View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4974-Insertion-7 (Length: 692)
Name: NF4974-Insertion-7
Description: NF4974
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4974-Insertion-7 |
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Alignment Details
Target: chr8 (Bit Score: 537; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 537; E-Value: 0
Query Start/End: Original strand, 73 - 634
Target Start/End: Complemental strand, 32943199 - 32942642
Alignment:
| Q |
73 |
ccagtggttgttctagtccatggttttgcctctgaaggaatagtaacatggcagtttcaagttggtgcattaacaaaaaagtacgctgtttatgttccag |
172 |
Q |
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| T |
32943199 |
ccagtggttgttctagtccatggttttgcctctgaaggaatagtaacatggcagtttcaagttggtgcattaacaaaaaagtacgctgtttatgttccag |
32943100 |
T |
|
| Q |
173 |
atcttctattcttcggaggttctaccacagacaaaacagaaagatcacctaggtttcaagcagagtgtttggccattgctttaaggaaacttggtgttga |
272 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32943099 |
atcttctattcttcggaggttctaccacagacaaaacagaaagatcacctaggtttcaagcagagtgtttggccattgctttaaggaaacttggtgttga |
32943000 |
T |
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| Q |
273 |
aaaatgtattgttgttggttttagctacggtggaatggtggcttttaaaatggctgagatgtatcctgatttggttcaagctttggttatatctggatcc |
372 |
Q |
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| T |
32942999 |
aaaatgtattgttgttggttttagctacggtggaatggtggcttttaaaatggctgagatgtatcctgatttggttcaagctttggttatatctggatcc |
32942900 |
T |
|
| Q |
373 |
attttggctatgactgattctatcagtgtgagttcattgcaagaacttggattttcttcttcttccgagcttttgttacctaattctgttaaaggactta |
472 |
Q |
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| T |
32942899 |
attttggctatgactgattctatcagtgttagttcattgcaagaacttggattttcttcttcttctgagcttttgttacctaattctgttaaaggactta |
32942800 |
T |
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| Q |
473 |
aagcacttttatctgttgctgcttataaaaaactttggttcccggatcgtttacacaaagactttcttgaggtatgtatgtaaccctagttttcttcagt |
572 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32942799 |
aagcacttttatctgttgctgcttataaaaaactttggttcccggatcgtttacacaaagactttcttgaggtatgtatgtaaccctagttttcttcagt |
32942700 |
T |
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| Q |
573 |
aaaatcttttgattaaacaaatgaaatttgagaaaatatagctagctgttgtattgtagtaa |
634 |
Q |
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| T |
32942699 |
aaaatcttttgattaaacaaatgaaatttgagaaaatat----agctgttgtattgtagtaa |
32942642 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 632 - 692
Target Start/End: Complemental strand, 32942550 - 32942494
Alignment:
| Q |
632 |
taaaatggtgttatgataaaagtatgtatagytggaaaacagcacacagtttttagactcc |
692 |
Q |
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| T |
32942550 |
taaaatggtgttatgataaaagtat----agttggaaaacagcacacagtttttagactcc |
32942494 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 46; Significance: 7e-17; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 226 - 383
Target Start/End: Original strand, 7768449 - 7768606
Alignment:
| Q |
226 |
tttcaagcagagtgtttggccattgctttaaggaaacttggtgttgaaaaatgtattgttgttggttttagctacggtggaatggtggcttttaaaatgg |
325 |
Q |
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|||||||||||||||||||| | | |||| ||||||||| || || |||||| || | ||||| ||||| || |||||||||||||| |||||||||| |
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| T |
7768449 |
tttcaagcagagtgtttggcaaaggggttaaagaaacttggggtggagaaatgtgttttagttggatttagttatggtggaatggtggcgtttaaaatgg |
7768548 |
T |
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| Q |
326 |
ctgagatgtatcctgatttggttcaagctttggttatatctggatccattttggctat |
383 |
Q |
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| T |
7768549 |
ctgagctttatagtgatctggttcaaggtgtggttgtaactggctctgttttggctat |
7768606 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 253 - 353
Target Start/End: Original strand, 7737624 - 7737724
Alignment:
| Q |
253 |
ttaaggaaacttggtgttgaaaaatgtattgttgttggttttagctacggtggaatggtggcttttaaaatggctgagatgtatcctgatttggttcaag |
352 |
Q |
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|||| |||||| || || || |||||| |||| ||||| || || || |||||||||||||| ||||||||||||||||||||| ||| |||||| ||| |
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| T |
7737624 |
ttaaagaaactcggggtggagaaatgtgttgtggttggattcagttatggtggaatggtggcgtttaaaatggctgagatgtatagtgagttggttgaag |
7737723 |
T |
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| Q |
353 |
c |
353 |
Q |
| |
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| |
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| T |
7737724 |
c |
7737724 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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