View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4974-Insertion-5 (Length: 893)
Name: NF4974-Insertion-5
Description: NF4974
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4974-Insertion-5 |
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Alignment Details
Target: chr4 (Bit Score: 782; Significance: 0; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 782; E-Value: 0
Query Start/End: Original strand, 6 - 887
Target Start/End: Original strand, 32229477 - 32230356
Alignment:
| Q |
6 |
cacagaaaactgtaggaaatgctgctgctggtgctcagaaaactgtgggaaatgctgcagctggtgttcataagactgtaggagattatgctaccacggc |
105 |
Q |
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| T |
32229477 |
cacagaaaactgtaggaaatgctgcttctggtgcccagaaaactttgggaaatgctgcagctggagttcataagactgtaggagattatgctaccacggc |
32229576 |
T |
|
| Q |
106 |
tgctaattatgtaaaacccaaaccagatcctattggcaaaaccaaaggtgcggttgatggtgctgcaaagtctgttggaggcttatttaaatgaacaata |
205 |
Q |
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| T |
32229577 |
tgctaattatgtaaaacccaaaccagatcctattggcaaaaccaaaggtgcggttgatggtgctgcaaagtctgttggaggcttatttaaatgaacaata |
32229676 |
T |
|
| Q |
206 |
tcgttgatttcactttaccaagtttgattaattaataaggacactaaacttgcattgccatcccttctaag--tattgtgtataagttagcactgtgtat |
303 |
Q |
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| T |
32229677 |
tcgttgatttcactttaccaagtttgattaattaataaggacactaaacttgc-----catcccttttaagagtattgtgtataagttagcactgtgtat |
32229771 |
T |
|
| Q |
304 |
cttatcatatagtctataggataggatatactaagttggatccaatatgtaaggtaatagagttatgctctttactttactgatcctgcctctgtttata |
403 |
Q |
| |
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||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
32229772 |
cttatcatataatctataggataggatatactaagttggatccaatatgtaaggtaacagagttatgctctttactttactgatcctgcctctgtttata |
32229871 |
T |
|
| Q |
404 |
tttttcttaattctgttgcatatatattattcaattctgtttcctttctcgtattttcttctcttttggctacgtcaaattttgtgctctttcaacatgt |
503 |
Q |
| |
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| T |
32229872 |
tttttcttaattctgttgcatatatattattcaattctgtttcctttctcgtattttcttctcttttggctaagtcaaattttgtgctctttcaacatgt |
32229971 |
T |
|
| Q |
504 |
gttaattaaattgagattaatttcgatacaccataagttgatatacaatagcaaataaaagtttgagaaacattaacagaattgtctaattgacattgtc |
603 |
Q |
| |
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| T |
32229972 |
gttaattaaattgagattaatttcgatacaccataagttgatatacaatagcaaataaaagtttgagaaacattaacagaattgtctaattgacattgtc |
32230071 |
T |
|
| Q |
604 |
atatgatattttataatttgcatatcttgaaactgattaagccttagaaaagaagaaaaaccaagtgtattttgtatactgcaactatacatgatgttca |
703 |
Q |
| |
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| T |
32230072 |
atatgatattttataatttgcatatcttgaaactgattgagccttagaaaagaagaaaaaccaagtgttttttgtatactgcaactatacatgatgttca |
32230171 |
T |
|
| Q |
704 |
tgtacatttcatagaacagtgaaacatataattacagaacttcgttttgttactaaaaccaaatgacatta-tgtacacatatatatacttattggtgtt |
802 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | | |||||||||||||||||||| || |
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| T |
32230172 |
tgtacatttcatagaacagtgaaacatataattacagaacttcgttttgttactaaaaccaaatgacattattatgtacatatatatacttattggtttt |
32230271 |
T |
|
| Q |
803 |
ctttctttcttagaagcaggaacaagcccctggaagctttcctgttgttctaataatgtttgccttatcttttgctttcagcgtt |
887 |
Q |
| |
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||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
32230272 |
ctttcattcttagaagcaggaacaagcccctggaagctttccagttgttctaataatgtttgccttatcttttgctttcagcgtt |
32230356 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 167; E-Value: 6e-89
Query Start/End: Original strand, 232 - 515
Target Start/End: Original strand, 32224858 - 32225138
Alignment:
| Q |
232 |
attaattaataaggacactaaacttgcattgccatcccttctaagtattgtgtataagttagcactgtgtatcttatcatatagtctataggataggata |
331 |
Q |
| |
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| T |
32224858 |
attaattaataaggatactaaacttgt-----catcccttc-aagtat-gtgtataagttagcactgtgtatcttatcatataaactataggataggata |
32224950 |
T |
|
| Q |
332 |
tactaagttggatccaatatgtaaggtaatagagttatgctctttactttactgatcctgcctc----tgtttatatttttcttaattctgttgcatata |
427 |
Q |
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||||||||||||||||||||||||||||| |||| | ||||||| ||||||||||||||||||| ||||||| |||||| |||||||||||||||| |
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| T |
32224951 |
tactaagttggatccaatatgtaaggtaacagagctctgctcttcactttactgatcctgcctctgattgtttatgtttttcctaattctgttgcatatt |
32225050 |
T |
|
| Q |
428 |
tattattcaattctgtttcctttctcgtattttcttctcttttggctacgtcaaattttgtgctctttcaacatgtgttaattaaatt |
515 |
Q |
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| T |
32225051 |
tattattcaattctgtttcctttctcttattttgttctcttttggctacttcaaattttgtgctttttctatatgtgttaattaaatt |
32225138 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 56; E-Value: 1e-22
Query Start/End: Original strand, 6 - 109
Target Start/End: Original strand, 32224618 - 32224721
Alignment:
| Q |
6 |
cacagaaaactgtaggaaatgctgctgctggtgctcagaaaactgtgggaaatgctgcagctggtgttcataagactgtaggagattatgctaccacggc |
105 |
Q |
| |
|
|||||| |||||| ||||||||||| ||||||| |||| |||||||||||||||||||||| |||||| ||||| |||||||| |||||||||| ||| |
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| T |
32224618 |
cacagacaactgtgggaaatgctgcagctggtgtccagacaactgtgggaaatgctgcagctaatgttcagaagaccgtaggagaatatgctaccaaggc |
32224717 |
T |
|
| Q |
106 |
tgct |
109 |
Q |
| |
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|||| |
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| T |
32224718 |
tgct |
32224721 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 433 - 488
Target Start/End: Original strand, 32210810 - 32210865
Alignment:
| Q |
433 |
ttcaattctgtttcctttctcgtattttcttctcttttggctacgtcaaattttgt |
488 |
Q |
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|||||| ||||||||||||| ||||||| ||||||||||||| | | ||||||||| |
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| T |
32210810 |
ttcaatcctgtttcctttctagtattttgttctcttttggcttcatgaaattttgt |
32210865 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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