnnnnngattcattgcatagatgatgtatttgatctatattctagacaagataca 617  Q
    ||||||| |||  ||||||||||||||||||||||||        |||||||||||| || ||||||||| |||||||||||||||| |||||    
T  21488280 aatactccctcatgtcctatttataagaaatatttgacttttttaattcattgcataaataatgtatttggtctatattctagacaaaataca 21488372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 533 - 643
Target Start/End: Complemental strand, 11932113 - 11932003
Alignment:
Q  533 ctccggtcctatttataagaaatatttgannnnnnngattcattgcatagatgatgtatttgatctatattctagacaagatacaccaattactcattga 632  Q
    ||||||||||||||| |||||| |||| |       |||| |||  ||| |||||||||||| |||||||| |||||||||||||  |||||| || |||    
T  11932113 ctccggtcctatttaaaagaaacatttaatttttttgatttattatataaatgatgtatttggtctatattttagacaagatacattaattacacaatga 11932014  T
Q  633 atctaaaaagt 643  Q
    |||||||||||    
T  11932013 atctaaaaagt 11932003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 570 - 622
Target Start/End: Complemental strand, 1248935 - 1248883
Alignment:
Q  570 attcattgcatagatgatgtatttgatctatattctagacaagatacaccaat 622  Q
    |||||||  ||| ||||||||||||||||||||||||||||||||||| ||||    
T  1248935 attcatttgataaatgatgtatttgatctatattctagacaagatacatcaat 1248883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 570 - 642
Target Start/End: Complemental strand, 39239901 - 39239829
Alignment:
Q  570 attcattgcatagatgatgtatttgatctatattctagacaagatacaccaattactcattgaatctaaaaag 642  Q
    |||||||||||| || || |||||||||||||||| | ||||||||||  |||||| || |||||||||||||    
T  39239901 attcattgcataaataatatatttgatctatattcaatacaagatacattaattacacaatgaatctaaaaag 39239829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 534 - 617
Target Start/End: Original strand, 13664952 - 13665035
Alignment:
Q  534 tccggtcctatttataagaaatatttgannnnnnngattcattgcatagatgatgtatttgatctatattctagacaagataca 617  Q
    ||||||| ||||||||||||| ||||||        ||| |||||||| |||||||||||||||||||||||| |||| |||||    
T  13664952 tccggtcatatttataagaaacatttgacttttttaattaattgcataaatgatgtatttgatctatattctaaacaacataca 13665035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 569 - 643
Target Start/End: Original strand, 32452269 - 32452343
Alignment:
Q  569 gattcattgcatagatgatgtatttgatctatattctagacaagatacaccaattactcattgaatctaaaaagt 643  Q
    ||||||||||||| ||  |||||||| ||||||||||||||||| ||||  |||||| || ||||| ||||||||    
T  32452269 gattcattgcataaatattgtatttggtctatattctagacaagctacattaattacgcaatgaatataaaaagt 32452343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 586 - 646
Target Start/End: Complemental strand, 14723476 - 14723416
Alignment:
Q  586 atgtatttgatctatattctagacaagatacaccaattactcattgaatctaaaaagttaa 646  Q
    ||||||||| |||||||||||||  ||||| | |||||||||| ||||| |||||||||||    
T  14723476 atgtatttggtctatattctagattagatatatcaattactcaatgaatttaaaaagttaa 14723416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 569 - 617
Target Start/End: Original strand, 18391539 - 18391587
Alignment:
Q  569 gattcattgcatagatgatgtatttgatctatattctagacaagataca 617  Q
    ||||||||||||| || |||||||||||||||||| || ||||||||||    
T  18391539 gattcattgcataaataatgtatttgatctatattataaacaagataca 18391587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 526 - 643
Target Start/End: Complemental strand, 38394578 - 38394461
Alignment:
Q  526 atactcgctccggtcctatttataagaaatatttgannnnnnngattcattgcatagatgatgtatttgatctatattctagacaagatacaccaattac 625  Q
    |||||| || || |||||||||||||||| |||| |       ||||||||||||| |||||||||||| |||| |||||| || |  ||||  |||||     
T  38394578 atactcccttcgatcctatttataagaaacattttacttttttgattcattgcataaatgatgtatttggtctacattctataccaagtacattaattat 38394479  T
Q  626 tcattgaatctaaaaagt 643  Q
    ||| ||||||||||||||    
T  38394478 tcaatgaatctaaaaagt 38394461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 589 - 647
Target Start/End: Complemental strand, 18718325 - 18718267
Alignment:
Q  589 tatttgatctatattctagacaagatacaccaattactcattgaatctaaaaagttaaa 647  Q
    |||||| ||||||||||||||||||||||  ||||||||| | ||| ||||| ||||||    
T  18718325 tatttggtctatattctagacaagatacattaattactcaataaatttaaaatgttaaa 18718267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 145 - 178
Target Start/End: Original strand, 1664454 - 1664487
Alignment:
Q  145 gagtgtatttgtttcaagtttaccaaatttattc 178  Q
    |||||| |||||||||||||||||||||||||||    
T  1664454 gagtgtgtttgtttcaagtttaccaaatttattc 1664487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 570 - 647
Target Start/End: Complemental strand, 38362485 - 38362408
Alignment:
Q  570 attcattgcatagatgatgtatttgatctatattctagacaagatacaccaattactcattgaatctaaaaagttaaa 647  Q
    |||||||||||| | ||| |||||  |||||||| |||| |||||||| |||||  ||| | ||||||||||||||||    
T  38362485 attcattgcataaacgatatatttagtctatattttagataagatacatcaatttttcagttaatctaaaaagttaaa 38362408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 62; Significance: 3e-26; HSPs: 48)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 62; E-Value: 3e-26
Query Start/End: Original strand, 537 - 643
Target Start/End: Original strand, 32457222 - 32457328
Alignment:
Q  537 ggtcctatttataagaaatatttgannnnnnngattcattgcatagatgatgtatttgatctatattctagacaagatacaccaattactcattgaatct 636  Q
    |||||||||||||||||||||||||       ||||||||||||| |||||||||||  |||||||||||||||||||||| |||||||| | |||||||    
T  32457222 ggtcctatttataagaaatatttgacttttttgattcattgcataaatgatgtatttagtctatattctagacaagatacatcaattacttaatgaatct 32457321  T
Q  637 aaaaagt 643  Q
    |||||||    
T  32457322 aaaaagt 32457328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 62; E-Value: 3e-26
Query Start/End: Original strand, 527 - 641
Target Start/End: Original strand, 38982998 - 38983112
Alignment:
Q  527 tactcgctccggtcctatttataagaaatatttgannnnnnngattcattgcatagatgatgtatttgatctatattctagacaagatacaccaattact 626  Q
    ||||| |||||||||||||||||| ||||||||||       ||||||||||||| |||||||||||  |||||||||||||||||||||| |||||||     
T  38982998 tactccctccggtcctatttataaaaaatatttgacttttttgattcattgcataaatgatgtattttgtctatattctagacaagatacatcaattaca 38983097  T
Q  627 cattgaatctaaaaa 641  Q
    || ||||||||||||    
T  38983098 caatgaatctaaaaa 38983112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 54; E-Value: 2e-21
Query Start/End: Original strand, 533 - 643
Target Start/End: Complemental strand, 10205069 - 10204959
Alignment:
Q  533 ctccggtcctatttataagaaatatttgannnnnnngattcattgcatagatgatgtatttgatctatattctagacaagatacaccaattactcattga 632  Q
    ||||| |||||||||||||||||||||||       ||||||||| ||| |||||||||||  |||||||| ||||||||||||| ||||| |||| |||    
T  10205069 ctccgatcctatttataagaaatatttgactcttttgattcattgtataaatgatgtatttagtctatattttagacaagatacatcaattgctcaatga 10204970  T
Q  633 atctaaaaagt 643  Q
    |||||||||||    
T  10204969 atctaaaaagt 10204959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 50; E-Value: 4e-19
Query Start/End: Original strand, 533 - 643
Target Start/End: Original strand, 7943444 - 7943554
Alignment:
Q  533 ctccggtcctatttataagaaatatttgannnnnnngattcattgcatagatgatgtatttgatctatattctagacaagatacaccaattactcattga 632  Q
    |||||||| ||||||||||| ||||||||        |||||||||||| ||||| |||||| |||||||| ||||||||||||| |||||| ||| |||    
T  7943444 ctccggtcttatttataagagatatttgactttttttattcattgcataaatgatatatttggtctatattgtagacaagatacatcaattattcaatga 7943543  T
Q  633 atctaaaaagt 643  Q
    |||||||||||    
T  7943544 atctaaaaagt 7943554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 49; E-Value: 2e-18
Query Start/End: Original strand, 533 - 646
Target Start/End: Original strand, 11030197 - 11030310
Alignment:
Q  533 ctccggtcctatttataagaaatatttgannnnnnngattcattgcatagatgatgtatttgatctatattctagacaagatacaccaattactcattga 632  Q
    ||||| |||||| ||||||||| ||||||       |||||||| |||| |||||||||||| ||||||||||| |  ||||||| |||||||||| |||    
T  11030197 ctccgatcctatatataagaaacatttgacttttttgattcattacataaatgatgtatttggtctatattctatatcagatacatcaattactcaatga 11030296  T
Q  633 atctaaaaagttaa 646  Q
    ||||||||||||||    
T  11030297 atctaaaaagttaa 11030310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 48; E-Value: 6e-18
