View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4974-Insertion-6 (Length: 739)
Name: NF4974-Insertion-6
Description: NF4974
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4974-Insertion-6 |
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| [»] chr8 (3 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 401; Significance: 0; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 401; E-Value: 0
Query Start/End: Original strand, 261 - 739
Target Start/End: Complemental strand, 38096967 - 38096497
Alignment:
| Q |
261 |
gaccagaccagaccagatcaccatcatttcctactctctttggatgatttcataagcggtatgcatttctctttcactnnnnnnnnttttgcctccctct |
360 |
Q |
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| T |
38096967 |
gaccagaccataccagatcaccatcatttcctactctctttggatgatttcataagcggtatgcatttctctttcactccccc---ttttgcctccctct |
38096871 |
T |
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| Q |
361 |
tttcctcttttgttccctttaacttcacctcatccatccctagcctgcttctcctgtaagaaaacaaaaggtaacaaattaaacaacaaataaaagaaat |
460 |
Q |
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| T |
38096870 |
tttcctcttttgtttcctttaacttcacctcatccatccctagcctgcttctcctgtaagaaaacaaaaggtaacat-ttaaacaacaaataaaagaaat |
38096772 |
T |
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| Q |
461 |
tctataagtaattaatgagaaacgtacctttcttcattataggaattagatttcttgagcacaggttcagcttgaaaagcaacccggtttgctttcatgg |
560 |
Q |
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|||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38096771 |
tctaaaagtaat----gagaaacgtacctttcttcattataggaattagatttcttgagcacaggttcagcttgaaaagcaacccggtttgctttcatgg |
38096676 |
T |
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| Q |
561 |
attccacaatactcccactaaagtattccttctcttcactctgcaaattccccatcaaccttggattctccgttacacatatatcttcatcaccagaata |
660 |
Q |
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| T |
38096675 |
attccacaatactcccactaaagtattccttctcttcactctgcaaattccccatcaaccttggattctccgttacacatatatcttcatcaccagaata |
38096576 |
T |
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| Q |
661 |
cactttctcttcatcaacactctcccttcttttgcttgtggtccccacattgctcagcctcccttcctgctgctttgct |
739 |
Q |
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| T |
38096575 |
cactttctcttcatcaacactctcccttctcttgcttgttgtccccacattgctcagcctcccttcctgctgctttgct |
38096497 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 101; E-Value: 1e-49
Query Start/End: Original strand, 113 - 240
Target Start/End: Complemental strand, 38097152 - 38097020
Alignment:
| Q |
113 |
aggcttgcattaaggtcacaaatgcactttactaaataagatga-----aatcgagatttgaagagaaattaatattacatgcatcaacctataattgct |
207 |
Q |
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| T |
38097152 |
aggcttgcattaaggtcagaaatgcactttactaaataagatgagatgaaatcgggatttgaaaagaaattaatattacatgcatcaacctataattgct |
38097053 |
T |
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| Q |
208 |
agtgtactcattacatattctacctagactaga |
240 |
Q |
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| T |
38097052 |
agtgtactcattacatattctacctagactaga |
38097020 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 8 - 66
Target Start/End: Complemental strand, 38097305 - 38097247
Alignment:
| Q |
8 |
aatacaacctctaagttgttgcaattagataaatgactctaagtagagtcatcaataat |
66 |
Q |
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| T |
38097305 |
aatacaacctctaagttgttgcaattagataaatgactctaagtagagtcatcaataat |
38097247 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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