View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4974-Insertion-8 (Length: 547)
Name: NF4974-Insertion-8
Description: NF4974
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4974-Insertion-8 |
 | |
|
| [»] chr5 (2 HSPs) |
| |
|
Alignment Details
Target: chr5 (Bit Score: 284; Significance: 1e-159; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 284; E-Value: 1e-159
Query Start/End: Original strand, 143 - 547
Target Start/End: Original strand, 8444702 - 8445107
Alignment:
| Q |
143 |
aactaataagttgacgagtatcaaataaactactgaactaaatttatagtgttcaacaaaattaacatttaaaccaaaaagtataacattaccnnnnnnn |
242 |
Q |
| |
|
|||||||||||| ||| |||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8444702 |
aactaataagttaacgggtatcaaatatactagtgaactaaatttatagtgttcaacaaaattaacatttaaaccaaaaagtataacattaccaaaaaaa |
8444801 |
T |
|
| Q |
243 |
-gttatatttat---tttttccattaagataaaaaagggtaaagttgacataaaaatgataagctaccaaaatatgctgtaa-cttgtaaaacaaatgtt |
337 |
Q |
| |
|
||||||||| | ||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
8444802 |
agttatatttttatttttttccattaagataataa-gggtaaagttgacataaaaatgataagctaccaaaatatgctgtaaacttgtaaaacaaatgtt |
8444900 |
T |
|
| Q |
338 |
acaattctataagaaaaaattgttatgaaacatgtatatcatactcttcctctcnnnnnnntgtatatcttattactcttttatgagtttaaataaaagc |
437 |
Q |
| |
|
| ||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||| |||||||||||||||||||||||||||| |
|
|
| T |
8444901 |
ataattctataagaaaaaattgttatgaaacatgtttatcatactcttcctctcaaaaaaatgtatatc---ttactcttttatgagtttaaataaaagc |
8444997 |
T |
|
| Q |
438 |
tataaattatcctctataaaataaaaaattattcttgtgaataagacacttcaatagtcaatagataataagaaaattaattaaatcttgataaagttat |
537 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8444998 |
tataaattatcctctataaaataaaaaattattcttgtgaataagacacttcaatagtcaatagataataagaaaattaattaaatcttgataaagttat |
8445097 |
T |
|
| Q |
538 |
attgtctata |
547 |
Q |
| |
|
|||||||||| |
|
|
| T |
8445098 |
attgtctata |
8445107 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 131; E-Value: 1e-67
Query Start/End: Original strand, 8 - 154
Target Start/End: Original strand, 8444525 - 8444670
Alignment:
| Q |
8 |
gtgagagctcaaatgctactaaaagaaaccataactcacaaacatatccaggtgattcacgctttcctccttaccacaaccactcgaactcaaatagaat |
107 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8444525 |
gtgagagctcaa-tgctactaaaagaaaccataactcacaaacataaacaggtgattcacgctttcctccttaccacaaccactcgaactcaaatagaat |
8444623 |
T |
|
| Q |
108 |
gaaactttaagttgtgtgtggtaaagaacatatataactaataagtt |
154 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8444624 |
gaaactttaagttgtgtgtggtaaagaacatatataactaataagtt |
8444670 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University