Query Start/End: Original strand, 527 - 643
Target Start/End: Original strand, 30758719 - 30758834
Alignment:
Q  527 tactcgctccggtcctatttataagaaatatttgannnnnnngattcattgcatagatgatgtatttgatctatattctagacaagatacaccaattact 626  Q
    ||||| || ||||||||||||||||||||||||||        |||||||||||| ||| |||||||| |||||| | ||||||||||||| ||||||||    
T  30758719 tactctcttcggtcctatttataagaaatatttgactttttttattcattgcataaatggtgtatttggtctatactttagacaagatacatcaattact 30758818  T
Q  627 cattgaatctaaaaagt 643  Q
    || | ||||||||||||    
T  30758819 caat-aatctaaaaagt 30758834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 526 - 641
Target Start/End: Complemental strand, 29989042 - 29988927
Alignment:
Q  526 atactcgctccggtcctatttataagaaatatttgannnnnnngattcattgcatagatgatgtatttgatctatattctagacaagatacaccaattac 625  Q
    |||||| |||| |||||||||| |||||| ||||||       ||||||||||||| ||||||||||||||||||||||||||||| ||| |  ||||||    
T  29989042 atactccctccagtcctatttagaagaaacatttgacttttttgattcattgcataaatgatgtatttgatctatattctagacaaaatatattaattac 29988943  T
Q  626 tcattgaatctaaaaa 641  Q
     || ||||| ||||||    
T  29988942 acaatgaatataaaaa 29988927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 46; E-Value: 9e-17
Query Start/End: Original strand, 525 - 643
Target Start/End: Original strand, 9152376 - 9152494
Alignment:
Q  525 aatactcgctccggtcctatttataagaaatatttgannnnnnngattcattgcatagatgatgtatttgatctatattctagacaagatacaccaatta 624  Q
    ||||||| ||||||||||||||| |||||| ||||||       || |||||  |||  ||||||||||| |||||||| ||||| ||||||| ||||||    
T  9152376 aatactccctccggtcctatttacaagaaacatttgacttttttgagtcattaaataattgatgtatttggtctatattttagactagatacatcaatta 9152475  T
Q  625 ctcattgaatctaaaaagt 643  Q
    |||| ||||||||||||||    
T  9152476 ctcaatgaatctaaaaagt 9152494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 45; E-Value: 4e-16
Query Start/End: Original strand, 534 - 643
Target Start/End: Original strand, 4410783 - 4410892
Alignment:
Q  534 tccggtcctatttataagaaatatttgannnnnnngattcattgcatagatgatgtatttgatctatattctagacaagatacaccaattactcattgaa 633  Q
    |||| |||||||||||||||| |||| |       |||| |||||||| ||||||||||||||||||||| || ||||||||||  |||||| || ||||    
T  4410783 tccgatcctatttataagaaacatttaacctttttgatttattgcataaatgatgtatttgatctatattttaaacaagatacattaattacacaatgaa 4410882  T
Q  634 tctaaaaagt 643  Q
    ||||||||||    
T  4410883 tctaaaaagt 4410892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 527 - 643
Target Start/End: Complemental strand, 12962854 - 12962738
Alignment:
Q  527 tactcgctccggtcctatttataagaaatatttgannnnnnngattcattgcatagatgatgtatttgatctatattctagacaagatacaccaattact 626  Q
    ||||| ||| |||||||||||||||||| ||||||       ||||||||||||| |||||||||||| |||||||| || || |  ||||  |||||||    
T  12962854 tactccctctggtcctatttataagaaacatttgacttttttgattcattgcataaatgatgtatttggtctatattttataccaagtacattaattact 12962755  T
Q  627 cattgaatctaaaaagt 643  Q
    || ||||||||||||||    
T  12962754 caatgaatctaaaaagt 12962738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 527 - 643
Target Start/End: Complemental strand, 30761527 - 30761411
Alignment:
Q  527 tactcgctccggtcctatttataagaaatatttgannnnnnngattcattgcatagatgatgtatttgatctatattctagacaagatacaccaattact 626  Q
    ||||| |||||||||||||||||||||| ||||||       ||||||||||| | |  ||||||||  |||||||||||||||||||| |  |||||||    
T  30761527 tactccctccggtcctatttataagaaacatttgacttttttgattcattgcacaaaatatgtatttagtctatattctagacaagataaattaattact 30761428  T
Q  627 cattgaatctaaaaagt 643  Q
    || ||||| ||||||||    
T  30761427 caatgaatgtaaaaagt 30761411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 539 - 642
Target Start/End: Original strand, 35728475 - 35728579
Alignment:
Q  539 tcctatttataagaaatatttgannnnnnn-gattcattgcatagatgatgtatttgatctatattctagacaagatacaccaattactcattgaatcta 637  Q
    |||||||||||||||||||||||        ||||||||||||| ||||| |||||| ||||||||||| |||||||||| |||||| ||| ||||| ||    
T  35728475 tcctatttataagaaatatttgatcttttttgattcattgcataaatgatatatttggtctatattctaaacaagatacatcaattattcaatgaattta 35728574  T
Q  638 aaaag 642  Q
    |||||    
T  35728575 aaaag 35728579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 43; E-Value: 0.000000000000006
Query Start/End: Original strand, 569 - 643
Target Start/End: Original strand, 41153152 - 41153226
Alignment:
Q  569 gattcattgcatagatgatgtatttgatctatattctagacaagatacaccaattactcattgaatctaaaaagt 643  Q
    ||||||||||||| |||||||||||| |||||||| || || | ||||| |||||||||| ||||||||||||||    
T  41153152 gattcattgcataaatgatgtatttggtctatattataaaccaaatacatcaattactcaatgaatctaaaaagt 41153226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 533 - 643
Target Start/End: Complemental strand, 28014416 - 28014306
Alignment:
Q  533 ctccggtcctatttataagaaatatttgannnnnnngattcattgcatagatgatgtatttgatctatattctagacaagatacaccaattactcattga 632  Q
    ||||| |||||||||||||||| ||||||        |||||||||||| |||||||||||| |||||| | |||||||||||||  |||||  || |||    
T  28014416 ctccgatcctatttataagaaacatttgaccttttttattcattgcataaatgatgtatttggtctatactatagacaagatacaataattatacaatga 28014317  T
Q  633 atctaaaaagt 643  Q
    |||||||||||    
T  28014316 atctaaaaagt 28014306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 533 - 623
Target Start/End: Complemental strand, 28494847 - 28494757
Alignment:
Q  533 ctccggtcctatttataagaaatatttgannnnnnngattcattgcatagatgatgtatttgatctatattctagacaagatacaccaatt 623  Q
    ||||||| |||||||||||||| ||||||       ||||||||||||| ||||| |||||| |||||||||||||||| ||||| |||||    
T  28494847 ctccggttctatttataagaaacatttgatttttttgattcattgcataaatgatatatttggtctatattctagacaatatacatcaatt 28494757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 574 - 643
Target Start/End: Complemental strand, 39445097 - 39445028
Alignment:
Q  574 attgcatagatgatgtatttgatctatattctagacaagatacaccaattactcattgaatctaaaaagt 643  Q
    |||||||| ||| ||||||| ||||||||||||||||| ||||| |||||||||| ||||||| ||||||    
T  39445097 attgcataaatggtgtatttaatctatattctagacaaaatacatcaattactcaatgaatcttaaaagt 39445028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 41; E-Value: 0.00000000000009
Query Start/End: Original strand, 570 - 646
Target Start/End: Complemental strand, 20555364 - 20555288
Alignment:
Q  570 attcattgcatagatgatgtatttgatctatattctagacaagatacaccaattactcattgaatctaaaaagttaa 646  Q
    ||||||| |||| || ||||||||| |||||||||||||||||||||| |||||| ||| || ||||||||| ||||    
T  20555364 attcattacataaataatgtatttggtctatattctagacaagatacatcaattattcaatgtatctaaaaaattaa 20555288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 41; E-Value: 0.00000000000009
Query Start/End: Original strand, 542 - 643
Target Start/End: Complemental strand, 33824484 - 33824383
Alignment:
Q  542 tatttataagaaatatttgannnnnnngattcattgcatagatgatgtatttgatctatattctagacaagatacaccaattactcattgaatctaaaaa 641  Q
    ||||||||||||||||||||       ||||||||| ||| ||||| ||||| || |||||| ||||||||||| | |||||||||| ||||| ||||||    
T  33824484 tatttataagaaatatttgacttttctgattcattgtataaatgatatatttaatatatattttagacaagatatatcaattactcaatgaatttaaaaa 33824385  T
Q  642 gt 643  Q
    ||    
T  33824384 gt 33824383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 41; E-Value: 0.00000000000009
Query Start/End: Original strand, 526 - 643
Target Start/End: Original strand, 43713972 - 43714088
Alignment:
Q  526 atactcgctccggtcctatttataagaaatatttgannnnnnngattcattgcatagatgatgtatttgatctatattctagacaagatacaccaattac 625  Q
    |||||| ||||| || ||||||||||||| | ||||       ||||||||| ||| || ||||||||| |||||||| ||||||||||||| |||||||    
T  43713972 atactccctccgctcttatttataagaaacaattgatttttttgattcattgaataaattatgtatttggtctatatt-tagacaagatacatcaattac 43714070  T
Q  626 tcattgaatctaaaaagt 643  Q
    ||| | ||||||||||||    
T  43714071 tcagtaaatctaaaaagt 43714088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 542 - 643
Target Start/End: Complemental strand, 12873857 - 12873756
Alignment:
Q  542 tatttataagaaatatttgannnnnnngattcattgcatagatgatgtatttgatctatattctagacaagatacaccaattactcattgaatctaaaaa 641  Q
    ||||||||| ||||||||||       ||||||||||||| |||||||||||  ||||||||||| || | |||||  ||||||| | ||||||||||||    
T  12873857 tatttataaaaaatatttgactttattgattcattgcataaatgatgtatttagtctatattctataccaaatacattaattacttaatgaatctaaaaa 12873758  T
Q  642 gt 643  Q
    ||    
T  12873757 gt 12873756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 537 - 646
Target Start/End: Original strand, 38554467 - 38554576
Alignment:
Q  537 ggtcctatttataagaaatatttgannnnnnngattcattgcatagatgatgtatttgatctatattctagacaagatacaccaattactcattgaatct 636  Q
    |||||||||||||||||| ||||||       |||||||| |||| || ||||||||| ||||||||||| || |  ||||  ||||||||| ||||| |    
T  38554467 ggtcctatttataagaaacatttgactattttgattcattacataaataatgtatttggtctatattctataccaagtacattaattactcaatgaattt 38554566  T
Q  637 aaaaagttaa 646  Q
    ||||||||||    
T  38554567 aaaaagttaa 38554576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 525 - 643
Target Start/End: Original strand, 33273967 - 33274085
Alignment:
Q  525 aatactcgctccggtcctatttataagaaatatttgannnnnnngattcattgcatagatgatgtatttgatctatattctagacaagatacaccaatta 624  Q
    ||||||| ||||| | ||||||||||||||  |||||       ||||||||| ||| ||||| ||||||   |||||| ||||||| ||||| ||||||    
T  33273967 aatactccctccgattctatttataagaaaactttgacttttttgattcattgtataaatgatatatttggcttatattttagacaacatacatcaatta 33274066  T
Q  625 ctcattgaatctaaaaagt 643  Q
    || | ||||||||||||||    
T  33274067 cttaatgaatctaaaaagt 33274085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 569 - 641
Target Start/End: Original strand, 3837451 - 3837523
Alignment:
Q  569 gattcattgcatagatgatgtatttgatctatattctagacaagatacaccaattactcattgaatctaaaaa 641  Q
    ||||||||||||| || ||||||||| |||||||| || |||||||| | |||||||||| || ||| |||||    
T  3837451 gattcattgcataaataatgtatttggtctatattttaaacaagatagatcaattactcaatgcatcgaaaaa 3837523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 569 - 641
Target Start/End: Complemental strand, 39118121 - 39118049
Alignment:
Q  569 gattcattgcatagatgatgtatttgatctatattctagacaagatacaccaattactcattgaatctaaaaa 641  Q
    |||| |||| ||| || ||||||||| ||||||||||||| |||||| | |||||||||| || |||||||||    
T  39118121 gatttattgtataaattatgtatttggtctatattctagataagatatatcaattactcaatggatctaaaaa 39118049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 526 - 646
Target Start/End: Complemental strand, 45571179 - 45571060
Alignment:
Q  526 atactcgctccggtcctatttataagaaatatttgannnnnnngattcattgcatagatgatgtatttgatctatattctagacaagatacaccaattac 625  Q
    |||||| |||||||||||| ||||||||| | || |       ||||||||| |||| ||||||||||| ||||| |||||| | || |||| ||||||     
T  45571179 atactccctccggtcctatatataagaaacaatttacttttttgattcattgaatagttgatgtatttggtctat-ttctaggctaggtacatcaattat 45571081  T
Q  626 tcattgaatctaaaaagttaa 646  Q
    | | |||||||||||||||||    
T  45571080 tgaatgaatctaaaaagttaa 45571060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 526 - 646
Target Start/End: Complemental strand, 45574846 - 45574727
Alignment:
Q  526 atactcgctccggtcctatttataagaaatatttgannnnnnngattcattgcatagatgatgtatttgatctatattctagacaagatacaccaattac 625  Q
    |||||| |||||||||||| ||||||||| | || |       ||||||||| |||| ||||||||||| ||||| |||||| | || |||| ||||||     
T  45574846 atactccctccggtcctatatataagaaacaatttacttttttgattcattgaatagttgatgtatttggtctat-ttctaggctaggtacatcaattat 45574748  T
Q  626 tcattgaatctaaaaagttaa 646  Q
    | | |||||||||||||||||    
T  45574747 tgaatgaatctaaaaagttaa 45574727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #27
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 526 - 646
Target Start/End: Complemental strand, 45578513 - 45578394
Alignment:
Q  526 atactcgctccggtcctatttataagaaatatttgannnnnnngattcattgcatagatgatgtatttgatctatattctagacaagatacaccaattac 625  Q
    |||||| |||||||||||| ||||||||| | || |       ||||||||| |||| ||||||||||| ||||| |||||| | || |||| ||||||     
T  45578513 atactccctccggtcctatatataagaaacaatttacttttttgattcattgaatagttgatgtatttggtctat-ttctaggctaggtacatcaattat 45578415  T
Q  626 tcattgaatctaaaaagttaa 646  Q
    | | |||||||||||||||||    
T  45578414 tgaatgaatctaaaaagttaa 45578394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #28
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 526 - 646
Target Start/End: Complemental strand, 45582180 - 45582061
Alignment:
Q  526 atactcgctccggtcctatttataagaaatatttgannnnnnngattcattgcatagatgatgtatttgatctatattctagacaagatacaccaattac 625  Q
    |||||| |||||||||||| ||||||||| | || |       ||||||||| |||| ||||||||||| ||||| |||||| | || |||| ||||||     
T  45582180 atactccctccggtcctatatataagaaacaatttacttttttgattcattgaatagttgatgtatttggtctat-ttctaggctaggtacatcaattat 45582082  T
Q  626 tcattgaatctaaaaagttaa 646  Q
    | | |||||||||||||||||    
T  45582081 tgaatgaatctaaaaagttaa 45582061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #29
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 526 - 646
Target Start/End: Complemental strand, 45585847 - 45585728
Alignment:
Q  526 atactcgctccggtcctatttataagaaatatttgannnnnnngattcattgcatagatgatgtatttgatctatattctagacaagatacaccaattac 625  Q
    |||||| |||||||||||| ||||||||| | || |       ||||||||| |||| ||||||||||| ||||| |||||| | || |||| ||||||     
T  45585847 atactccctccggtcctatatataagaaacaatttacttttttgattcattgaatagttgatgtatttggtctat-ttctaggctaggtacatcaattat 45585749  T
Q  626 tcattgaatctaaaaagttaa 646  Q
    | | |||||||||||||||||    
T  45585748 tgaatgaatctaaaaagttaa 45585728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #30
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 526 - 646
Target Start/End: Complemental strand, 45589514 - 45589395
Alignment:
Q  526 atactcgctccggtcctatttataagaaatatttgannnnnnngattcattgcatagatgatgtatttgatctatattctagacaagatacaccaattac 625  Q
    |||||| |||||||||||| ||||||||| | || |       ||||||||| |||| ||||||||||| ||||| |||||| | || |||| ||||||     
T  45589514 atactccctccggtcctatatataagaaacaatttacttttttgattcattgaatagttgatgtatttggtctat-ttctaggctaggtacatcaattat 45589416  T
Q  626 tcattgaatctaaaaagttaa 646  Q
    | | |||||||||||||||||    
T  45589415 tgaatgaatctaaaaagttaa 45589395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #31
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 526 - 646
Target Start/End: Complemental strand, 45593181 - 45593062
Alignment:
Q  526 atactcgctccggtcctatttataagaaatatttgannnnnnngattcattgcatagatgatgtatttgatctatattctagacaagatacaccaattac 625  Q
    |||||| |||||||||||| ||||||||| | || |       ||||||||| |||| ||||||||||| ||||| |||||| | || |||| ||||||     
T  45593181 atactccctccggtcctatatataagaaacaatttacttttttgattcattgaatagttgatgtatttggtctat-ttctaggctaggtacatcaattat 45593083  T
Q  626 tcattgaatctaaaaagttaa 646  Q
    | | |||||||||||||||||    
T  45593082 tgaatgaatctaaaaagttaa 45593062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #32
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 526 - 646
Target Start/End: Complemental strand, 45596848 - 45596729
Alignment:
Q  526 atactcgctccggtcctatttataagaaatatttgannnnnnngattcattgcatagatgatgtatttgatctatattctagacaagatacaccaattac 625  Q
    |||||| |||||||||||| ||||||||| | || |       ||||||||| |||| ||||||||||| ||||| |||||| | || |||| ||||||     
T  45596848 atactccctccggtcctatatataagaaacaatttacttttttgattcattgaatagttgatgtatttggtctat-ttctaggctaggtacatcaattat 45596750  T
Q  626 tcattgaatctaaaaagttaa 646  Q
    | | |||||||||||||||||    
T  45596749 tgaatgaatctaaaaagttaa 45596729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #33
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 526 - 646
Target Start/End: Complemental strand, 45600515 - 45600396
Alignment:
Q  526 atactcgctccggtcctatttataagaaatatttgannnnnnngattcattgcatagatgatgtatttgatctatattctagacaagatacaccaattac 625  Q
    |||||| |||||||||||| ||||||||| | || |       ||||||||| |||| ||||||||||| ||||| |||||| | || |||| ||||||     
T  45600515 atactccctccggtcctatatataagaaacaatttacttttttgattcattgaatagttgatgtatttggtctat-ttctaggctaggtacatcaattat 45600417  T
Q  626 tcattgaatctaaaaagttaa 646  Q
    | | |||||||||||||||||    
T  45600416 tgaatgaatctaaaaagttaa 45600396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #34
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 526 - 646
Target Start/End: Complemental strand, 45604182 - 45604063
Alignment:
Q  526 atactcgctccggtcctatttataagaaatatttgannnnnnngattcattgcatagatgatgtatttgatctatattctagacaagatacaccaattac 625  Q
    |||||| |||||||||||| ||||||||| | || |       ||||||||| |||| ||||||||||| ||||| |||||| | || |||| ||||||     
T  45604182 atactccctccggtcctatatataagaaacaatttacttttttgattcattgaatagttgatgtatttggtctat-ttctaggctaggtacatcaattat 45604084  T
Q  626 tcattgaatctaaaaagttaa 646  Q
    | | |||||||||||||||||    
T  45604083 tgaatgaatctaaaaagttaa 45604063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #35
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 526 - 646
Target Start/End: Complemental strand, 45607849 - 45607730
Alignment:
Q  526 atactcgctccggtcctatttataagaaatatttgannnnnnngattcattgcatagatgatgtatttgatctatattctagacaagatacaccaattac 625  Q
    |||||| |||||||||||| ||||||||| | || |       ||||||||| |||| ||||||||||| ||||| |||||| | || |||| ||||||     
T  45607849 atactccctccggtcctatatataagaaacaatttacttttttgattcattgaatagttgatgtatttggtctat-ttctaggctaggtacatcaattat 45607751  T
Q  626 tcattgaatctaaaaagttaa 646  Q
    | | |||||||||||||||||    
T  45607750 tgaatgaatctaaaaagttaa 45607730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #36
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 526 - 646
Target Start/End: Complemental strand, 45611516 - 45611397
Alignment:
Q  526 atactcgctccggtcctatttataagaaatatttgannnnnnngattcattgcatagatgatgtatttgatctatattctagacaagatacaccaattac 625  Q
    |||||| |||||||||||| ||||||||| | || |       ||||||||| |||| ||||||||||| ||||| |||||| | || |||| ||||||     
T  45611516 atactccctccggtcctatatataagaaacaatttacttttttgattcattgaatagttgatgtatttggtctat-ttctaggctaggtacatcaattat 45611418  T
Q  626 tcattgaatctaaaaagttaa 646  Q
    | | |||||||||||||||||    
T  45611417 tgaatgaatctaaaaagttaa 45611397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #37
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 526 - 646
Target Start/End: Complemental strand, 45615183 - 45615064
Alignment:
Q  526 atactcgctccggtcctatttataagaaatatttgannnnnnngattcattgcatagatgatgtatttgatctatattctagacaagatacaccaattac 625  Q
    |||||| |||||||||||| ||||||||| | || |       ||||||||| |||| ||||||||||| ||||| |||||| | || |||| ||||||     
T  45615183 atactccctccggtcctatatataagaaacaatttacttttttgattcattgaatagttgatgtatttggtctat-ttctaggctaggtacatcaattat 45615085  T
Q  626 tcattgaatctaaaaagttaa 646  Q
    | | |||||||||||||||||    
T  45615084 tgaatgaatctaaaaagttaa 45615064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #38
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 569 - 603
Target Start/End: Original strand, 5281219 - 5281253
Alignment:
Q  569 gattcattgcatagatgatgtatttgatctatatt 603  Q
    ||||||||||||| |||||||||||||||||||||    
T  5281219 gattcattgcataaatgatgtatttgatctatatt 5281253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #39
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 571 - 641
Target Start/End: Original strand, 34447546 - 34447616
Alignment:
Q  571 ttcattgcatagatgatgtatttgatctatattctagacaagatacaccaattactcattgaatctaaaaa 641  Q
    ||||||||||| || ||||||||| | |||||| |||||||||||||   ||||| || ||||||||||||    
T  34447546 ttcattgcataaataatgtatttggtttatattttagacaagatacattgattacacaatgaatctaaaaa 34447616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #40
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 147 - 180
Target Start/End: Original strand, 1498878 - 1498911
Alignment:
Q  147 gtgtatttgtttcaagtttaccaaatttattcat 180  Q
    |||| |||||||||||||||||||||||||||||    
T  1498878 gtgtgtttgtttcaagtttaccaaatttattcat 1498911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #41
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 539 - 641
Target Start/End: Complemental strand, 2936430 - 2936328
Alignment:
Q  539 tcctatttataagaaatatttgannnnnnngattcattgcatagatgatgtatttgatctatattctagacaagatacaccaattactcattgaatctaa 638  Q
    |||||||||||||||| ||||||       ||||||||| ||||||||| |||||  ||||||||||| || |  ||||  ||||||||| ||||||| |    
T  2936430 tcctatttataagaaacatttgacttttttgattcattggatagatgatatatttagtctatattctataccaagtacattaattactcaatgaatctca 2936331  T
Q  639 aaa 641  Q
    |||    
T  2936330 aaa 2936328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #42
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 147 - 180
Target Start/End: Original strand, 11071330 - 11071363
Alignment:
Q  147 gtgtatttgtttcaagtttaccaaatttattcat 180  Q
    |||| |||||||||||||||||||||||||||||    
T  11071330 gtgtgtttgtttcaagtttaccaaatttattcat 11071363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #43
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 569 - 646
Target Start/End: Original strand, 11182206 - 11182283
Alignment:
Q  569 gattcattgcatagatgatgtatttgatctatattctagacaagatacaccaattactcattgaatctaaaaagttaa 646  Q
    |||||||| |||| ||||||||||||||  |||||||| |  | ||||| |||||||||| | ||| |||||||||||    
T  11182206 gattcattccataaatgatgtatttgattcatattctatatcatatacatcaattactcaataaatttaaaaagttaa 11182283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #44
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 541 - 643
Target Start/End: Original strand, 28248946 - 28249048
Alignment:
Q  541 ctatttataagaaatatttgannnnnnngattcattgcatagatgatgtatttgatctatattctagacaagatacaccaattactcattgaatctaaaa 640  Q
    |||||||||||||||||||||       |||| |||||||| || ||||||||  ||||||||||| || | |||||  ||||| | | |||||||||||    
T  28248946 ctatttataagaaatatttgacttttttgattaattgcataaataatgtatttagtctatattctataccaaatacattaattatttaatgaatctaaaa 28249045  T
Q  641 agt 643  Q
    |||    
T  28249046 agt 28249048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #45
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 147 - 180
Target Start/End: Complemental strand, 28312042 - 28312009
Alignment:
Q  147 gtgtatttgtttcaagtttaccaaatttattcat 180  Q
    |||| |||||||||||||||||||||||||||||    
T  28312042 gtgtgtttgtttcaagtttaccaaatttattcat 28312009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #46
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 570 - 643
Target Start/End: Original strand, 29169878 - 29169950
Alignment:
Q  570 attcattgcatagatgatgtatttgatctatattctagacaagatacaccaattactcattgaatctaaaaagt 643  Q
    ||||||||  || |||||||||||||||||||||||| |||| ||| | |||||||||| | ||| ||||||||    
T  29169878 attcattgtctaaatgatgtatttgatctatattctaaacaa-atatatcaattactcaataaatttaaaaagt 29169950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #47
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 536 - 614
Target Start/End: Complemental strand, 32487130 - 32487052
Alignment:
Q  536 cggtcctatttataagaaatatttgannnnnnngattcattgcatagatgatgtatttgatctatattctagacaagat 614  Q
    |||||| ||||||||||| |||||||       ||||||||||||| || ||||||||| |||||||  ||||||||||    
T  32487130 cggtcccatttataagaagtatttgacttttttgattcattgcataaataatgtatttggtctatatcgtagacaagat 32487052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #48
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 141 - 178
Target Start/End: Complemental strand, 41729482 - 41729445
Alignment:
Q  141 catagagtgtatttgtttcaagtttaccaaatttattc 178  Q
    ||||| |||| |||||||||||||||||||||||||||    
T  41729482 catagggtgtgtttgtttcaagtttaccaaatttattc 41729445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 60; Significance: 4e-25; HSPs: 19)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 60; E-Value: 4e-25
Query Start/End: Original strand, 524 - 640
Target Start/End: Complemental strand, 8793871 - 8793755
Alignment:
Q  524 taatactcgctccggtcctatttataagaaatatttgannnnnnngattcattgcatagatgatgtatttgatctatattctagacaagatacaccaatt 623  Q
    |||||||| |||||||||||||||||||||||||||||       ||||||||||||| |||||||||||  |||||||| ||||| | ||||| |||||    
T  8793871 taatactctctccggtcctatttataagaaatatttgacttttttgattcattgcataaatgatgtatttagtctatattatagaccaaatacatcaatt 8793772  T
Q  624 actcattgaatctaaaa 640  Q
    ||||| |||||||||||    
T  8793771 actcaatgaatctaaaa 8793755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 59; E-Value: 2e-24
Query Start/End: Original strand, 524 - 647
Target Start/End: Complemental strand, 5031616 - 5031493
Alignment:
Q  524 taatactcgctccggtcctatttataagaaatatttgannnnnnngattcattgcatagatgatgtatttgatctatattctagacaagatacaccaatt 623  Q
    |||||||| || || |||||||||||||||| ||||||       ||||||||||||| |||||||||||  |||||||||||||||||||||| |||||    
T  5031616 taatactctcttcgctcctatttataagaaacatttgacttttttgattcattgcataaatgatgtatttagtctatattctagacaagatacatcaatt 5031517  T
Q  624 actcattgaatctaaaaagttaaa 647  Q
    ||| | ||||| ||||||||||||    
T  5031516 acttaatgaatttaaaaagttaaa 5031493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 58; E-Value: 6e-24
Query Start/End: Original strand, 533 - 647
Target Start/End: Original strand, 16448794 - 16448908
Alignment:
Q  533 ctccggtcctatttataagaaatatttgannnnnnngattcattgcatagatgatgtatttgatctatattctagacaagatacaccaattactcattga 632  Q
    |||||||||||||||||||||| ||||||       ||||||||||||| ||||| |||||| | ||||||||| | |||||||| |||||||||| |||    
T  16448794 ctccggtcctatttataagaaacatttgacttttttgattcattgcataaatgatatatttggtttatattctatataagatacatcaattactcaatga 16448893  T
Q  633 atctaaaaagttaaa 647  Q
    |||||||||||||||    
T  16448894 atctaaaaagttaaa 16448908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 58; E-Value: 6e-24
Query Start/End: Original strand, 525 - 643
Target Start/End: Original strand, 42122963 - 42123081
Alignment:
Q  525 aatactcgctccggtcctatttataagaaatatttgannnnnnngattcattgcatagatgatgtatttgatctatattctagacaagatacaccaatta 624  Q
    ||||||| |||| |||||||||||||||||  |||||       ||||||||||||| |||||||||||| | ||||||||||||||||||||  |||||    
T  42122963 aatactccctccagtcctatttataagaaacgtttgacttttttgattcattgcataaatgatgtatttggtatatattctagacaagatacattaatta 42123062  T
Q  625 ctcattgaatctaaaaagt 643  Q
    |||| ||||||||||||||    
T  42123063 ctcaatgaatctaaaaagt 42123081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 51; E-Value: 1e-19
Query Start/End: Original strand, 526 - 641
Target Start/End: Original strand, 35149666 - 35149781
Alignment:
Q  526 atactcgctccggtcctatttataagaaatatttgannnnnnngattcattgcatagatgatgtatttgatctatattctagacaagatacaccaattac 625  Q
    |||||| | |||||||||||||||||||| ||||||       |||| |||||||| |||||||||||| ||||||||||||||||||||||  ||||||    
T  35149666 atactctccccggtcctatttataagaaacatttgacttttttgattaattgcataaatgatgtatttggtctatattctagacaagatacattaattac 35149765  T
Q  626 tcattgaatctaaaaa 641  Q
     || | ||||||||||    
T  35149766 acaataaatctaaaaa 35149781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 43; E-Value: 0.000000000000006
Query Start/End: Original strand, 523 - 646
Target Start/End: Complemental strand, 8803381 - 8803258
Alignment:
Q  523 ttaatactcgctccggtcctatttataagaaatatttgannnnnnngattcattgcatagatgatgtatttgatctatattctagacaagatacaccaat 622  Q
    ||||||||  ||||| |||||||||||| |||||||| |       |||||||| |||| |||||||||||| ||||||||||||||||||||||  |||    
T  8803381 ttaatacttcctccgatcctatttataaaaaatatttaacttttttgattcattacataaatgatgtatttggtctatattctagacaagatacattaat 8803282  T
Q  623 tactcattgaatctaaaaagttaa 646  Q
    |||  | | ||| |||||||||||    
T  8803281 tacataataaatataaaaagttaa 8803258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 43; E-Value: 0.000000000000006
Query Start/End: Original strand, 533 - 628
Target Start/End: Original strand, 40483288 - 40483383
Alignment:
Q  533 ctccggtcctatttataagaaatatttgannnnnnngattcattgcatagatgatgtatttgatctatattctagacaagatacaccaattactca 628  Q
    ||||||||||||||||||||||||||| |        |||||||||||| |||||||||||| || |||||||||| |||||| | ||||||||||    
T  40483288 ctccggtcctatttataagaaatatttaacttttttaattcattgcataaatgatgtatttggtccatattctagataagatatatcaattactca 40483383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 527 - 643
Target Start/End: Complemental strand, 3236479 - 3236363
Alignment:
Q  527 tactcgctccggtcctatttataagaaatatttgannnnnnngattcattgcatagatgatgtatttgatctatattctagacaagatacaccaattact 626  Q
    ||||| |||||||| ||||||||||||||||||||        |||||||| ||| |||||||||||| |||| ||| || || ||||||| |||||| |    
T  3236479 tactccctccggtcatatttataagaaatatttgacttttttaattcattgtataaatgatgtatttggtctaaattttaaactagatacatcaattatt 3236380  T
Q  627 cattgaatctaaaaagt 643  Q
    || ||||| ||||||||    
T  3236379 caatgaatttaaaaagt 3236363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 524 - 643
Target Start/End: Original strand, 7693029 - 7693148
Alignment:
Q  524 taatactcgctccggtcctatttataagaaatatttgannnnnnngattcattgcatagatgatgtatttgatctatattctagacaagatacaccaatt 623  Q
    |||||||| ||||  |||||||||||||||| |||| |       ||||||||||||| |||||||||||  |||||||| || || | |||||  ||||    
T  7693029 taatactccctccaatcctatttataagaaacattttacttttttgattcattgcataaatgatgtatttagtctatattttataccaaatacattaatt 7693128  T
Q  624 actcattgaatctaaaaagt 643  Q
    ||||| ||||||||||||||    
T  7693129 actcaatgaatctaaaaagt 7693148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 534 - 641
Target Start/End: Original strand, 8453601 - 8453707
Alignment:
Q  534 tccggtcctatttataagaaatatttgannnnnnngattcattgcatagatgatgtatttgatctatattctagacaagatacaccaattactcattgaa 633  Q
    |||||| ||||||||| |||| ||||||       |||||||| |||| || |||||||| ||||||||||||||||||||| | |||||||||| || |    
T  8453601 tccggttctatttataggaaacatttgaattttttgattcattacataaataatgtattt-atctatattctagacaagatatatcaattactcaatgta 8453699  T
Q  634 tctaaaaa 641  Q
    ||||||||    
T  8453700 tctaaaaa 8453707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 570 - 643
Target Start/End: Complemental strand, 1223229 - 1223156
Alignment:
Q  570 attcattgcatagatgatgtatttgatctatattctagacaagatacaccaattactcattgaatctaaaaagt 643  Q
    |||||||||||| || ||||||||| |||||||| | |||||||||||  |||||| || ||||||||||||||    
T  1223229 attcattgcataaattatgtatttggtctatatttttgacaagatacattaattacacaatgaatctaaaaagt 1223156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 534 - 643
Target Start/End: Complemental strand, 10839904 - 10839796
Alignment:
Q  534 tccggtcctatttataagaaatatttgannnnnnngattcattgcatagatgatgtatttgatctatattctagacaagatacaccaattactcattgaa 633  Q
    ||||||||||||||||||||| |||| |       ||||||||||||| |||||||||||| ||||||||||| || |  ||||  ||||| ||| ||||    
T  10839904 tccggtcctatttataagaaacattt-aactttttgattcattgcataaatgatgtatttggtctatattctataccaagtacattaattattcaatgaa 10839806  T
Q  634 tctaaaaagt 643  Q
    ||||||||||    
T  10839805 tctaaaaagt 10839796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 527 - 643
Target Start/End: Complemental strand, 43332710 - 43332593
Alignment:
Q  527 tactcgctccggtcctatttataagaaatatttgannnnnnngattcattgcatagatgatgtatttga-tctatattctagacaagatacaccaattac 625  Q
    ||||| |||| ||||||||||||| ||||||||||       ||||||||||||| ||||||| |||   |||  ||||||||||||||| |  ||||||    
T  43332710 tactccctccagtcctatttataaaaaatatttgatttttttgattcattgcataaatgatgtttttttgtcttcattctagacaagatatattaattac 43332611  T
Q  626 tcattgaatctaaaaagt 643  Q
    ||| ||||||||||||||    
T  43332610 tcaatgaatctaaaaagt 43332593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 533 - 640
Target Start/End: Original strand, 24618963 - 24619070
Alignment:
Q  533 ctccggtcctatttataagaaatatttgannnnnnngattcattgcatagatgatgtatttgatctatattcta-gacaagatacaccaattactcattg 631  Q
    |||| |||||||||||||||||  |||||       ||||||||||||| |||||||||||| |||||||||||  ||||| ||||  ||||||||| ||    
T  24618963 ctccagtcctatttataagaaacctttgacttttttgattcattgcataaatgatgtatttggtctatattctataacaag-tacattaattactcaatg 24619061  T
Q  632 aatctaaaa 640  Q
    |||||||||    
T  24619062 aatctaaaa 24619070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 583 - 626
Target Start/End: Complemental strand, 30255826 - 30255783
Alignment:
Q  583 atgatgtatttgatctatattctagacaagatacaccaattact 626  Q
    |||||||||||||| |||||||||||||||||||| ||||||||    
T  30255826 atgatgtatttgatatatattctagacaagatacatcaattact 30255783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 569 - 643
Target Start/End: Complemental strand, 34711188 - 34711114
Alignment:
Q  569 gattcattgcatagatgatgtatttgatctatattctagacaagatacaccaattactcattgaatctaaaaagt 643  Q
    |||| |||||||  |||||||||||  | |||||| ||||||| ||||| |||||||||| ||||||||||||||    
T  34711188 gatttattgcattaatgatgtatttagtttatattttagacaaaatacatcaattactcaatgaatctaaaaagt 34711114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 570 - 643
Target Start/End: Original strand, 10184593 - 10184666
Alignment:
Q  570 attcattgcatagatgatgtatttgatctatattctagacaagatacaccaattactcattgaatctaaaaagt 643  Q
    |||||||| ||| |||||||||||| |||||||||| ||  | ||||| |||||| ||| ||||||||||||||    
T  10184593 attcattgtataaatgatgtatttggtctatattctggatcatatacatcaattattcaatgaatctaaaaagt 10184666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 574 - 643
Target Start/End: Original strand, 16008569 - 16008638
Alignment:
Q  574 attgcatagatgatgtatttgatctatattctagacaagatacaccaattactcattgaatctaaaaagt 643  Q
    |||||||| || ||||||||| || ||||||||||||| ||||| ||| |||||| | ||||||| ||||    
T  16008569 attgcataaataatgtatttggtcaatattctagacaaaatacatcaagtactcaataaatctaagaagt 16008638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 571 - 639
Target Start/End: Original strand, 36191790 - 36191856
Alignment:
Q  571 ttcattgcatagatgatgtatttgatctatattctagacaagatacaccaattactcattgaatctaaa 639  Q
    ||||||||||| ||||||||||||   |||||| || |||||||||| |||||| ||| ||||||||||    
T  36191790 ttcattgcataaatgatgtatttg--gtatattttatacaagatacatcaattattcaatgaatctaaa 36191856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 52; Significance: 2e-20; HSPs: 15)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 521 - 617
Target Start/End: Complemental strand, 9077741 - 9077645
Alignment:
Q  521 aattaatactcgctccggtcctatttataagaaatatttgannnnnnngattcattgcatagatgatgtatttgatctatattctagacaagataca 617  Q
    |||||||| || |||||||| ||||||||||||||||||||       ||||||||||||| |||||| ||||| ||||||||||||||||||||||    
T  9077741 aattaatattccctccggtcttatttataagaaatatttgacttttttgattcattgcataaatgatgcatttggtctatattctagacaagataca 9077645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 49; E-Value: 2e-18
Query Start/End: Original strand, 536 - 641
Target Start/End: Complemental strand, 30627963 - 30627858
Alignment:
Q  536 cggtcctatttataagaaatatttgannnnnnngattcattgcatagatgatgtatttgatctatattctagacaagatacaccaattactcattgaatc 635  Q
    |||| |||||||||||||| ||||||       ||||||||||||| |||||||||||| |||||||| ||||||||||||| |||||||||| | |||     
T  30627963 cggttctatttataagaaacatttgacttttctgattcattgcataaatgatgtatttggtctatattttagacaagatacatcaattactcaataaata 30627864  T
Q  636 taaaaa 641  Q
    ||||||    
T  30627863 taaaaa 30627858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 48; E-Value: 6e-18
Query Start/End: Original strand, 526 - 642
Target Start/End: Complemental strand, 3065033 - 3064917
Alignment:
Q  526 atactcgctccggtcctatttataagaaatatttgannnnnnngattcattgcatagatgatgtatttgatctatattctagacaagatacaccaattac 625  Q
    |||||| ||||||||||||||||||||||||||| |       ||||||||||||| ||| |||||||| |||||||| || ||||||||||  |||||     
T  3065033 atactccctccggtcctatttataagaaatattttacttttttgattcattgcataaatggtgtatttggtctatattttatacaagatacattaattat 3064934  T
Q  626 tcattgaatctaaaaag 642  Q
     || |||||||||||||    
T  3064933 acaatgaatctaaaaag 3064917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 48; E-Value: 6e-18
Query Start/End: Original strand, 525 - 641
Target Start/End: Original strand, 17265718 - 17265834
Alignment:
Q  525 aatactcgctccggtcctatttataagaaatatttgannnnnnngattcattgcatagatgatgtatttgatctatattctagacaagatacaccaatta 624  Q
    |||||||  |||| |||||||||||||||| ||||||       ||||||||||||| |||| ||||||  |||||||||||||||||||||| ||||||    
T  17265718 aatactccttccgatcctatttataagaaacatttgacttttttgattcattgcataaatgacgtatttagtctatattctagacaagatacatcaatta 17265817  T
Q  625 ctcattgaatctaaaaa 641  Q
    |||  ||||| ||||||    
T  17265818 ctcgatgaatttaaaaa 17265834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 569 - 643
Target Start/End: Complemental strand, 2972271 - 2972197
Alignment:
Q  569 gattcattgcatagatgatgtatttgatctatattctagacaagatacaccaattactcattgaatctaaaaagt 643  Q
    ||||||||||||| |||||||||||  |||||||| |||| ||||||||||||||||||| | ||||||||||||    
T  2972271 gattcattgcataaatgatgtattttgtctatattttagataagatacaccaattactcaataaatctaaaaagt 2972197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 46; E-Value: 9e-17
Query Start/End: Original strand, 525 - 647
Target Start/End: Complemental strand, 12450502 - 12450380
Alignment:
Q  525 aatactcgctccggtcctatttataagaaatatttgannnnnnngattcattgcatagatgatgtatttgatctatattctagacaagatacaccaatta 624  Q
    ||||||| ||| | ||| |||||||||||||||||||        |||||||||||| ||||||||||| ||||||||| |||| || ||||| ||||||    
T  12450502 aatactctctctgatccaatttataagaaatatttgacttttttaattcattgcataaatgatgtatttaatctatattttagataaaatacatcaatta 12450403  T
Q  625 ctcattgaatctaaaaagttaaa 647  Q
     ||| |||||| |||||||||||    
T  12450402 ttcaatgaatccaaaaagttaaa 12450380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 45; E-Value: 4e-16
Query Start/End: Original strand, 538 - 643
Target Start/End: Complemental strand, 28630891 - 28630786
Alignment:
Q  538 gtcctatttataagaaatatttgannnnnnngattcattgcatagatgatgtatttgatctatattctagacaagatacaccaattactcattgaatcta 637  Q
    ||||||||||||||||| | ||||       ||||||||||||| || ||||||||| |||||||| ||||||||||||| |||||||||| |||||  |    
T  28630891 gtcctatttataagaaacaattgactttttagattcattgcataaattatgtatttggtctatattatagacaagatacatcaattactcaatgaataaa 28630792  T
Q  638 aaaagt 643  Q
    ||||||    
T  28630791 aaaagt 28630786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 43; E-Value: 0.000000000000006
Query Start/End: Original strand, 569 - 643
Target Start/End: Original strand, 2230390 - 2230464
Alignment:
Q  569 gattcattgcatagatgatgtatttgatctatattctagacaagatacaccaattactcattgaatctaaaaagt 643  Q
    ||||| ||| ||| |||||||| ||| ||||||||||||||||||||||  ||||||||| ||||||||||||||    
T  2230390 gattcgttgaataaatgatgtacttggtctatattctagacaagatacattaattactcaatgaatctaaaaagt 2230464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 41; E-Value: 0.00000000000009
Query Start/End: Original strand, 527 - 643
Target Start/End: Complemental strand, 27909124 - 27909007
Alignment:
Q  527 tactcgctccggtcctatttataagaaatatttgannnnnnngattcattgcatagatgatgtatttgatctatattctagacaagatacaccaattact 626  Q
    ||||| ||| ||||||||||| |||||| ||||||        |||||||| |||  |||||||||||||||||||| |||||  |||||| ||||||||    
T  27909124 tactccctctggtcctatttacaagaaacatttgacttttttaattcattgaataattgatgtatttgatctatattttagaccggatacatcaattact 27909025  T
Q  627 c-attgaatctaaaaagt 643  Q
    | ||||||||||||||||    
T  27909024 caattgaatctaaaaagt 27909007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 524 - 617
Target Start/End: Complemental strand, 28863472 - 28863379
Alignment:
Q  524 taatactcgctccggtcctatttataagaaatatttgannnnnnngattcattgcatagatgatgtatttgatctatattctagacaagataca 617  Q
    ||||||||  |||||| |||||||||||||| |||| |       |||| |||||||| |||||||||||| | ||||||||||||||||||||    
T  28863472 taatactccatccggttctatttataagaaacatttaaattctttgatttattgcataaatgatgtatttggtttatattctagacaagataca 28863379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 527 - 643
Target Start/End: Original strand, 33119903 - 33120017
Alignment:
Q  527 tactcgctccggtcctatttataagaaatatttgannnnnnngattcattgcatagatgatgtatttgatctatattctagacaagatacaccaattact 626  Q
    ||||| || ||||||||||||||||||| ||||||       ||||||||| ||| ||| |||||||| |||||||  | ||||||||||| | |||| |    
T  33119903 tactcccttcggtcctatttataagaaacatttgacttctttgattcattgtataaatgttgtatttggtctatat--ttgacaagatacatcgattatt 33120000  T
Q  627 cattgaatctaaaaagt 643  Q
    || ||||||||||||||    
T  33120001 caatgaatctaaaaagt 33120017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 569 - 641
Target Start/End: Original strand, 12999796 - 12999868
Alignment:
Q  569 gattcattgcatagatgatgtatttgatctatattctagacaagatacaccaattactcattgaatctaaaaa 641  Q
    ||||||||||||| | |||||||||||||||||||||| || |  ||||  ||||||||| ||||||| ||||    
T  12999796 gattcattgcataaaagatgtatttgatctatattctataccaagtacattaattactcaatgaatctgaaaa 12999868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 521 - 606
Target Start/End: Complemental strand, 30895339 - 30895254
Alignment:
Q  521 aattaatactcgctccggtcctatttataagaaatatttgannnnnnngattcattgcatagatgatgtatttgatctatattcta 606  Q
    |||||||||||  ||| ||| ||||||||||||| ||||||       ||||||||||||| ||||| |||||| |||||||||||    
T  30895339 aattaatactccatccagtcttatttataagaaacatttgacttttttgattcattgcataaatgatatatttggtctatattcta 30895254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 542 - 646
Target Start/End: Original strand, 10283308 - 10283412
Alignment:
Q  542 tatttataagaaatatttgannnnnnngattcattgcatagatgatgtatttgatctatattctagacaagatacaccaattactcattgaatctaaaaa 641  Q
    ||||||||| ||||||||||       ||||||| | ||| |||||||||||||| |||||| ||||||  ||||| |||||||||| | ||| ||||||    
T  10283308 tatttataaaaaatatttgacttttttgattcatggtataaatgatgtatttgatatatattttagacagtatacatcaattactcaataaatttaaaaa 10283407  T
Q  642 gttaa 646  Q
     ||||    
T  10283408 attaa 10283412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 141 - 178
Target Start/End: Original strand, 1316738 - 1316775
Alignment:
Q  141 catagagtgtatttgtttcaagtttaccaaatttattc 178  Q
    ||||| |||| |||||||||||||||||||||||||||    
T  1316738 catagggtgtgtttgtttcaagtttaccaaatttattc 1316775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 52; Significance: 2e-20; HSPs: 24)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 527 - 643
Target Start/End: Complemental strand, 54537592 - 54537476
Alignment:
Q  527 tactcgctccggtcctatttataagaaatatttgannnnnnngattcattgcatagatgatgtatttgatctatattctagacaagatacaccaattact 626  Q
    ||||| || ||||||||||||||||||||  ||||       ||||||||||||| ||  ||||||||||||||||||||||| ||||||| ||||||||    
T  54537592 tactcccttcggtcctatttataagaaattattgacttttttgattcattgcataaattgtgtatttgatctatattctagactagatacatcaattact 54537493  T
Q  627 cattgaatctaaaaagt 643  Q
    || ||||||| ||||||    
T  54537492 caatgaatcttaaaagt 54537476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 48; E-Value: 6e-18
Query Start/End: Original strand, 527 - 647
Target Start/End: Complemental strand, 52865100 - 52864980
Alignment:
Q  527 tactcgctccggtcctatttataagaaatatttgannnnnnngattcattgcatagatgatgtatttgatctatattctagacaagatacaccaattact 626  Q
    ||||| ||||||  |||||||||| ||||| ||||       ||||||||||||| ||||| |||||  |||||||| |||| |||||||| ||||||||    
T  52865100 tactccctccggcgctatttataaaaaataattgacttttttgattcattgcataaatgatatatttagtctatattttagataagatacatcaattact 52865001  T
Q  627 cattgaatctaaaaagttaaa 647  Q
    || ||||||||||||||||||    
T  52865000 caatgaatctaaaaagttaaa 52864980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 45; E-Value: 4e-16
Query Start/End: Original strand, 538 - 643
Target Start/End: Complemental strand, 44518174 - 44518069
Alignment:
Q  538 gtcctatttataagaaatatttgannnnnnngattcattgcatagatgatgtatttgatctatattctagacaagatacaccaattactcattgaatcta 637  Q
    |||||||||||||||||  |||||       |||||||||  || |||||||||||| |||||||| |||||||||||||  ||||||||| ||||||||    
T  44518174 gtcctatttataagaaaactttgacttttttgattcattgtctaaatgatgtatttggtctatattttagacaagatacattaattactcaatgaatcta 44518075  T
Q  638 aaaagt 643  Q
    ||||||    
T  44518074 aaaagt 44518069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 43; E-Value: 0.000000000000006
Query Start/End: Original strand, 525 - 647
Target Start/End: Complemental strand, 8266382 - 8266262
Alignment:
Q  525 aatactcgctccggtcctatttataagaaatatttgannnnnnngattcattgcatagatgatgtatttgatctatattctagacaagatacaccaatta 624  Q
    ||||||| |||||||||||||||||||||| ||||||       ||||||||| ||| || |||| ||||   |||||| |||| || ||||| ||||||    
T  8266382 aatactccctccggtcctatttataagaaacatttgacttttttgattcattgtataaataatgtgtttg--gtatattttagataaaatacatcaatta 8266285  T
Q  625 ctcattgaatctaaaaagttaaa 647  Q
    |||| ||||||||||||||||||    
T  8266284 ctcaatgaatctaaaaagttaaa 8266262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 43; E-Value: 0.000000000000006
Query Start/End: Original strand, 526 - 641
Target Start/End: Complemental strand, 43449108 - 43448993
Alignment:
Q  526 atactcgctccggtcctatttataagaaatatttgannnnnnngattcattgcatagatgatgtatttgatctatattctagacaagatacaccaattac 625  Q
    |||||| || || |||||||||||||||||||||||       | ||||||| ||| |||||||||||| | |||||  ||||||||||| | |||||||    
T  43449108 atactcccttcgatcctatttataagaaatatttgatttttttggttcattgtataaatgatgtatttggtttatatcatagacaagatatatcaattac 43449009  T
Q  626 tcattgaatctaaaaa 641  Q
    ||| ||||||||||||    
T  43449008 tcaatgaatctaaaaa 43448993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 527 - 643
Target Start/End: Complemental strand, 21663035 - 21662919
Alignment:
Q  527 tactcgctccggtcctatttataagaaatatttgannnnnnngattcattgcatagatgatgtatttgatctatattctagacaagatacaccaattact 626  Q
    ||||| |||||||| ||||||||||||| |||| |       ||||||||||||| |||||||||||| |||||| |||| || |  ||||  |||||||    
T  21663035 tactccctccggtcttatttataagaaacatttaacttttttgattcattgcataaatgatgtatttggtctataatctataccaagtacattaattact 21662936  T
Q  627 cattgaatctaaaaagt 643  Q
    || ||||||||||||||    
T  21662935 caatgaatctaaaaagt 21662919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 570 - 641
Target Start/End: Original strand, 25954064 - 25954135
Alignment:
Q  570 attcattgcatagatgatgtatttgatctatattctagacaagatacaccaattactcattgaatctaaaaa 641  Q
    |||||||  ||| ||||| |||||||||||||||||||||||||||||  ||||||||| ||||| ||||||    
T  25954064 attcattatataaatgatatatttgatctatattctagacaagatacattaattactcaatgaatttaaaaa 25954135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 583 - 641
Target Start/End: Original strand, 23223013 - 23223071
Alignment:
Q  583 atgatgtatttgatctatattctagacaagatacaccaattactcattgaatctaaaaa 641  Q
    |||||||||||| |||||||| ||||||||||||| || ||||||| ||||||||||||    
T  23223013 atgatgtatttggtctatattttagacaagatacatcagttactcaatgaatctaaaaa 23223071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 524 - 646
Target Start/End: Original strand, 45010746 - 45010868
Alignment:
Q  524 taatactcgctccggtcctatttataagaaatatttgannnnnnngattcattgcatagatgatgtatttgatctatattctagacaagatacaccaatt 623  Q
    |||||||| |||  ||||||||||||||||||||||||       |||| |||| ||| ||||||| | || ||||||||||| || ||||||| |||||    
T  45010746 taatactccctctagtcctatttataagaaatatttgacttttttgatttattgtataaatgatgtttgtggtctatattctaaactagatacatcaatt 45010845  T
Q  624 actcattgaatctaaaaagttaa 646  Q
    | ||| | |||||||||| ||||    
T  45010846 attcaataaatctaaaaaattaa 45010868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 574 - 643
Target Start/End: Original strand, 53357334 - 53357404
Alignment:
Q  574 attgcatagatgatgtatttgatctatattctagacaagatacaccaattact-cattgaatctaaaaagt 643  Q
    |||||||| ||||| |||||| |||||||||||||||||||| | |||||||| || | ||||||||||||    
T  53357334 attgcataaatgatatatttggtctatattctagacaagatagatcaattactccaataaatctaaaaagt 53357404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 541 - 611
Target Start/End: Original strand, 9197094 - 9197164
Alignment:
Q  541 ctatttataagaaatatttgannnnnnngattcattgcatagatgatgtatttgatctatattctagacaa 611  Q
    |||||||||||||||||||||       ||||||||||||| |||||||||||  ||||||||||| ||||    
T  9197094 ctatttataagaaatatttgacttttttgattcattgcataaatgatgtattttgtctatattctaaacaa 9197164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 569 - 646
Target Start/End: Complemental strand, 9236194 - 9236117
Alignment:
Q  569 gattcattgcatagatgatgtatttgatctatattctagacaagatacaccaattactcattgaatctaaaaagttaa 646  Q
    |||||||| |||| ||||| |||||  ||||||||||| |  ||||||| |||||||||| |||||| ||||||||||    
T  9236194 gattcattacataaatgatatatttagtctatattctatatcagatacatcaattactcaatgaatcaaaaaagttaa 9236117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 569 - 641
Target Start/End: Original strand, 12747738 - 12747810
Alignment:
Q  569 gattcattgcatagatgatgtatttgatctatattctagacaagatacaccaattactcattgaatctaaaaa 641  Q
    ||||||||||||| ||  |||||||| | |||||||||||| | ||||| |||||||||  ||||||||||||    
T  12747738 gattcattgcataaattgtgtatttggtgtatattctagaccaaatacatcaattactcgatgaatctaaaaa 12747810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 571 - 643
Target Start/End: Original strand, 32711245 - 32711317
Alignment:
Q  571 ttcattgcatagatgatgtatttgatctatattctagacaagatacaccaattactcattgaatctaaaaagt 643  Q
    ||||||| |||  |||||||||||  ||||||| ||||| ||||||| |||||| ||| ||||||||||||||    
T  32711245 ttcattgaataattgatgtatttggcctatattatagaccagatacatcaattattcaatgaatctaaaaagt 32711317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 146 - 180
Target Start/End: Original strand, 24783933 - 24783967
Alignment:
Q  146 agtgtatttgtttcaagtttaccaaatttattcat 180  Q
    ||||| |||||||||||||||||||||||||||||    
T  24783933 agtgtgtttgtttcaagtttaccaaatttattcat 24783967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 527 - 561
Target Start/End: Complemental strand, 34988205 - 34988171
Alignment:
Q  527 tactcgctccggtcctatttataagaaatatttga 561  Q
    ||||| |||||||||||||||||||||||||||||    
T  34988205 tactccctccggtcctatttataagaaatatttga 34988171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 569 - 643
Target Start/End: Complemental strand, 48593249 - 48593175
Alignment:
Q  569 gattcattgcatagatgatgtatttgatctatattctagacaagatacaccaattactcattgaatctaaaaagt 643  Q
    ||||||||| |||  | ||||||||| ||||||||||||||  |||||| |||||| ||| || |||||||||||    
T  48593249 gattcattgaataatttatgtatttggtctatattctagacccgatacatcaattattcaatgtatctaaaaagt 48593175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 147 - 180
Target Start/End: Original strand, 24574292 - 24574325
Alignment:
Q  147 gtgtatttgtttcaagtttaccaaatttattcat 180  Q
    |||| |||||||||||||||||||||||||||||    
T  24574292 gtgtgtttgtttcaagtttaccaaatttattcat 24574325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 569 - 646
Target Start/End: Original strand, 29457881 - 29457957
Alignment:
Q  569 gattcattgcatagatgatgtatttgatctatattctagacaagatacaccaattactcattgaatctaaaaagttaa 646  Q
    ||||||||| |||| ||||||||||| ||||| |||||||| || |||| |||| | | | |||||||||||||||||    
T  29457881 gattcattgaatagttgatgtatttggtctat-ttctagactaggtacatcaatcattgaatgaatctaaaaagttaa 29457957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 574 - 615
Target Start/End: Original strand, 35099101 - 35099142
Alignment:
Q  574 attgcatagatgatgtatttgatctatattctagacaagata 615  Q
    |||| ||| |||||||||||| ||||||||||||||||||||    
T  35099101 attgtataaatgatgtatttggtctatattctagacaagata 35099142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 543 - 617
Target Start/End: Complemental strand, 36985289 - 36985215
Alignment:
Q  543 atttataagaaatatttgannnnnnngattcattgcatagatgatgtatttgatctatattctagacaagataca 617  Q
    ||||||||||||| |||||       ||||||||||||| || ||||||||  ||||||||||| ||||||||||    
T  36985289 atttataagaaatttttgacttttttgattcattgcataaataatgtatttagtctatattctaaacaagataca 36985215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 543 - 617
Target Start/End: Complemental strand, 37010728 - 37010654
Alignment:
Q  543 atttataagaaatatttgannnnnnngattcattgcatagatgatgtatttgatctatattctagacaagataca 617  Q
    ||||||||||||| |||||       ||||||||||||| || ||||||||  ||||||||||| ||||||||||    
T  37010728 atttataagaaatttttgacttttttgattcattgcataaataatgtatttagtctatattctaaacaagataca 37010654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 574 - 646
Target Start/End: Complemental strand, 40460448 - 40460375
Alignment:
Q  574 attgcatagatgatgtatttgatctatattctagacaagataca-ccaattactcattgaatctaaaaagttaa 646  Q
    |||| ||| |||||||||||| |||||||| || ||||||||||   |||||| || |||||||||||||||||    
T  40460448 attgtataaatgatgtatttggtctatattttaaacaagatacatttaattacacaatgaatctaaaaagttaa 40460375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 525 - 587
Target Start/End: Complemental strand, 50354387 - 50354325
Alignment:
Q  525 aatactcgctccggtcctatttataagaaatatttgannnnnnngattcattgcatagatgat 587  Q
    ||||||| |||||||||||||||||| ||||||||||       ||||||||||||| |||||    
T  50354387 aatactctctccggtcctatttataaaaaatatttgatttttttgattcattgcataaatgat 50354325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0236 (Bit Score: 43; Significance: 0.000000000000006; HSPs: 1)
Name: scaffold0236
Description:

Target: scaffold0236; HSP #1
Raw Score: 43; E-Value: 0.000000000000006
Query Start/End: Original strand, 569 - 639
Target Start/End: Original strand, 16692 - 16762
Alignment:
Q  569 gattcattgcatagatgatgtatttgatctatattctagacaagatacaccaattactcattgaatctaaa 639  Q
    ||||||||||||| |  ||||||||| |||||||||||||||||||||| |||||||||| ||||| ||||    
T  16692 gattcattgcataaaatatgtatttggtctatattctagacaagatacatcaattactcaatgaatttaaa 16762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0123 (Bit Score: 40; Significance: 0.0000000000004; HSPs: 1)
Name: scaffold0123
Description:

Target: scaffold0123; HSP #1
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 569 - 624
Target Start/End: Original strand, 28130 - 28185
Alignment:
Q  569 gattcattgcatagatgatgtatttgatctatattctagacaagatacaccaatta 624  Q
    ||||||||||||| ||||||||||||||||||||| ||||||||||| | ||||||    
T  28130 gattcattgcataaatgatgtatttgatctatattttagacaagatatatcaatta 28185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0136 (Bit Score: 39; Significance: 0.000000000001; HSPs: 1)
Name: scaffold0136
Description:

Target: scaffold0136; HSP #1
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 569 - 647
Target Start/End: Complemental strand, 16636 - 16558
Alignment:
Q  569 gattcattgcatagatgatgtatttgatctatattctagacaagatacaccaattactcattgaatctaaaaagttaaa 647  Q
    ||||||||| ||| || ||||||||| |||||||||||| |||||| || |||||||||| |||||  |||||||||||    
T  16636 gattcattgtataaataatgtatttggtctatattctagtcaagatgcatcaattactcaatgaattaaaaaagttaaa 16558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0086 (Bit Score: 39; Significance: 0.000000000001; HSPs: 1)
Name: scaffold0086
Description:

Target: scaffold0086; HSP #1
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 576 - 626
Target Start/End: Complemental strand, 1537 - 1487
Alignment:
Q  576 tgcatagatgatgtatttgatctatattctagacaagatacaccaattact 626  Q
    |||||| ||||||||||||||||||||||||||||||||| | ||||||||    
T  1537 tgcataaatgatgtatttgatctatattctagacaagatatatcaattact 1487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0110 (Bit Score: 37; Significance: 0.00000000002; HSPs: 1)
Name: scaffold0110
Description:

Target: scaffold0110; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 533 - 646
Target Start/End: Original strand, 1538 - 1650
Alignment:
Q  533 ctccggtcctatttataagaaatatttgannnnnnngattcattgcatagatgatgtatttgatctatattctagacaagatacaccaattactcattga 632  Q
    |||||||||||||||||  ||| ||||||       ||||| ||||||| |||||| |||||||||||| ||||||| | ||||| |||||| ||| |||    
T  1538 ctccggtcctatttatataaaacatttgacttttttgattcgttgcataaatgatgcatttgatctatactctagacta-atacatcaattattcaatga 1636  T
Q  633 atctaaaaagttaa 646  Q
    ||||||||| ||||    
T  1637 atctaaaaaattaa 1650  T

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Target: scaffold0238 (Bit Score: 35; Significance: 0.0000000004; HSPs: 1)
Name: scaffold0238
Description:

Target: scaffold0238; HSP #1
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 571 - 641
Target Start/End: Complemental strand, 2609 - 2539
Alignment:
Q  571 ttcattgcatagatgatgtatttgatctatattctagacaagatacaccaattactcattgaatctaaaaa 641  Q
    ||||||||||| | |||||||||||||||||||||| |  | |||||  ||||||||| ||||||||||||    
T  2609 ttcattgcataaacgatgtatttgatctatattctatatcaaatacattaattactcaatgaatctaaaaa 2539  T

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